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Volumn 25, Issue 1, 2014, Pages 43-49

Nuclear pore interactions with the genome

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOPORIN; CHROMATIN; TRANSACTIVATOR PROTEIN;

EID: 84893035763     PISSN: 0959437X     EISSN: 18790380     Source Type: Journal    
DOI: 10.1016/j.gde.2013.11.018     Document Type: Review
Times cited : (46)

References (67)
  • 1
    • 36849074774 scopus 로고    scopus 로고
    • Dynamics and interplay of nuclear architecture, genome organization, and gene expression
    • Schneider R., Grosschedl R. Dynamics and interplay of nuclear architecture, genome organization, and gene expression. Genes Develop 2007, 21:3027-3043.
    • (2007) Genes Develop , vol.21 , pp. 3027-3043
    • Schneider, R.1    Grosschedl, R.2
  • 2
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the sequence: cellular organization of genome function
    • Misteli T. Beyond the sequence: cellular organization of genome function. Cell 2007, 128:787-800.
    • (2007) Cell , vol.128 , pp. 787-800
    • Misteli, T.1
  • 4
    • 34250777112 scopus 로고    scopus 로고
    • The nuclear envelope and transcriptional control
    • Akhtar A., Gasser S.M. The nuclear envelope and transcriptional control. Nat Rev Genet 2007, 8:507-517.
    • (2007) Nat Rev Genet , vol.8 , pp. 507-517
    • Akhtar, A.1    Gasser, S.M.2
  • 8
    • 7944236264 scopus 로고    scopus 로고
    • Mapping the dynamic organization of the nuclear pore complex inside single living cells
    • Rabut G., Doye V., Ellenberg J. Mapping the dynamic organization of the nuclear pore complex inside single living cells. Nat Cell Biol 2004, 6:1114-1121.
    • (2004) Nat Cell Biol , vol.6 , pp. 1114-1121
    • Rabut, G.1    Doye, V.2    Ellenberg, J.3
  • 9
    • 1642423486 scopus 로고    scopus 로고
    • Distinct functional domains within nucleoporins Nup153 and Nup98 mediate transcription-dependent mobility
    • Griffis E.R., Craige B., Dimaano C., Ullman K.S., Powers M.A. Distinct functional domains within nucleoporins Nup153 and Nup98 mediate transcription-dependent mobility. Mol Biol Cell 2004, 15:1991-2002.
    • (2004) Mol Biol Cell , vol.15 , pp. 1991-2002
    • Griffis, E.R.1    Craige, B.2    Dimaano, C.3    Ullman, K.S.4    Powers, M.A.5
  • 11
    • 0037604556 scopus 로고    scopus 로고
    • Peering through the pore: nuclear pore complex structure, assembly, and function
    • Suntharalingam M., Wente S.R. Peering through the pore: nuclear pore complex structure, assembly, and function. Develop Cell 2003, 4:775-789.
    • (2003) Develop Cell , vol.4 , pp. 775-789
    • Suntharalingam, M.1    Wente, S.R.2
  • 13
    • 77954043950 scopus 로고    scopus 로고
    • Nuclear transport and the mitotic apparatus: an evolving relationship
    • Wozniak R., Burke B., Doye V. Nuclear transport and the mitotic apparatus: an evolving relationship. Cell Mol Life Sci 2010, 67:2215-2230.
    • (2010) Cell Mol Life Sci , vol.67 , pp. 2215-2230
    • Wozniak, R.1    Burke, B.2    Doye, V.3
  • 14
    • 14044266853 scopus 로고    scopus 로고
    • Gene recruitment of the activated INO1 locus to the nuclear membrane
    • Brickner J.H., Walter P. Gene recruitment of the activated INO1 locus to the nuclear membrane. PLoS Biol 2004, 2:e342.
    • (2004) PLoS Biol , vol.2
    • Brickner, J.H.1    Walter, P.2
  • 16
    • 34247341747 scopus 로고    scopus 로고
    • H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state
    • Brickner D.G., Cajigas I., Fondufe-Mittendorf Y., Ahmed S., Lee P.C., Widom J., Brickner J.H. H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state. PLoS Biol 2007, 5:e81.
    • (2007) PLoS Biol , vol.5
    • Brickner, D.G.1    Cajigas, I.2    Fondufe-Mittendorf, Y.3    Ahmed, S.4    Lee, P.C.5    Widom, J.6    Brickner, J.H.7
  • 17
    • 77649210955 scopus 로고    scopus 로고
    • Nuclear pore proteins Nup153 and megator define transcriptionally active regions in the drosophila genome
    • Vaquerizas J.M., Suyama R., Kind J., Miura K., Luscombe N.M., Akhtar A. Nuclear pore proteins Nup153 and megator define transcriptionally active regions in the drosophila genome. PLoS Genet 2010, 6:e1000846.
