-
1
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson HJ, Wright PE. Intrinsically unstructured proteins and their functions. Nat Rev Mol Cell Biol 2005;6:197-208.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
2
-
-
0032749078
-
Intrinsically unstructured proteins: Reassessing the protein structure-function paradigm
-
Wright PE, Dyson HJ. Intrinsically unstructured proteins: reassessing the protein structure-function paradigm. J Mol Biol 1999;293:321-331.
-
(1999)
J Mol Biol
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
3
-
-
0035022941
-
Intrinsically disordered protein
-
Dunker AK, Lawson JD, Brown CJ, Williams RM, Romero P, Oh JS, Oldfield CJ, Campen AM, Ratliff CM, Hipps KW, Ausio J, Nissen MS, Reeves R, Kang C, Kissinger CR, Bailey RW, Griswold MD, Chiu W, Garner EC, Obradovic Z. Intrinsically disordered protein. J Mol Graph Model 2001;19:26-59.
-
(2001)
J Mol Graph Model
, vol.19
, pp. 26-59
-
-
Dunker, A.K.1
Lawson, J.D.2
Brown, C.J.3
Williams, R.M.4
Romero, P.5
Oh, J.S.6
Oldfield, C.J.7
Campen, A.M.8
Ratliff, C.M.9
Hipps, K.W.10
Ausio, J.11
Nissen, M.S.12
Reeves, R.13
Kang, C.14
Kissinger, C.R.15
Bailey, R.W.16
Griswold, M.D.17
Chiu, W.18
Garner, E.C.19
Obradovic, Z.20
more..
-
4
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa P. Intrinsically unstructured proteins. Trends Biochem Sci 2002;27:527-533.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
5
-
-
0036153571
-
What does it mean to be natively unfolded?
-
Uversky VN. What does it mean to be natively unfolded? Eur J Biochem 2002;269:2-12.
-
(2002)
Eur J Biochem
, vol.269
, pp. 2-12
-
-
Uversky, V.N.1
-
6
-
-
0242458482
-
Protein disorder prediction: Implications for structural proteomics
-
Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB. Protein disorder prediction: implications for structural proteomics. Structure (Camb) 2003;11:1453-1459.
-
(2003)
Structure (Camb)
, vol.11
, pp. 1453-1459
-
-
Linding, R.1
Jensen, L.J.2
Diella, F.3
Bork, P.4
Gibson, T.J.5
Russell, R.B.6
-
8
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J Mol Biol 2004;337:635-645.
-
(2004)
J Mol Biol
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
Sodhi, J.S.2
McGuffin, L.J.3
Buxton, B.F.4
Jones, D.T.5
-
9
-
-
0041620131
-
NORSp: Predictions of long regions without regular secondary structure
-
Liu J, Rost B. NORSp: predictions of long regions without regular secondary structure. Nucleic Acids Res 2003;31:3833-3835.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3833-3835
-
-
Liu, J.1
Rost, B.2
-
10
-
-
0242267501
-
Evaluation of disorder predictions in CASP5
-
Melamud E, Moult J. Evaluation of disorder predictions in CASP5. Proteins 2003;53(Suppl 6):561-565.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 561-565
-
-
Melamud, E.1
Moult, J.2
-
11
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker AK, Brown CJ, Lawson JD, Iakoucheva LM, Obradovic Z. Intrinsic disorder and protein function. Biochemistry 2002;41: 6573-6582.
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradovic, Z.5
-
12
-
-
3442902456
-
The role of structural disorder in the function of RNA and protein chaperones
-
Tompa P, Csermely P. The role of structural disorder in the function of RNA and protein chaperones. FASEB J 2004;18:1169-1175.
-
(2004)
FASEB J
, vol.18
, pp. 1169-1175
-
-
Tompa, P.1
Csermely, P.2
-
13
-
-
0036402450
-
Unfolded proteins
-
Richards FM, Eisenerg DS, Kuriyan J, editors. New York: Academic Press
-
Rose GD. Unfolded proteins. In: Richards FM, Eisenerg DS, Kuriyan J, editors. Advances in protein chemistry, 62. New York: Academic Press; 2002. p. xv-xxi.
