-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Research, 25, 3389-3402.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
10444221886
-
Diversity creation methods: A survey and categorisation
-
Brown, G., Wyatt, J., Harris, R., & Yao, X. (2005). Diversity creation methods: A survey and categorisation. Journal of Information Fusion, 6, 5-20.
-
(2005)
Journal of Information Fusion
, vol.6
, pp. 5-20
-
-
Brown, G.1
Wyatt, J.2
Harris, R.3
Yao, X.4
-
3
-
-
27944488680
-
Accurate prediction of protein disordered regions by mining protein structure data
-
doi:10.1007/s10618-005-0001-y
-
Cheng, J., Sweredoski, M. J., & Baldi, P. (2005). Accurate prediction of protein disordered regions by mining protein structure data. Data Mining and Knowledge Discovery, 11, 213-222. doi:10.1007/s10618-005-0001-y
-
(2005)
Data Mining and Knowledge Discovery
, vol.11
, pp. 213-222
-
-
Cheng, J.1
Sweredoski, M.J.2
Baldi, P.3
-
4
-
-
75149164436
-
PreDisorder: Ab initio sequence-based prediction of protein disordered regions
-
doi:10.1186/1471-2105-10-436
-
Deng, X., Eickholt, J., & Cheng, J. (2009). PreDisorder: Ab initio sequence-based prediction of protein disordered regions. BMC Bioinformatics, 10, 436. doi:10.1186/1471-2105-10-436
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 436
-
-
Deng, X.1
Eickholt, J.2
Cheng, J.3
-
5
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
doi:10.1016/j.jmb.2005.01.071
-
Dosztanyi, Z., Csizmok, V., Tompa, P., & Simon, I. (2005). The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. Journal of Molecular Biology, 347, 827-839. doi:10.1016/j.jmb.2005.01.071
-
(2005)
Journal of Molecular Biology
, vol.347
, pp. 827-839
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
6
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
doi:10.1093/bioinformatics/bti541
-
Dosztányi, Z., Csizmok, V., Tompa, P., & Simon, I. (2005). IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics, 21, 3433-3434. doi:10.1093/bioinformatics/bti541
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
7
-
-
77950957385
-
Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins
-
doi:10.1093/bib/bbp061
-
Dosztányi, Z., Mészáros, B., & Simon, I. (2010). Bioinformatical approaches to characterize intrinsically disordered/ unstructured proteins. Briefings in Bioinformatics, 11, 225-243. doi:10.1093/bib/bbp061
-
(2010)
Briefings in Bioinformatics
, vol.11
, pp. 225-243
-
-
Dosztányi, Z.1
Mészáros, B.2
Simon, I.3
-
8
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker, A. K., Brown, C. J., Lawson, J. D., Iakoucheva, L. M., & Obradovic, Z. (2002). Intrinsic disorder and protein function. Biochemistry, 41, 6573-6582.
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradovic, Z.5
-
9
-
-
68749093787
-
Predicting intrinsic disorder in proteins: An overview
-
He, B., Wang, K., Liu, Y., Xue, B., Uversky, V. N., & Dunker, A. K. (2009). Predicting intrinsic disorder in proteins: An overview. Cell Research, 19, 929-949.
-
(2009)
Cell Research
, vol.19
, pp. 929-949
-
-
He, B.1
Wang, K.2
Liu, Y.3
Xue, B.4
Uversky, V.N.5
Dunker, A.K.6
-
10
-
-
34548567232
-
POODLE-L: A two-level SVM prediction system for reliably predicting long disordered regions
-
doi:10.1093/bioinformatics/btm302
-
Hirose, S., Shimizu, K., Kanai, S., Kuroda, Y., & Noguchi, T. (2007). POODLE-L: A two-level SVM prediction system for reliably predicting long disordered regions. Bioinformatics, 23, 2046-2053. doi:10.1093/bioinformatics/ btm302
-
(2007)
Bioinformatics
, vol.23
, pp. 2046-2053
-
-
Hirose, S.1
Shimizu, K.2
Kanai, S.3
Kuroda, Y.4
Noguchi, T.5
-
11
-
-
0025224223
-
Biophysical and molecular mechanisms of Shaker potassium channel inactivation
-
Hoshi, T., Zagotta, W. N., & Aldrich, R. W. (1990). Biophysical and molecular mechanisms of Shaker potassium channel inactivation. Science, 250, 533-538.