    • (2010) PLoS Genet , vol.6
    • Vaquerizas, J.M.1    Suyama, R.2    Kind, J.3    Miura, K.4    Luscombe, N.M.5    Akhtar, A.6
  • 20
    • 77957377062 scopus 로고    scopus 로고
    • Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z. incorporation and INO1 transcriptional memory
    • Light W.H., Brickner D.G., Brand V.R., Brickner J.H. Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z. incorporation and INO1 transcriptional memory. Mol Cell 2010, 40:112-125.
    • (2010) Mol Cell , vol.40 , pp. 112-125
    • Light, W.H.1    Brickner, D.G.2    Brand, V.R.3    Brickner, J.H.4
  • 21
    • 84867226679 scopus 로고    scopus 로고
    • Cellular memory of acquired stress resistance in saccharomyces cerevisiae
    • Guan Q., Haroon S., Bravo D.G., Will J.L., Gasch A.P. Cellular memory of acquired stress resistance in saccharomyces cerevisiae. Genetics 2012, 192:495-505.
    • (2012) Genetics , vol.192 , pp. 495-505
    • Guan, Q.1    Haroon, S.2    Bravo, D.G.3    Will, J.L.4    Gasch, A.P.5
  • 22
    • 72749098124 scopus 로고    scopus 로고
    • Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex
    • Tan-Wong S.M., Wijayatilake H.D., Proudfoot N.J. Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex. Genes Develop 2009, 23:2610-2624.
    • (2009) Genes Develop , vol.23 , pp. 2610-2624
    • Tan-Wong, S.M.1    Wijayatilake, H.D.2    Proudfoot, N.J.3
  • 23
    • 18844412748 scopus 로고    scopus 로고
    • Developmentally induced changes in transcriptional program alter spatial organization across chromosomes
    • Casolari J.M., Brown C.R., Drubin D.A., Rando O.J., Silver P.A. Developmentally induced changes in transcriptional program alter spatial organization across chromosomes. Genes Develop 2005, 19:1188-1198.
    • (2005) Genes Develop , vol.19 , pp. 1188-1198
    • Casolari, J.M.1    Brown, C.R.2    Drubin, D.A.3    Rando, O.J.4    Silver, P.A.5
  • 24
    • 2342501365 scopus 로고    scopus 로고
    • Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization
    • Casolari J.M., Brown C.R., Komili S., West J., Hieronymus H., Silver P.A. Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization. Cell 2004, 117:427-439.
    • (2004) Cell , vol.117 , pp. 427-439
    • Casolari, J.M.1    Brown, C.R.2    Komili, S.3    West, J.4    Hieronymus, H.5    Silver, P.A.6
  • 25
    • 75749117571 scopus 로고    scopus 로고
    • Nucleoporins directly stimulate expression of developmental and cell-cycle genes inside the nucleoplasm
    • Kalverda B., Pickersgill H., Shloma V.V., Fornerod M. Nucleoporins directly stimulate expression of developmental and cell-cycle genes inside the nucleoplasm. Cell 2010, 140:360-371.
    • (2010) Cell , vol.140 , pp. 360-371
    • Kalverda, B.1    Pickersgill, H.2    Shloma, V.V.3    Fornerod, M.4
  • 26
    • 75749103380 scopus 로고    scopus 로고
    • Chromatin-bound nuclear pore components regulate gene expression in higher eukaryotes
    • Capelson M., Liang Y., Schulte R., Mair W., Wagner U., Hetzer M.W. Chromatin-bound nuclear pore components regulate gene expression in higher eukaryotes. Cell 2010, 140:372-383.
    • (2010) Cell , vol.140 , pp. 372-383
    • Capelson, M.1    Liang, Y.2    Schulte, R.3    Mair, W.4    Wagner, U.5    Hetzer, M.W.6
  • 28
    • 0027752440 scopus 로고
    • Lamin b distribution and association with peripheral chromatin revealed by optical sectioning and electron microscopy tomography
    • Belmont A.S., Zhai Y., Thilenius A. Lamin b distribution and association with peripheral chromatin revealed by optical sectioning and electron microscopy tomography. J Cell Biol 1993, 123(6 Pt 2):1671-1685.