-
(2002)
Advances in Protein Chemistry
, vol.62
-
-
Rose, G.D.1
-
14
-
-
24944511034
-
Natively disordered proteins
-
Buchner J, Kiefhaber T, editors. Weinheim: Wiley-VCH
-
Daughdrill GW, Pielak GJ, Uversky VN, Cortese MS, Dunker AK. Natively disordered proteins. In: Buchner J, Kiefhaber T, editors. Handbook of protein folding: Weinheim: Wiley-VCH; 2005. p 271-353.
-
(2005)
Handbook of Protein Folding
, pp. 271-353
-
-
Daughdrill, G.W.1
Pielak, G.J.2
Uversky, V.N.3
Cortese, M.S.4
Dunker, A.K.5
-
15
-
-
4744349987
-
Combining prediction, computation and experiment for the characterization of protein disorder
-
Bracken C, Iakoucheva LM, Romero PR, Dunker AK. Combining prediction, computation and experiment for the characterization of protein disorder. Curr Opin Struct Biol 2004;14:570-576.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 570-576
-
-
Bracken, C.1
Iakoucheva, L.M.2
Romero, P.R.3
Dunker, A.K.4
-
16
-
-
0036408751
-
Intrinsic disorder in cell-signaling and cancer-associated proteins
-
Iakoucheva LM, Brown CJ, Lawson JD, Obradovic Z, Dunker AK. Intrinsic disorder in cell-signaling and cancer-associated proteins. J Mol Biol 2002;323:573-584.
-
(2002)
J Mol Biol
, vol.323
, pp. 573-584
-
-
Iakoucheva, L.M.1
Brown, C.J.2
Lawson, J.D.3
Obradovic, Z.4
Dunker, A.K.5
-
17
-
-
13644257647
-
Comparing and combining predictors of mostly disordered proteins
-
Oldfield CJ, Cheng Y, Cortese MS, Brown CJ, Uversky VN, Dunker AK. Comparing and combining predictors of mostly disordered proteins. Biochemistry 2005;44:1989-2000.
-
(2005)
Biochemistry
, vol.44
, pp. 1989-2000
-
-
Oldfield, C.J.1
Cheng, Y.2
Cortese, M.S.3
Brown, C.J.4
Uversky, V.N.5
Dunker, A.K.6
-
18
-
-
17844399803
-
Addressing the intrinsic disorder bottleneck in structural proteomics
-
Oldfield CJ, Ulrich EL, Cheng Y, Dunker AK, Markley JL. Addressing the intrinsic disorder bottleneck in structural proteomics. Proteins 2005;59:444-453.
-
(2005)
Proteins
, vol.59
, pp. 444-453
-
-
Oldfield, C.J.1
Ulrich, E.L.2
Cheng, Y.3
Dunker, A.K.4
Markley, J.L.5
-
19
-
-
3543115598
-
NMR for structural proteomics of Thermotoga maritima: Screening and structure determination
-
Peti W, Etezady-Esfarjani T, Herrmann T, Klock HE, Lesley SA, Wuthrich K. NMR for structural proteomics of Thermotoga maritima: screening and structure determination. J Struct Funct Genomics 2004;5:205-215.
-
(2004)
J Struct Funct Genomics
, vol.5
, pp. 205-215
-
-
Peti, W.1
Etezady-Esfarjani, T.2
Herrmann, T.3
Klock, H.E.4
Lesley, S.A.5
Wuthrich, K.6
-
20
-
-
18744405418
-
Prediction of unfolded segments in a protein sequence based on amino acid composition
-
Coeytaux K, Poupon A. Prediction of unfolded segments in a protein sequence based on amino acid composition. Bioinformatics 2005;21:1891-1900.
-
(2005)
Bioinformatics
, vol.21
, pp. 1891-1900
-
-
Coeytaux, K.1
Poupon, A.2
-
21
-
-
24044459339
-
Prediction of natively disordered regions in proteins using a bio-basis function neural network
-
Thomson R, Esnouf R. Prediction of natively disordered regions in proteins using a bio-basis function neural network. Lecture Notes Comput Sci 2004;3177:108-116.