-
(1990)
Science
, vol.250
, pp. 533-538
-
-
Hoshi, T.1
Zagotta, W.N.2
Aldrich, R.W.3
-
12
-
-
0035107306
-
Identification of intrinsic order and disorder in the DNA repair protein XPA
-
doi:10.1110/ps.29401
-
Iakoucheva, L. M., Kimzey, A. L., Masselon, C. D., Bruce, J. E., Garner, E. C., Brown, C. J., Ackerman, E. J. (2001). Identification of intrinsic order and disorder in the DNA repair protein XPA. Protein Science, 10, 560-571. doi:10.1110/ps.29401
-
(2001)
Protein Science
, vol.10
, pp. 560-571
-
-
Iakoucheva, L.M.1
Kimzey, A.L.2
Masselon, C.D.3
Bruce, J.E.4
Garner, E.C.5
Brown, C.J.6
Ackerman, E.J.7
-
13
-
-
34547588389
-
PrDOS: Prediction of disordered protein regions from amino acid sequence
-
Web Server issue doi:10.1093/nar/gkm363
-
Ishida, T., & Kinoshita, K. (2007). PrDOS: Prediction of disordered protein regions from amino acid sequence. Nucleic Acids Research, 35(Web Server issue), W460-W464. doi:10.1093/nar/gkm363
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 460-464
-
-
Ishida, T.1
Kinoshita, K.2
-
14
-
-
44349192171
-
Prediction of disordered regions in proteins based on the meta approach
-
doi:10.1093/bioinformatics/btn195
-
Ishida, T., & Kinoshita, K. (2008). Prediction of disordered regions in proteins based on the meta approach. Bioinformatics, 24, 1344-1348. doi:10.1093/bioinformatics/btn195
-
(2008)
Bioinformatics
, vol.24
, pp. 1344-1348
-
-
Ishida, T.1
Kinoshita, K.2
-
15
-
-
0242362157
-
Prediction of disordered regions in proteins from position specific score matrices
-
doi:10.1002/prot.10528
-
Jones, D. T., & Ward, J. J. (2003). Prediction of disordered regions in proteins from position specific score matrices. Proteins, 53(Suppl 6), 573-578. doi:10.1002/prot.10528
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 573-578
-
-
Jones, D.T.1
Ward, J.J.2
-
16
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
doi:10.1002/bip. 360221211
-
Kabsch, W., & Sander, C. (1983). Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637. doi:10.1002/bip. 360221211
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
17
-
-
84861332327
-
MetaDisorder: A meta-server for the prediction of intrinsic disorder in proteins
-
doi:10.1186/1471-2105-13-111; 10.1186/1471-2105-13-111
-
Kozlowski, L. P., & Bujnicki, J. M. (2012). MetaDisorder: A meta-server for the prediction of intrinsic disorder in proteins. BMC Bioinformatics, 13, 111-2105-13-111. doi:10.1186/1471-2105-13-111; 10.1186/1471-2105-13-111
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 1112105-13111
-
-
Kozlowski, L.P.1
Bujnicki, J.M.2
-
18
-
-
0242458482
-
Protein disorder prediction: Implications for structural proteomics
-
Linding, R., Jensen, L. J., Diella, F., Bork, P., Gibson, T. J., & Russell, R. B. (2003). Protein disorder prediction: Implications for structural proteomics. Structure, 11, 1453-1459.