    • (1993) J Cell Biol , vol.123 , Issue.6 PART 2 , pp. 1671-1685
    • Belmont, A.S.1    Zhai, Y.2    Thilenius, A.3
  • 30
    • 77952582231 scopus 로고    scopus 로고
    • Protein Tpr is required for establishing nuclear pore-associated zones of heterochromatin exclusion
    • Krull S., Dorries J., Boysen B., Reidenbach S., Magnius L., Norder H., Thyberg J., Cordes V.C. Protein Tpr is required for establishing nuclear pore-associated zones of heterochromatin exclusion. EMBO J 2010, 29:1659-1673.
    • (2010) EMBO J , vol.29 , pp. 1659-1673
    • Krull, S.1    Dorries, J.2    Boysen, B.3    Reidenbach, S.4    Magnius, L.5    Norder, H.6    Thyberg, J.7    Cordes, V.C.8
  • 31
    • 33750320374 scopus 로고    scopus 로고
    • Cotranscriptional recruitment to the mrna export receptor Mex67p contributes to nuclear pore anchoring of activated genes
    • Dieppois G., Iglesias N., Stutz F. Cotranscriptional recruitment to the mrna export receptor Mex67p contributes to nuclear pore anchoring of activated genes. Mol Cell Biol 2006, 26:7858-7870.
    • (2006) Mol Cell Biol , vol.26 , pp. 7858-7870
    • Dieppois, G.1    Iglesias, N.2    Stutz, F.3
  • 33
    • 34249003318 scopus 로고    scopus 로고
    • Glucose-responsive regulators of gene expression in Saccharomyces cerevisiae function at the nuclear periphery via a reverse recruitment mechanism
    • Sarma N.J., Haley T.M., Barbara K.E., Buford T.D., Willis K.A., Santangelo G.M. Glucose-responsive regulators of gene expression in Saccharomyces cerevisiae function at the nuclear periphery via a reverse recruitment mechanism. Genetics 2007, 175:1127-1135.
    • (2007) Genetics , vol.175 , pp. 1127-1135
    • Sarma, N.J.1    Haley, T.M.2    Barbara, K.E.3    Buford, T.D.4    Willis, K.A.5    Santangelo, G.M.6
  • 34
    • 84859386760 scopus 로고    scopus 로고
    • A negative feedback loop at the nuclear periphery regulates gal gene expression
    • Green E.M., Jiang Y., Joyner R., Weis K. A negative feedback loop at the nuclear periphery regulates gal gene expression. Mol Biol Cell 2012, 23:1367-1375.
    • (2012) Mol Biol Cell , vol.23 , pp. 1367-1375
    • Green, E.M.1    Jiang, Y.2    Joyner, R.3    Weis, K.4
  • 36
    • 84875478639 scopus 로고    scopus 로고
    • A conserved role for human Nup98 in altering chromatin structure and promoting epigenetic transcriptional memory
    • Light W.H., Freaney J., Sood V., Thompson A., D'Urso A., Horvath C.M., Brickner J.H. A conserved role for human Nup98 in altering chromatin structure and promoting epigenetic transcriptional memory. PLoS Biol 2013, 11:e1001524.
    • (2013) PLoS Biol , vol.11
    • Light, W.H.1    Freaney, J.2    Sood, V.3    Thompson, A.4    D'Urso, A.5    Horvath, C.M.6    Brickner, J.H.7
  • 37
    • 40349113413 scopus 로고    scopus 로고
    • Global histone acetylation induces functional genomic reorganization at mammalian nuclear pore complexes
    • Brown C.R., Kennedy C.J., Delmar V.A., Forbes D.J., Silver P.A. Global histone acetylation induces functional genomic reorganization at mammalian nuclear pore complexes. Genes Develop 2008, 22:627-639.
    • (2008) Genes Develop , vol.22 , pp. 627-639
    • Brown, C.R.1    Kennedy, C.J.2    Delmar, V.A.3    Forbes, D.J.4    Silver, P.A.5
  • 39
    • 33745699154 scopus 로고    scopus 로고
    • Motion as a phenotype: the use of live-cell imaging and machine visual screening to characterize transcription-dependent chromosome dynamics
    • Drubin D.A., Garakani A.M., Silver P.A. Motion as a phenotype: the use of live-cell imaging and machine visual screening to characterize transcription-dependent chromosome dynamics. BMC Cell Biol 2006, 7:19.