-
(2004)
Lecture Notes Comput Sci
, vol.3177
, pp. 108-116
-
-
Thomson, R.1
Esnouf, R.2
-
22
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I. The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J Mol Biol 2005;347:827-839.
-
(2005)
J Mol Biol
, vol.347
, pp. 827-839
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
23
-
-
0242267500
-
Predicting intrinsic disorder from amino acid sequence
-
Obradovic Z, Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK. Predicting intrinsic disorder from amino acid sequence. Proteins 2003;53(Suppl 6):566-572.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 566-572
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Brown, C.J.5
Dunker, A.K.6
-
24
-
-
0036402827
-
Identification and functions of usefully disordered proteins
-
Dunker AK, Brown CJ, Obradovic Z. Identification and functions of usefully disordered proteins. Adv Protein Chem 2002;62:25-49.
-
(2002)
Adv Protein Chem
, vol.62
, pp. 25-49
-
-
Dunker, A.K.1
Brown, C.J.2
Obradovic, Z.3
-
25
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero P, Obradovic Z, Li X, Garner EC, Brown CJ, Dunker AK. Sequence complexity of disordered protein. Proteins 2001;42:38-48.
-
(2001)
Proteins
, vol.42
, pp. 38-48
-
-
Romero, P.1
Obradovic, Z.2
Li, X.3
Garner, E.C.4
Brown, C.J.5
Dunker, A.K.6
-
27
-
-
14544299774
-
Optimizing long intrinsic disorder predictors with protein evolutionary information
-
Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK, Obradovic Z. Optimizing long intrinsic disorder predictors with protein evolutionary information. J Bioinform Comput Biol 2005;3:35-60.
-
(2005)
J Bioinform Comput Biol
, vol.3
, pp. 35-60
-
-
Peng, K.1
Vucetic, S.2
Radivojac, P.3
Brown, C.J.4
Dunker, A.K.5
Obradovic, Z.6
-
28
-
-
0030691703
-
Identifying disordered regions in proteins from amino acid sequences
-
Romero P, Obradovic Z, Kissinger CR, Villafranca JE, Dunker AK. Identifying disordered regions in proteins from amino acid sequences. IEEE Int Conf Neural Netw 1997;1:90-95.
-
(1997)
IEEE Int Conf Neural Netw
, vol.1
, pp. 90-95
-
-
Romero, P.1
Obradovic, Z.2
Kissinger, C.R.3
Villafranca, J.E.4
Dunker, A.K.5
-
29
-
-
0043130638
-
Prediction of boundaries between intrinsically ordered and disordered protein regions
-
Radivojac P, Obradovic Z, Brown CJ, Dunker AK. Prediction of boundaries between intrinsically ordered and disordered protein regions. Pac Symp Biocomput 2003;8:216-227.
-
(2003)
Pac Symp Biocomput
, vol.8
, pp. 216-227
-
-
Radivojac, P.1
Obradovic, Z.2
Brown, C.J.3
Dunker, A.K.4
-
30
-
-
0347364621
-
Protein flexibility and intrinsic disorder
-
Radivojac P, Obradovic Z, Smith DK, Zhu G, Vucetic S, Brown CJ, Lawson JD, Dunker AK. Protein flexibility and intrinsic disorder. Protein Sci 2004;13:71-80.
-
(2004)
Protein Sci
, vol.13
, pp. 71-80
-
-
Radivojac, P.1
Obradovic, Z.2
Smith, D.K.3
Zhu, G.4
Vucetic, S.5
Brown, C.J.6
Lawson, J.D.7
Dunker, A.K.8
-
31
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The protein data bank. Nucleic Acids Res 2000;28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
33
-
-
19944430267
-
DisProt: A database of protein disorder
-
Vucetic S, Obradovic Z, Vacic V, Radivojac P, Peng K, Iakoucheva LM, Cortese MS, Lawson JD, Brown CJ, Sikes JG, Newton CD, Dunker AK. DisProt: a database of protein disorder. Bioinformatics 2005;21:137-140.