-
(2003)
Structure
, vol.11
, pp. 1453-1459
-
-
Linding, R.1
Jensen, L.J.2
Diella, F.3
Bork, P.4
Gibson, T.J.5
Russell, R.B.6
-
19
-
-
0042622240
-
GlobPlot: Exploring protein sequences for globularity and disorder
-
Linding, R., Russell, R. B., Neduva, V., & Gibson, T. J. (2003). GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Research, 31, 3701-3708.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3701-3708
-
-
Linding, R.1
Russell, R.B.2
Neduva, V.3
Gibson, T.J.4
-
20
-
-
45149135343
-
-
[Map]. Retrieved from doi:10.1186/1471-2164-9-s1-s9
-
MacCallum, B. (2004). Order/disorder prediction with self organizing maps. [Map]. Retrieved from http://www.webcitation. org/query.phpurl=http://www. forcasp.org/paper2127. html doi:10.1186/1471-2164-9-s1-s9
-
(2004)
Order/disorder Prediction with Self Organizing Maps
-
-
Maccallum, B.1
-
21
-
-
78149244240
-
MOBI: A web server to define and visualize structural mobility in NMR protein ensembles
-
doi:10.1093/bioinformatics/btq537
-
Martin, A. J., Walsh, I., & Tosatto, S. C. (2010). MOBI: A web server to define and visualize structural mobility in NMR protein ensembles. Bioinformatics, 26, 2916-2917. doi:10.1093/bioinformatics/btq537
-
(2010)
Bioinformatics
, vol.26
, pp. 2916-2917
-
-
Martin, A.J.1
Walsh, I.2
Tosatto, S.C.3
-
22
-
-
49549111841
-
Intrinsic disorder prediction from the analysis of multiple protein fold recognition models
-
doi:10.1093/bioinformatics/btn326
-
McGuffin, L. J. (2008). Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. Bioinformatics, 24, 1798-1804. doi:10.1093/bioinformatics/btn326
-
(2008)
Bioinformatics
, vol.24
, pp. 1798-1804
-
-
McGuffin, L.J.1
-
23
-
-
67650385638
-
Protein disorder in the human diseasome: Unfoldomics of human genetic diseases
-
doi:10.1186/1471-2164-10-S1-S12
-
Midic, U., Oldfield, C. J., Dunker, A. K., Obradovic, Z., & Uversky, V. N. (2009). Protein disorder in the human diseasome: Unfoldomics of human genetic diseases. BMC Genomics, 10(Suppl 1), S12. doi:10.1186/1471-2164-10-S1- S12
-
(2009)
BMC Genomics
, vol.10
, Issue.SUPPL. 1
, pp. 12
-
-
Midic, U.1
Oldfield, C.J.2
Dunker, A.K.3
Obradovic, Z.4
Uversky, V.N.5
-
24
-
-
77956502766
-
Improved sequencebased prediction of disordered regions with multilayer fusion of multiple information sources
-
doi:10.1093/bioinformatics/btq373
-
Mizianty, M. J., Stach, W., Chen, K., Kedarisetti, K. D., Disfani, F. M., & Kurgan, L. (2010). Improved sequencebased prediction of disordered regions with multilayer fusion of multiple information sources. Bioinformatics, 26, i489-i496. doi:10.1093/bioinformatics/btq373
-
(2010)
Bioinformatics
, vol.26
, pp. 1489-1496
-
-
Mizianty, M.J.1
Stach, W.2
Chen, K.3
Kedarisetti, K.D.4
Disfani, F.M.5
Kurgan, L.6
-
25
-
-
80855132586
-
Evaluation of disorder predictions in CASP9
-
doi:10.1002/prot.23161
-
Monastyrskyy, B., Fidelis, K., Moult, J., Tramontano, A., & Kryshtafovych, A. (2011). Evaluation of disorder predictions in CASP9. Proteins, 79, 107-118. doi:10.1002/prot.23161
-
(2011)
Proteins
, vol.79
, pp. 107-118
-
-
Monastyrskyy, B.1
Fidelis, K.2
Moult, J.3
Tramontano, A.4
Kryshtafovych, A.5
-
26
-
-
74249104442
-