    • (2006) BMC Cell Biol , vol.7 , pp. 19
    • Drubin, D.A.1    Garakani, A.M.2    Silver, P.A.3
  • 42
    • 84866109279 scopus 로고    scopus 로고
    • Structure and function in the budding yeast nucleus
    • Taddei A., Gasser S.M. Structure and function in the budding yeast nucleus. Genetics 2012, 192:107-129.
    • (2012) Genetics , vol.192 , pp. 107-129
    • Taddei, A.1    Gasser, S.M.2
  • 43
    • 33748933029 scopus 로고    scopus 로고
    • 3'-end formation signals modulate the association of genes with the nuclear periphery as well as mrnp dot formation
    • Abruzzi K.C., Belostotsky D.A., Chekanova J.A., Dower K., Rosbash M. 3'-end formation signals modulate the association of genes with the nuclear periphery as well as mrnp dot formation. EMBO J 2006, 25:4253-4262.
    • (2006) EMBO J , vol.25 , pp. 4253-4262
    • Abruzzi, K.C.1    Belostotsky, D.A.2    Chekanova, J.A.3    Dower, K.4    Rosbash, M.5
  • 44
    • 46149085381 scopus 로고    scopus 로고
    • The nuclear exosome and adenylation regulate posttranscriptional tethering of yeast gal genes to the nuclear periphery
    • Vodala S., Abruzzi K.C., Rosbash M. The nuclear exosome and adenylation regulate posttranscriptional tethering of yeast gal genes to the nuclear periphery. Mol Cell 2008, 31:104-113.
    • (2008) Mol Cell , vol.31 , pp. 104-113
    • Vodala, S.1    Abruzzi, K.C.2    Rosbash, M.3
  • 45
    • 38049013812 scopus 로고    scopus 로고
    • Sus1, Sac3, and Thp1 mediate post-transcriptional tethering of active genes to the nuclear rim as well as to non-nascent mrnp
    • Chekanova J.A., Abruzzi K.C., Rosbash M., Belostotsky D.A. Sus1, Sac3, and Thp1 mediate post-transcriptional tethering of active genes to the nuclear rim as well as to non-nascent mrnp. Rna 2008, 14:66-77.
    • (2008) Rna , vol.14 , pp. 66-77
    • Chekanova, J.A.1    Abruzzi, K.C.2    Rosbash, M.3    Belostotsky, D.A.4
  • 48
    • 0032927877 scopus 로고    scopus 로고
    • Creb binding protein interacts with nucleoporin-specific fg repeats that activate transcription and mediate Nup98-Hoxa9 oncogenicity
    • Kasper L.H., Brindle P.K., Schnabel C.A., Pritchard C.E., Cleary M.L., van Deursen J.M. Creb binding protein interacts with nucleoporin-specific fg repeats that activate transcription and mediate Nup98-Hoxa9 oncogenicity. Mol Cell Biol 1999, 19:764-776.
    • (1999) Mol Cell Biol , vol.19 , pp. 764-776
    • Kasper, L.H.1    Brindle, P.K.2    Schnabel, C.A.3    Pritchard, C.E.4    Cleary, M.L.5    van Deursen, J.M.6
  • 49
    • 35548990188 scopus 로고    scopus 로고
    • We gather together: insulators and genome organization
    • Wallace J.A., Felsenfeld G. We gather together: insulators and genome organization. Curr Opin Genet Develop 2007, 17:400-407.
    • (2007) Curr Opin Genet Develop , vol.17 , pp. 400-407
    • Wallace, J.A.1    Felsenfeld, G.2
  • 50
    • 0037205232 scopus 로고    scopus 로고
    • Chromatin boundaries in budding yeast: the nuclear pore connection
    • Ishii K., Arib G., Lin C., Van Houwe G., Laemmli U.K. Chromatin boundaries in budding yeast: the nuclear pore connection. Cell 2002, 109:551-562.
    • (2002) Cell , vol.109 , pp. 551-562
    • Ishii, K.1    Arib, G.2    Lin, C.3    Van Houwe, G.4    Laemmli, U.K.5
  • 52
    • 0033981095 scopus 로고    scopus 로고
    • Rap, rap, open up! New wrinkles for Rap1 in yeast
    • Morse R.H. Rap, rap, open up! New wrinkles for Rap1 in yeast. Trends Genet 2000, 16:51-53.
    • (2000) Trends Genet , vol.16 , pp. 51-53
    • Morse, R.H.1
  • 53
    • 78650350837 scopus 로고    scopus 로고
    • Characterization of genome-nucleoporin interactions in Drosophila links chromatin insulators to the nuclear pore complex
    • Kalverda B., Fornerod M. Characterization of genome-nucleoporin interactions in Drosophila links chromatin insulators to the nuclear pore complex. Cell Cycle 2010, 9:4812-4817.
