-
1
-
-
0000170927
-
On the importance of being disordered
-
Dunker AK, Obradovic Z, Romero P, Kissinger C, Villafrance E: On the importance of being disordered. PDB Newsletter 1997, 81:3-5.
-
(1997)
PDB Newsletter
, vol.81
, pp. 3-5
-
-
Dunker, A.K.1
Obradovic, Z.2
Romero, P.3
Kissinger, C.4
Villafrance, E.5
-
2
-
-
0030976078
-
Cell biology: The importance of being unfolded
-
Plaxco KW, Gross M, Cell biology: The importance of being unfolded. Nature 1997, 386(6626):657-659.
-
(1997)
Nature
, vol.386
, Issue.6626
, pp. 657-659
-
-
Plaxco, K.W.1
Gross, M.2
-
3
-
-
0032749078
-
Intrinsically unstructured proteins: Reassessing the protein structure-function paradigm
-
Wright PE, Dyson HJ: Intrinsically unstructured proteins: reassessing the protein structure-function paradigm. J Mol Biol 1999, 293(2):321-331.
-
(1999)
J Mol Biol
, vol.293
, Issue.2
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
4
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J Mol Biol 2004, 337:635-645.
-
(2004)
J Mol Biol
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
Sodhi, J.S.2
McGuffin, L.J.3
Buxton, B.F.4
Jones, D.T.5
-
5
-
-
10844222539
-
Sequence patterns associated with disordered regions in proteins
-
Lise S, Jones DT. Sequence patterns associated with disordered regions in proteins. Proteins 2005, 58:144-150.
-
(2005)
Proteins
, vol.58
, pp. 144-150
-
-
Lise, S.1
Jones, D.T.2
-
6
-
-
84874664950
-
RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
-
June
-
Yang ZR, Thomson R, McNeil P, Esnouf RM: RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. Bioinformatics Advance Access Published. June 9, 2005
-
Bioinformatics Advance Access Published
, vol.9
, pp. 2005
-
-
Yang, Z.R.1
Thomson, R.2
McNeil, P.3
Esnouf, R.M.4
-
8
-
-
0000332920
-
Sequence data analysis for long disordered regions prediction in the Calcineurin family
-
Romero P, Obradovic Zoran, Dunker AK. Sequence data analysis for long disordered regions prediction in the Calcineurin family. Genome Informatics 1997, 8:110-124.
-
(1997)
Genome Informatics
, vol.8
, pp. 110-124
-
-
Romero, P.1
Obradovic, Z.2
Dunker, A.K.3
-
10
-
-
0242362157
-
Prediction of disordered regions in proteins from position specific scoring matrices
-
Jones DT, Ward JJ: Prediction of disordered regions in proteins from position specific scoring matrices. Proteins 2003, 53:573-578.
-
(2003)
Proteins
, vol.53
, pp. 573-578
-
-
Jones, D.T.1
Ward, J.J.2
-
11
-
-
0031616362
-
Protein disorder and the evolution of molecular recognition: Theory, predictions and observations
-
Dunker AK, Garner E, Guilliot S, Romero P, Albercht K, Hart J, Obradovic Z, Kissinger C, Villafranca JE: Protein disorder and the evolution of molecular recognition: theory, predictions and observations. Pac Symp Biocomput 1998, 3:473-484.
-
(1998)
Pac Symp Biocomput
, vol.3
, pp. 473-484
-
-
Dunker, A.K.1
Garner, E.2
Guilliot, S.3
Romero, P.4
Albercht, K.5
Hart, J.6
Obradovic, Z.7
Kissinger, C.8
Villafranca, J.E.9
-
12
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker AK, Brown CJ, Lawson JD, Iakoucheva LM, Obradovic Z: Intrinsic disorder and protein function. Biochemistry 2002, 41:6573-6582.
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradovic, Z.5
-
13
-
-
0030691703
-
Identifying disordered regions in proteins from amino acid sequence
-
Romero P, Obradovic Z, Kissinger C, Villafranca JE, Dunker AK: Identifying disordered regions in proteins from amino acid sequence. Proc IEEE Int Conf Neural Networks 1997, 1:90-95.