Assessment of disorder predictions in CASP8
-
doi:10.1002/prot.22586
-
Noivirt-Brik, O., Prilusky, J., & Sussman, J. L. (2009). Assessment of disorder predictions in CASP8. Proteins, 77(Suppl 9), 210-216. doi:10.1002/prot.22586
-
(2009)
Proteins
, vol.77
, Issue.SUPPL. 9
, pp. 210-216
-
-
Noivirt-Brik, O.1
Prilusky, J.2
Sussman, J.L.3
-
27
-
-
0242267500
-
Predicting intrinsic disorder from amino acid sequence
-
doi:10.1002/prot.10532
-
Obradovic, Z., Peng, K., Vucetic, S., Radivojac, P., Brown, C. J., & Dunker, A. K. (2003). Predicting intrinsic disorder from amino acid sequence. Proteins, 53(Suppl 6), 566-572 doi:10.1002/prot.10532
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 566-572
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Brown, C.J.5
Dunker, A.K.6
-
28
-
-
30344485673
-
Exploiting heterogeneous sequence properties improves prediction of protein disorder
-
doi:10.1002/prot.20735
-
Obradovic, Z., Peng, K., Vucetic, S., Radivojac, P., & Dunker, A. K. (2005). Exploiting heterogeneous sequence properties improves prediction of protein disorder. Proteins, 61(Suppl 7), 176-182. doi:10.1002/prot.20735
-
(2005)
Proteins
, vol.61
, Issue.SUPPL. 7
, pp. 176-182
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Dunker, A.K.5
-
29
-
-
13644257647
-
Comparing and combining predictors of mostly disordered proteins
-
doi:10.1021/bi047993o
-
Oldfield, C. J., Cheng, Y., Cortese, M. S., Brown, C. J., Uversky, V. N., & Dunker, A. K. (2005). Comparing and combining predictors of mostly disordered proteins. Biochemistry, 44, 1989-2000. doi:10.1021/bi047993o
-
(2005)
Biochemistry
, vol.44
, pp. 1989-2000
-
-
Oldfield, C.J.1
Cheng, Y.2
Cortese, M.S.3
Brown, C.J.4
Uversky, V.N.5
Dunker, A.K.6
-
30
-
-
84857129811
-
Comprehensive comparative assessment of in-silico predictors of disordered regions
-
Peng, Z. L., & Kurgan, L. (2012a). Comprehensive comparative assessment of in-silico predictors of disordered regions. Current Protein and Peptide Science, 13, 6-18.
-
(2012)
Current Protein and Peptide Science
, vol.13
, pp. 6-18
-
-
Peng, Z.L.1
Kurgan, L.2
-
31
-
-
84865991020
-
On the complementarity of the consensus-based disorder prediction
-
Peng, Z. L. & Kurgan, L. (2012b). On the complementarity of the consensus-based disorder prediction. Pacific Symposium on Biocomputing, 17, 176-187.
-
(2012)
Pacific Symposium on Biocomputing
, vol.17
, pp. 176-187
-
-
Peng, Z.L.1
Kurgan, L.2
-
32
-
-
33745289067
-
Length-dependent prediction of protein intrinsic disorder
-
doi:10.1186/1471-2105-7-208
-
Peng, K., Radivojac, P., Vucetic, S., Dunker, A. K., & Obradovic, Z. (2006). Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics, 7, 208. doi:10.1186/1471-2105-7-208
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 208
-
-
Peng, K.1
Radivojac, P.2
Vucetic, S.3
Dunker, A.K.4
Obradovic, Z.5
-
33
-
-
14544299774
-
Optimizing long intrinsic disorder predictors with protein evolutionary information
-
Peng, K., Vucetic, S., Radivojac, P., Brown, C. J., Dunker, A. K., & Obradovic, Z. (2005). Optimizing long intrinsic disorder predictors with protein evolutionary information. Journal of Bioinformatics and Computational Biology, 3, 35-60.