    • (2010) Cell Cycle , vol.9 , pp. 4812-4817
    • Kalverda, B.1    Fornerod, M.2
  • 54
    • 0032213217 scopus 로고    scopus 로고
    • Gaga mediates the enhancer blocking activity of the eve promoter in the drosophila embryo
    • Ohtsuki S., Levine M. Gaga mediates the enhancer blocking activity of the eve promoter in the drosophila embryo. Genes Develop 1998, 12:3325-3330.
    • (1998) Genes Develop , vol.12 , pp. 3325-3330
    • Ohtsuki, S.1    Levine, M.2
  • 55
    • 60749090162 scopus 로고    scopus 로고
    • Transcriptional memory at the nuclear periphery
    • Brickner J.H. Transcriptional memory at the nuclear periphery. Curr Opin Cell Biol 2009, 21:127-133.
    • (2009) Curr Opin Cell Biol , vol.21 , pp. 127-133
    • Brickner, J.H.1
  • 58
    • 77951996046 scopus 로고    scopus 로고
    • Dominant role for signal transduction in the transcriptional memory of yeast gal genes
    • Kundu S., Peterson C.L. Dominant role for signal transduction in the transcriptional memory of yeast gal genes. Mol Cell Biol 2010, 30:2330-2340.
    • (2010) Mol Cell Biol , vol.30 , pp. 2330-2340
    • Kundu, S.1    Peterson, C.L.2
  • 59
    • 17044399754 scopus 로고    scopus 로고
    • Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit
    • Radonjic M., Andrau J.C., Lijnzaad P., Kemmeren P., Kockelkorn T.T., van Leenen D., van Berkum N.L., Holstege F.C. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. Mol Cell 2005, 18:171-183.
    • (2005) Mol Cell , vol.18 , pp. 171-183
    • Radonjic, M.1    Andrau, J.C.2    Lijnzaad, P.3    Kemmeren, P.4    Kockelkorn, T.T.5    van Leenen, D.6    van Berkum, N.L.7    Holstege, F.C.8
  • 61
    • 20444382737 scopus 로고    scopus 로고
    • Regulation of transcription: From lambda to eukaryotes
    • Ptashne M. Regulation of transcription: From lambda to eukaryotes. Trends Biochem Sci 2005, 30:275-279.
    • (2005) Trends Biochem Sci , vol.30 , pp. 275-279
    • Ptashne, M.1
  • 62
    • 77950681154 scopus 로고    scopus 로고
    • Gamma interferon-dependent transcriptional memory via relocalization of a gene locus to PML nuclear bodies
    • Gialitakis M., Arampatzi P., Makatounakis T., Papamatheakis J. Gamma interferon-dependent transcriptional memory via relocalization of a gene locus to PML nuclear bodies. Mol Cell Biol 2010, 30:2046-2056.
    • (2010) Mol Cell Biol , vol.30 , pp. 2046-2056
    • Gialitakis, M.1    Arampatzi, P.2    Makatounakis, T.3    Papamatheakis, J.4
  • 64
    • 84866392310 scopus 로고    scopus 로고
    • Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics
    • Kim T., Xu Z., Clauder-Munster S., Steinmetz L.M., Buratowski S. Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics. Cell 2012, 150:1158-1169.
    • (2012) Cell , vol.150 , pp. 1158-1169
    • Kim, T.1    Xu, Z.2    Clauder-Munster, S.3    Steinmetz, L.M.4    Buratowski, S.5
  • 65
    • 36549089092 scopus 로고    scopus 로고
    • A yeast catabolic enzyme controls transcriptional memory
    • Zacharioudakis I., Gligoris T., Tzamarias D. A yeast catabolic enzyme controls transcriptional memory. Curr Biol 2007, 17:2041-2046.
    • (2007) Curr Biol , vol.17 , pp. 2041-2046
    • Zacharioudakis, I.1    Gligoris, T.2    Tzamarias, D.3
  • 66
    • 84874276157 scopus 로고    scopus 로고
    • The role of Nup98 in transcription regulation in healthy and diseased cells
    • Franks T.M., Hetzer M.W. The role of Nup98 in transcription regulation in healthy and diseased cells. Trends Cell Biol 2013, 23:112-117.
    • (2013) Trends Cell Biol , vol.23 , pp. 112-117
    • Franks, T.M.1    Hetzer, M.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.