-
(1997)
Proc IEEE Int Conf Neural Networks
, vol.1
, pp. 90-95
-
-
Romero, P.1
Obradovic, Z.2
Kissinger, C.3
Villafranca, J.E.4
Dunker, A.K.5
-
14
-
-
0031633365
-
Thousands of proteins likely to have long disordered regions
-
Romero P, Obradovic Z, Kissinger C, Villafranca JE, Garner E, Guilliiot S, Dunker AK: Thousands of proteins likely to have long disordered regions. Pac Symp Biocomput 1998, 3:437-448.
-
(1998)
Pac Symp Biocomput
, vol.3
, pp. 437-448
-
-
Romero, P.1
Obradovic, Z.2
Kissinger, C.3
Villafranca, J.E.4
Garner, E.5
Guilliiot, S.6
Dunker, A.K.7
-
15
-
-
0242267500
-
Predicting intrinsic disorder from amino acid sequence
-
Obradovic Z, Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK: Predicting intrinsic disorder from amino acid sequence. Proteins 2003, 53:566-572.
-
(2003)
Proteins
, vol.53
, pp. 566-572
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Brown, C.J.5
Dunker, A.K.6
-
16
-
-
14544299774
-
Optimizing long intrinsic disorder predictiors with protein evolutionary information
-
Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK, Obradovic Z: Optimizing long intrinsic disorder predictiors with protein evolutionary information. Journal of Bioinformatics and Computational Biology 2005, 3:35-60.
-
(2005)
Journal of Bioinformatics and Computational Biology
, vol.3
, pp. 35-60
-
-
Peng, K.1
Vucetic, S.2
Radivojac, P.3
Brown, C.J.4
Dunker, A.K.5
Obradovic, Z.6
-
17
-
-
0002582635
-
Predicting binding regions within disordered proteins
-
Garner E, Romero P, Dunker AK Brown C, Obradovic Z: Predicting binding regions within disordered proteins. Genome Informatics 1999, 10:41-50.
-
(1999)
Genome Informatics
, vol.10
, pp. 41-50
-
-
Garner, E.1
Romero, P.2
Dunker, A.K.3
Brown, C.4
Obradovic, Z.5
-
18
-
-
18744405418
-
Prediction of unfolded segments in a protein sequence based on amino acid composition
-
Coeytaux K, Poupon A: Prediction of unfolded segments in a protein sequence based on amino acid composition. Bioinformatics 2005, 21:1891-1900.
-
(2005)
Bioinformatics
, vol.21
, pp. 1891-1900
-
-
Coeytaux, K.1
Poupon, A.2
-
19
-
-
0034669882
-
Why are "natively unfolded" proteins unstructured under physiologic conditions?
-
Uversky VN, Gillespie JR, Fink AL: Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 2000, 41:415-427.
-
(2000)
Proteins
, vol.41
, pp. 415-427
-
-
Uversky, V.N.1
Gillespie, J.R.2
Fink, A.L.3
-
20
-
-
0003380323
-
Predicting disordered regions for amino acid sequence: Common themes despite differing structural characterization
-
Garner E, Cannon P, Romero P, Obradovic Z, Dunker AK. Predicting disordered regions for amino acid sequence: common themes despite differing structural characterization. Genome Inform Ser Workshop Genome Inform 1998, 9:201-213.
-
(1998)
Genome Inform Ser Workshop Genome Inform
, vol.9
, pp. 201-213
-
-
Garner, E.1
Cannon, P.2
Romero, P.3
Obradovic, Z.4
Dunker, A.K.5
-
21
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero P, Obradovic Z, Li X, Garner EC, Brown CJ, Dunker AK: Sequence complexity of disordered protein. Proteins 2001, 42:38-48.
-
(2001)
Proteins
, vol.42
, pp. 38-48
-
-
Romero, P.1
Obradovic, Z.2
Li, X.3
Garner, E.C.4
Brown, C.J.5
Dunker, A.K.6
-
22
-
-
0041418213
-
Flavors of protein disorder
-
Vucetic S, Brown CJ, Dunker AK, Obradovic Z: Flavors of protein disorder. Proteins 2003, 52:573-584.
-
(2003)
Proteins
, vol.52
, pp. 573-584
-
-
Vucetic, S.1
Brown, C.J.2
Dunker, A.K.3
Obradovic, Z.4
-
23
-
-
0001913048
-
Predicting protein disorder for N-, C-, and internal regions
-
Li X Romero P, Rani M, Dunker AK Obradovic Z. Predicting protein disorder for N-, C-, and internal regions. Genome Inform Ser Workshop Genome Infor 1999, 10:30-40.