-
(2005)
Journal of Bioinformatics and Computational Biology
, vol.3
, pp. 35-60
-
-
Peng, K.1
Vucetic, S.2
Radivojac, P.3
Brown, C.J.4
Dunker, A.K.5
Obradovic, Z.6
-
34
-
-
24044515001
-
FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded
-
doi:10.1093/bioinformatics/bti537
-
Prilusky, J., Felder, C. E., Zeev-Ben-Mordehai, T., Rydberg, E. H., Man, O., Beckmann, J. S., & Sussman, J. L. (2005). FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics, 21, 3435-3438. doi:10.1093/bioinformatics/bti537
-
(2005)
Bioinformatics
, vol.21
, pp. 3435-3438
-
-
Prilusky, J.1
Felder, C.E.2
Zeev-Ben-Mordehai, T.3
Rydberg, E.H.4
Man, O.5
Beckmann, J.S.6
Sussman, J.L.7
-
35
-
-
65949097958
-
The role of intrinsically unstructured proteins in neurodegenerative diseases
-
Raychaudhuri, S., Dey, S., Bhattacharyya, N. P., & Mukhopadhyay, D. (2009). The role of intrinsically unstructured proteins in neurodegenerative diseases. PLoS ONE, 4, e5566.
-
(2009)
PLoS ONE
, vol.4
-
-
Raychaudhuri, S.1
Dey, S.2
Bhattacharyya, N.P.3
Mukhopadhyay, D.4
-
36
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero, P., Obradovic, Z., Li, X., Garner, E. C., Brown, C. J., & Dunker, A. K. (2001). Sequence complexity of disordered protein. Proteins, 42, 38-48.
-
(2001)
Proteins
, vol.42
, pp. 38-48
-
-
Romero, P.1
Obradovic, Z.2
Li, X.3
Garner, E.C.4
Brown, C.J.5
Dunker, A.K.6
-
37
-
-
34547599318
-
Natively unstructured loops differ from other loops
-
Schlessinger, A., Liu, J., & Rost, B. (2007). Natively unstructured loops differ from other loops. PLoS Comput Biology, 3, e140.
-
(2007)
PLoS Comput Biology
, vol.3
-
-
Schlessinger, A.1
Liu, J.2
Rost, B.3
-
38
-
-
34548750953
-
Natively unstructured regions in proteins identified from contact predictions
-
doi:10.1093/bioinformatics/btm349
-
Schlessinger, A., Punta, M., & Rost, B. (2007). Natively unstructured regions in proteins identified from contact predictions. Bioinformatics, 23, 2376-2384. doi:10.1093/bioinformatics/btm349
-
(2007)
Bioinformatics
, vol.23
, pp. 2376-2384
-
-
Schlessinger, A.1
Punta, M.2
Rost, B.3
-
39
-
-
84885949386
-
Improved disorder prediction by combination of orthogonal approaches
-
Schlessinger, A., Punta, M., Yachdav, G., Kajan, L., & Rost, B. (2009). Improved disorder prediction by combination of orthogonal approaches. PLoS ONE, 4, e4433.