-
(2005)
Bioinformatics
, vol.21
, pp. 137-140
-
-
Vucetic, S.1
Obradovic, Z.2
Vacic, V.3
Radivojac, P.4
Peng, K.5
Iakoucheva, L.M.6
Cortese, M.S.7
Lawson, J.D.8
Brown, C.J.9
Sikes, J.G.10
Newton, C.D.11
Dunker, A.K.12
-
34
-
-
0037407015
-
Improved amino acid flexibility parameters
-
Smith DK, Radivojac P, Obradovic Z, Dunker AK, Zhu G. Improved amino acid flexibility parameters. Protein Sci 2003;12: 1060-1072.
-
(2003)
Protein Sci
, vol.12
, pp. 1060-1072
-
-
Smith, D.K.1
Radivojac, P.2
Obradovic, Z.3
Dunker, A.K.4
Zhu, G.5
-
35
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
Wootton JC, Federhen S. Statistics of local complexity in amino acid sequences and sequence databases. Comput Chem 1993;17: 149-163.
-
(1993)
Comput Chem
, vol.17
, pp. 149-163
-
-
Wootton, J.C.1
Federhen, S.2
-
36
-
-
0034669882
-
Why are "natively unfolded" proteins unstructured under physiologic conditions?
-
Uversky VN, Gillespie JR, Fink AL. Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 2000;41:415-427.
-
(2000)
Proteins
, vol.41
, pp. 415-427
-
-
Uversky, V.N.1
Gillespie, J.R.2
Fink, A.L.3
-
37
-
-
0028361031
-
Accuracy of protein flexibility predictions
-
Vihinen M, Torkkila E, Riikonen P. Accuracy of protein flexibility predictions. Proteins 1994;19:141-149.
-
(1994)
Proteins
, vol.19
, pp. 141-149
-
-
Vihinen, M.1
Torkkila, E.2
Riikonen, P.3
-
38
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
39
-
-
0029889988
-
PHD: Predicting one-dimensional protein structure by profile-based neural networks
-
Rost B. PHD: predicting one-dimensional protein structure by profile-based neural networks. Methods Enzymol 1996;266:525-539.
-
(1996)
Methods Enzymol
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
40
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999;292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
42
-
-
0020524559
-
A method of comparing the areas under receiver operating characteristic curves derived from the same cases
-
Hanley JA, McNeil BJ. A method of comparing the areas under receiver operating characteristic curves derived from the same cases. Radiology 1983;148:839-843.
-
(1983)
Radiology
, vol.148
, pp. 839-843
-
-
Hanley, J.A.1
McNeil, B.J.2
-
43
-
-
30344451365
-
Assessment of disorder predictions in CASP6
-
Jin Y, Dunbrack RL Jr. Assessment of disorder predictions in CASP6. Proteins 2005;Suppl 7:167-175.
-
(2005)
Proteins
, vol.7
, pp. 167-175
-
-
Jin, Y.1
Dunbrack Jr., R.L.2
-
44
-
-
13444262384
-
CDD: A conserved domain database for protein classification
-
Marchler-Bauer A, Anderson JB, Cherukuri PF, DeWeese-Scott C, Geer LY, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Marchler GH, Mullokandov M, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Yamashita RA, Yin JJ, Zhang D, Bryant SH. CDD: a conserved domain database for protein classification. Nucleic Acids Res 2005;33:D192-D196.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Cherukuri, P.F.3
Deweese-Scott, C.4
Geer, L.Y.5
Gwadz, M.6
He, S.7
Hurwitz, D.I.8
Jackson, J.D.9
Ke, Z.10
Lanczycki, C.J.11
Liebert, C.A.12
Liu, C.13
Lu, F.14
Marchler, G.H.15
Mullokandov, M.16
Shoemaker, B.A.17
Simonyan, V.18
Song, J.S.19
Thiessen, P.A.20
Yamashita, R.A.21
Yin, J.J.22
Zhang, D.23
Bryant, S.H.24
more..
-
45
-
-
4143107222
-
Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers
-
Gunasekaran K, Tsai CJ, Nussinov R. Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers. J Mol Biol 2004; 341:1327-1341.
-
(2004)
J Mol Biol
, vol.341
, pp. 1327-1341
-
-
Gunasekaran, K.1
Tsai, C.J.2
Nussinov, R.3
|