-
(1999)
Genome Inform Ser Workshop Genome Infor
, vol.10
, pp. 30-40
-
-
Li, X.1
Romero, P.2
Rani, M.3
Dunker, A.K.4
Obradovic, Z.5
-
24
-
-
33746987798
-
Predicting the protein disordered region using modified position specific scoring matrix
-
Shimizu K Hirose S, Noguchi T, Muraoka Y. Predicting the protein disordered region using modified position specific scoring matrix. Genome Informatics 2004:P150.
-
(2004)
Genome Informatics
-
-
Shimizu, K.1
Hirose, S.2
Noguchi, T.3
Muraoka, Y.4
-
25
-
-
0043130638
-
Prediction of boundaries between intrinsically ordered and disordered protein regions
-
Radivojac P, Obradovic Z, Brown CJ, Dunker AK. Prediction of boundaries between intrinsically ordered and disordered protein regions. Pac Symp Biocomput 2003, 8:216-227.
-
(2003)
Pac Symp Biocomput
, vol.8
, pp. 216-227
-
-
Radivojac, P.1
Obradovic, Z.2
Brown, C.J.3
Dunker, A.K.4
-
26
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucl Acids Res 2000, 28:235-242.
-
(2000)
Nucl Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
27
-
-
19944430267
-
DisProt: A database of protein disorder
-
Vucetic S, Obradovic Z, Vacic V, Radivojac P, Peng K, Lakoucheva LM, Cortese MS, Lawson JD, Brown CJ, Sikes JG, Newton CD, Dunker AK. DisProt: a database of protein disorder. Bioinformatics 2005, 21:137-140.
-
(2005)
Bioinformatics
, vol.21
, pp. 137-140
-
-
Vucetic, S.1
Obradovic, Z.2
Vacic, V.3
Radivojac, P.4
Peng, K.5
Lakoucheva, L.M.6
Cortese, M.S.7
Lawson, J.D.8
Brown, C.J.9
Sikes, J.G.10
Newton, C.D.11
Dunker, A.K.12
-
28
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein databases
-
Li W, Jaroszewski L, Godzik A: Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 2001, 17:282-283.
-
(2001)
Bioinformatics
, vol.17
, pp. 282-283
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
29
-
-
0036169928
-
Tolerating some redundancy significantly speeds up clustering of large proteins databases
-
Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large proteins databases. Bioinformatics 2002, 18:77-82.
-
(2002)
Bioinformatics
, vol.18
, pp. 77-82
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
30
-
-
0242267501
-
Evaluation of disorder predictions in CASP5
-
Melamud E, Moult J: Evaluation of disorder predictions in CASP5. Proteins 2003, 53:561-565.
-
(2003)
Proteins
, vol.53
, pp. 561-565
-
-
Melamud, E.1
Moult, J.2
-
31
-
-
30344451365
-
Assessment of disorder predictions in CASP6
-
Early View
-
Jin Y, Dunbrack RL: Assessment of disorder predictions in CASP6. Proteins 2005. Early View
-
(2005)
Proteins
-
-
Jin, Y.1
Dunbrack, R.L.2
-
32
-
-
3242891318
-
The DISOPRED server for the prediction of protein disorder
-
Ward JJ, McGuffin LJ, Bryson K Buxton BF, Jones DT: The DISOPRED server for the prediction of protein disorder. Bioinformatics 2004, 20:2138-2139.
-
(2004)
Bioinformatics
, vol.20
, pp. 2138-2139
-
-
Ward, J.J.1
McGuffin, L.J.2
Bryson, K.3
Buxton, B.F.4
Jones, D.T.5
-
33
-
-
19544387461
-
Improved method for predicting β-turn using support vector machine
-
Zhang Q, Yoon S, Welsh WJ: Improved method for predicting β-turn using support vector machine. Proteins 2005, 21:2370-2374.
-
(2005)
Proteins
, vol.21
, pp. 2370-2374
-
-
Zhang, Q.1
Yoon, S.2
Welsh, W.J.3
-
34
-
-
2542586190
-
Prediction of the bonding states of cysteines Using the support vector machines based on multiple feature vectors and cysteine state sequences
-
Chen YC, Lin YS, Line CJ, Hwang JK. Prediction of the bonding states of cysteines Using the support vector machines based on multiple feature vectors and cysteine state sequences. Proteins 2004, 55:1036-1042.