-
(2009)
PLoS ONE
, vol.4
-
-
Schlessinger, A.1
Punta, M.2
Yachdav, G.3
Kajan, L.4
Rost, B.5
-
40
-
-
33645288849
-
PROFbval: Predict flexible and rigid residues in proteins
-
doi:10.1093/bioinformatics/btl032
-
Schlessinger, A., Yachdav, G., & Rost, B. (2006). PROFbval: Predict flexible and rigid residues in proteins. Bioinformatics, 22, 891-893. doi:10.1093/bioinformatics/btl032
-
(2006)
Bioinformatics
, vol.22
, pp. 891-893
-
-
Schlessinger, A.1
Yachdav, G.2
Rost, B.3
-
41
-
-
34748854289
-
Predicting mostly disordered proteins by using structure-unknown protein data
-
doi:10.1186/1471-2105-8-78
-
Shimizu, K., Muraoka, Y., Hirose, S., Tomii, K., & Noguchi, T. (2007). Predicting mostly disordered proteins by using structure-unknown protein data. BMC Bioinformatics, 8, 78. doi:10.1186/1471-2105-8-78
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 78
-
-
Shimizu, K.1
Muraoka, Y.2
Hirose, S.3
Tomii, K.4
Noguchi, T.5
-
42
-
-
33846099868
-
DisProt: The database of disordered proteins
-
Database issue doi:10.1093/nar/gkl893
-
Sickmeier, M., Hamilton, J. A., LeGall, T., Vacic, V., Cortese, M. S., Tantos, A., Dunker, A. K. (2007). DisProt: The database of disordered proteins. Nucleic Acids Research, 35(Database issue), D786-D793. doi:10.1093/nar/gkl893
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 786-793
-
-
Sickmeier, M.1
Hamilton, J.A.2
Legall, T.3
Vacic, V.4
Cortese, M.S.5
Tantos, A.6
Dunker, A.K.7
-
43
-
-
76749161891
-
Parameterization of disorder predictors for large-scale applications requiring high specificity by using an extended benchmark dataset
-
doi:10.1186/1471-2164-11-S1-S15
-
Sirota, F., Ooi, H., Gattermayer, T., Schneider, G., Eisenhaber, F., & Maurer-Stroh, S. (2010). Parameterization of disorder predictors for large-scale applications requiring high specificity by using an extended benchmark dataset. BMC Genomics, 11, 1-17. doi:10.1186/1471-2164-11-S1-S15
-
(2010)
BMC Genomics
, vol.11
, pp. 1-17
-
-
Sirota, F.1
Ooi, H.2
Gattermayer, T.3
Schneider, G.4
Eisenhaber, F.5
Maurer-Stroh, S.6
-
44
-
-
34547574473
-
PDA: Integrated protein disorder analyzer
-
Web Server issue doi:10.1093/nar/gkm353
-
Su, C. T., Chen, C. Y., & Hsu, C. M. (2007). iPDA: Integrated protein disorder analyzer. Nucleic Acids Research, 35 (Web Server issue), W465-W472. doi:10.1093/nar/gkm353
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 465-472
-
-
Su, C.T.1
Chen, C.Y.2
Hsu, C.M.3
-
45
-
-
33746952996
-
Protein disorder prediction by condensed PSSM considering propensity for order or disorder
-
doi:10.1186/1471-2105-7-319
-
Su, C. T., Chen, C. Y., & Ou, Y. Y. (2006). Protein disorder prediction by condensed PSSM considering propensity for order or disorder. BMC Bioinformatics, 7, 319. doi:10.1186/1471-2105-7-319
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 319
-
-
Su, C.T.1
Chen, C.Y.2
Ou, Y.Y.3
-
46
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa, P. (2002). Intrinsically unstructured proteins. Trends in Biochemical Sciences, 27, 527-533.
-
(2002)
Trends in Biochemical Sciences
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
47
-
-
0034669882
-
Why are natively unfolded proteins unstructured under physiologic conditions
-
Uversky, V. N., Gillespie, J. R., & Fink, A. L. (2000). Why are "natively unfolded" proteins unstructured under physiologic conditions Proteins, 41, 415-427.
-
(2000)
Proteins
, vol.41
, pp. 415-427
-
-
Uversky, V.N.1
Gillespie, J.R.2
Fink, A.L.3
-
48
-
-
48249097986
-
Intrinsically disordered proteins in human diseases: Introducing the D2 concept
-
doi:10.1146/annurev.biophys.37.032807.125924
-
Uversky, V. N., Oldfield, C. J., & Dunker, A. K. (2008). Intrinsically disordered proteins in human diseases: Introducing the D2 concept. Annual Review of Biophysics, 37, 215-246. doi:10.1146/annurev.biophys.37. 032807.125924
-
(2008)
Annual Review of Biophysics
, vol.37
, pp. 215-246
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
49
-
-
0041418213
-
Flavors of protein disorder
-
doi:10.1002/prot.10437
-
Vucetic, S., Brown, C. J., Dunker, A. K., & Obradovic, Z. (2003). Flavors of protein disorder. Proteins, 52, 573-584. doi:10.1002/prot.10437
-
(2003)
Proteins
, vol.52
, pp. 573-584
-
-
Vucetic, S.1
Brown, C.J.2
Dunker, A.K.3
Obradovic, Z.4
-
50
-
-
33747868721
-
Spritz: A server for the prediction of intrinsically disordered regions in protein sequences using kernel machines
-
34 Web Server issue doi:10.1093/nar/gkl166
-
Vullo, A., Bortolami, O., Pollastri, G., & Tosatto, S. C. (2006). Spritz: A server for the prediction of intrinsically disordered regions in protein sequences using kernel machines. Nucleic Acids Research, 34 (Web Server issue), W164-W168. doi:10.1093/nar/gkl166
-
(2006)
Nucleic Acids Research
, pp. 164-168
-
-
Vullo, A.1
Bortolami, O.2
Pollastri, G.3
Tosatto, S.C.4
-
51
-
-
84857170967
-
ESpritz: Accurate and fast prediction of protein disorder
-
doi:10.1093/bioinformatics/btr682
-
Walsh, I., Martin, A. J., Di Domenico, T., & Tosatto, S. C. (2012). ESpritz: Accurate and fast prediction of protein disorder. Bioinformatics, 28, 503-509. doi:10.1093/bioinformatics/btr682
-
(2012)
Bioinformatics
, vol.28
, pp. 503-509
-
-
Walsh, I.1
Martin, A.J.2
Di Domenico, T.3
Tosatto, S.C.4
-
52
-
-
79959956361
-
CSpritz: Accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs
-
(Web Server issue doi:10.1093/nar/gkr411
-
Walsh, I., Martin, A. J., Di Domenico, T., Vullo, A., Pollastri, G., & Tosatto, S. C. (2011). CSpritz: Accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs. Nucleic Acids Research, 39 (Web Server issue), W190-W196. doi:10.1093/nar/gkr411
-
(2011)
Nucleic Acids Research
, vol.39
, pp. 190-196
-
-
Walsh, I.1
Martin, A.J.2
Di Domenico, T.3
Vullo, A.4
Pollastri, G.5
Tosatto, S.C.6
-
53
-
-
44349150513
-
OnD-CRF: Predicting order and disorder in proteins using [corrected] conditional random fields
-
doi:10.1093/bioinformatics/btn132
-
Wang, L., & Sauer, U. H. (2008). OnD-CRF: Predicting order and disorder in proteins using [corrected] conditional random fields. Bioinformatics, 24, 1401-1402. doi:10.1093/bioinformatics/btn132
-
(2008)
Bioinformatics
, vol.24
, pp. 1401-1402
-
-
Wang, L.1
Sauer, U.H.2
-
54
-
-
3242891318
-
The disopred server for the prediction of protein disorder
-
doi:10.1093/bioinformatics/bth195
-
Ward, J. J., McGuffin, L. J., Bryson, K., Buxton, B. F., & Jones, D. T. (2004). The DISOPRED server for the prediction of protein disorder. Bioinformatics, 20, 2138-2139. doi:10.1093/bioinformatics/bth195
-
(2004)
Bioinformatics
, vol.20