-
(2004)
Proteins
, vol.55
, pp. 1036-1042
-
-
Chen, Y.C.1
Lin, Y.S.2
Line, C.J.3
Hwang, J.K.4
-
35
-
-
2642587355
-
Prediction of transmembrane regions of β-barrel proteins using ANN- and SVM-based methods
-
Natt NK Kaur H, Raghava GPS: Prediction of transmembrane regions of β-barrel proteins using ANN- and SVM-based methods. Proteins 2004, 56:11-18.
-
(2004)
Proteins
, vol.56
, pp. 11-18
-
-
Natt, N.K.1
Kaur, H.2
Raghava, G.P.S.3
-
36
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztányi Z, Csizmok V, Tompa, Simon I: IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 2005, 21:3433-3434.
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, S.I.3
-
37
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
Dosztányi Z, Csizmok V, Tompa, Simon I: The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J Mol Biol 2005, 347:827-839.
-
(2005)
J Mol Biol
, vol.347
, pp. 827-839
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, S.I.3
-
38
-
-
27944488680
-
Accurate prediction of protein disordered regions by mining protein structure data
-
Cheng J, Sweredoski MJ, Baldi P: Accurate prediction of protein disordered regions by mining protein structure data. Data Mining and Knowledge Discovery 2005, 11:213-222.
-
(2005)
Data Mining and Knowledge Discovery
, vol.11
, pp. 213-222
-
-
Cheng, J.1
Sweredoski, M.J.2
Baldi, P.3
-
39
-
-
0242458482
-
Protein disorder prediction: Implications of structural proteomics
-
Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB: Protein disorder prediction: implications of structural proteomics. Structure (Camb) 2003, 11:1453-1459.
-
(2003)
Structure (Camb)
, vol.11
, pp. 1453-1459
-
-
Linding, R.1
Jensen, L.J.2
Diella, F.3
Bork, P.4
Gibson, T.J.5
Russell, R.B.6
-
40
-
-
24044515001
-
FoldIndex©: A simple tool to predict whether a given protein sequence is intrinsically unfolded
-
Prilusky J, Felder CE, Zeev-BenMordehai T, Rydberg EH, Man O, Beckmann JS, Silman I, Summan JL: FoldIndex©: a simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics 2005, 21:3435-3438.
-
(2005)
Bioinformatics
, vol.21
, pp. 3435-3438
-
-
Prilusky, J.1
Felder, C.E.2
Zeev-BenMordehai, T.3
Rydberg, E.H.4
Man, O.5
Beckmann, J.S.6
Silman, I.7
Summan, J.L.8
-
41
-
-
0042622240
-
GlobPlot: Exploring protein sequences for globularity and disorder
-
Linding R, Russell RB, Neduva, V, Gibson TJ: GlobPlot: exploring protein sequences for globularity and disorder. Nucl Acids Res 2003, 31:3701-3708.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 3701-3708
-
-
Linding, R.1
Russell, R.B.2
Neduva, V.3
Gibson, T.J.4
-
42
-
-
0036402827
-
Identification and functions of usefully disordered proteins
-
Dunker AK, Brown CJ, Obradovic Z: Identification and functions of usefully disordered proteins. Adv Protein Chem 2002,62:25-49.
-
(2002)
Adv Protein Chem
, vol.62
, pp. 25-49
-
-
Dunker, A.K.1
Brown, C.J.2
Obradovic, Z.3
-
43
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaeffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucl Acids Res 1997, 25(7):3389-3402.
-
(1997)
Nucl Acids Res
, vol.25
, Issue.7
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaeffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
44
-
-
19544387461
-
Improved method for predicting β-turn using support vector machine
-
Zhang Q, Yoon S, Welsh WJ: Improved method for predicting β-turn using support vector machine. Bioinformatics 2005, 21:2370-2374.
-
(2005)
Bioinformatics
, vol.21
, pp. 2370-2374
-
-
Zhang, Q.1
Yoon, S.2
Welsh, W.J.3
-
45
-
-
84874661886
-
-
Chemical classifications
-
Chemical classifications [http://prowl.rockefeller.edu/aainfo/pchem.htm].
-
-
-
-
46
-
-
84874645685
-
-
QuickRBF
-
QuickRBF [http://muse.csie.ntu.edu.tw/~yien/quickrbf/index.php]
-
-
-
|