, pp. 2138-2139
-
-
Ward, J.J.1
McGuffin, L.J.2
Bryson, K.3
Buxton, B.F.4
Jones, D.T.5
-
55
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
doi:10.1016/j. jmb.2004 02002
-
Ward, J. J., Sodhi, J. S., McGuffin, L. J., Buxton, B. F., & Jones, D. T. (2004). Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. Journal of Molecular Biology, 337, 635-645. doi:10.1016/j. jmb.2004.02.002
-
(2004)
Journal of Molecular Biology
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
Sodhi, J.S.2
McGuffin, L.J.3
Buxton, B.F.4
Jones, D.T.5
-
56
-
-
76849087968
-
PONDR-FIT: A meta-predictor of intrinsically disordered amino acids
-
doi:10.1016/j.bbapap.2010.01.011
-
Xue, B., Dunbrack, R. L., Williams, R. W., Dunker, A. K., & Uversky, V. N. (2010). PONDR-FIT: A meta-predictor of intrinsically disordered amino acids. Biochimica Et Biophysica Acta (BBA)-Proteins & Proteomics, 1804, 996-1010. doi:10.1016/j.bbapap.2010.01.011
-
(2010)
Biochimica et Biophysica Acta (BBA)-Proteins & Proteomics
, vol.1804
, pp. 996-1010
-
-
Xue, B.1
Dunbrack, R.L.2
Williams, R.W.3
Dunker, A.K.4
Uversky, V.N.5
-
57
-
-
84859701551
-
Orderly order in protein intrinsic disorder distribution: Disorder in 3500 proteomes from viruses and the three domains of life
-
doi:10.1080/07391102.2012.675145;10(1080/07391102) 2012 675145
-
Xue, B., Dunker, A. K., & Uversky, V. N. (2012). Orderly order in protein intrinsic disorder distribution: Disorder in 3500 proteomes from viruses and the three domains of life. Journal of Biomolecular Structure and Dynamics, 30, 137-149. doi:10.1080/07391102.2012.675145;10(1080/07391102), 2012, 675145
-
(2012)
Journal of Biomolecular Structure and Dynamics
, vol.30
, pp. 137-149
-
-
Xue, B.1
Dunker, A.K.2
Uversky, V.N.3
-
58
-
-
20744437001
-
RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
-
doi:10.1093/bioinformatics/bti534
-
Yang, Z. R., Thomson, R., McNeil, P., & Esnouf, R. M. (2005). RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. Bioinformatics, 21, 3369-3376. doi:10.1093/bioinformatics/bti534
-
(2005)
Bioinformatics
, vol.21
, pp. 3369-3376
-
-
Yang, Z.R.1
Thomson, R.2
McNeil, P.3
Esnouf, R.M.4
-
59
-
-
34547458990
-
IUP: Intrinsically unstructured protein predictor-a software tool for analyzing polypeptide sequences. Sixth
-
Yang, M. Q., & Yang, J. Y. (2006). IUP: Intrinsically unstructured protein predictor-a software tool for analyzing polypeptide sequences. Sixth IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006, 3-11.
-
(2006)
IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006
, pp. 3-11
-
-
Yang, M.Q.1
Yang, J.Y.2
-
60
-
-
84855184716
-
SPINE-D: Accurate prediction of short and long disordered regions by a single neural-network based method
-
Zhang, T., Faraggi, E., Xue, B., Dunker, A. K., Uversky, V. N., & Zhou, Y. (2012). SPINE-D: Accurate prediction of short and long disordered regions by a single neural-network based method. Journal of Biomolecular Structure and Dynamics, 29, 799-813.
-
(2012)
Journal of Biomolecular Structure and Dynamics
, vol.29
, pp. 799-813
-
-
Zhang, T.1
Faraggi, E.2
Xue, B.3
Dunker, A.K.4
Uversky, V.N.5
Zhou, Y.6
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