Engineering acidic Streptomyces rubiginosus D-xylose isomerase by rational enzyme design

Protein Engineering, Design and Selection

Volumn 27, Issue 2, 2014, Pages 59-64

  Waltman, Mary Jo ^a   Yang, Zamin Koo ^b   Langan, Paul ^b   Graham, David E ^b   Kovalevsky, Andrey ^b  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

d xylose isomerase; enzyme kinetics; protein engineering; rational design; site directed mutagenesis

Indexed keywords

BIO-ETHANOL PRODUCTION; ISOMERASES; LIGNOCELLULOSIC BIOMASS; PHYSIOLOGICAL SUBSTRATE; PROTEIN ENGINEERING; RATIONAL DESIGN; SITE DIRECTED MUTAGENESIS; YEAST FERMENTATION;

AMINO ACIDS; BACTERIA; DESIGN; ENZYME KINETICS; HYDROGEN BONDS; YEAST;

BIOCHEMICAL ENGINEERING;

ASPARTIC ACID; HISTIDINE; XYLOSE ISOMERASE;

AMINO ACID TRANSPORT; AMINO TERMINAL SEQUENCE; ARTICLE; ENZYME ENGINEERING; ENZYME KINETICS; ENZYME PURIFICATION; HYDROGEN BOND; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN EXPRESSION; STREPTOMYCES; STREPTOMYCES RUBIGINOSUS;

D-XYLOSE ISOMERASE; ENZYME KINETICS; PROTEIN ENGINEERING; RATIONAL DESIGN; SITE-DIRECTED MUTAGENESIS;

ALDOSE-KETOSE ISOMERASES; CATALYTIC DOMAIN; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PROTEIN CONFORMATION; STREPTOMYCES; XYLOSE;

EID: 84892941099     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/gzt062     Document Type: Article

References (47)

1. Allen, K.N., Lavie, A., Glasfeld, A., Petsko, G.A. and Ringe, D. (1994) Biochemistry, 33, 1481-1487.
2. Bhosale, S.H., Rao, M.B. and Deshpande, V.V. (1996) Microbiol. Rev., 60, 280-300.
3. Callens, M., Kersters-Hilderson, H., Van Opstal, O. and De Bruyne, C.K. (1986) Enzyme Microb. Technol., 8, 696-700.
4. Cha, J. and Batt, C.A. (1995) Mol. Cells, 8, 374-382.
5. Cha, J., Cho, Y., Whitaker, R.D., Carrell, H.L., Glusker, J.P., Karplus, P.A. and Batt, C.A. (1994) J. Biol. Chem., 269, 2687-2694.
6. Chambron, J.-C. and Meyer, M. (2009) Chem. Soc. Rev., 38, 1663-1673.
7. Chandrakant, P. and Bisaria, V.S. (2000) Biotechnol. Bioprocess Eng., 5, 32-39.
8. Chiang, L.-C., Gong, C.-S., Chen, L.-F. and Tsao, G.T. (1981) Appl. Environ. Microbiol., 42, 284-289.
9. Collyer, C.A., Henrick, K. and Blow, D.M. (1990) J. Mol. Biol., 212, 211-235.
10. Collyer, C.A., Goldberg, J.D., Viehmann, H., Blow, D.M., Ramsden, N.G., Fleet, G.W.J., Montgomery, F.J. and Grice, P. (1992) Biochemistry, 31, 12211-12218.
11. Fenn, T.D., Ringe, D. and Petsko, G.A. (2004) Biochemistry, 43, 6464-6474.
12. Fuxreiter, M., Böcskei, Z., Szeibert, A., Szabó, E., Dallmann, G., Náray-Szabó, G. and Asbóth, B. (1997) Proteins, 28, 183-193.
13. Gong, C.-S., Chen, L.-F., Flickinger, M.C., Chiang, L.-C. and Tsao, G.T. (1981) Appl. Environ. Microbiol., 41, 430-436.
14. Hahn-Hägerdal, B., Karhumaa, K., Jeppsson, M. and Gorwa-Grauslund, M. (2007) In Olsson, L. (ed), Biofuels. Springer, Berlin, Heidelberg, pp. 147-177.
15. Hochster, R.M. and Watson, R.W. (1954) Arch. Biochem. Biophys., 48, 120-129.
16. Jänis, J., Pasanen, S., Rouvinen, J. and Vainiotalo, P. (2008) J. Mass Spectrom., 43, 1376-1380.
17. Jeffries, T.W. and Jin, Y.S. (2004) Appl. Microbiol. Biotechnol., 63, 495-509.
18. Jenkins, J., Janin, J., Rey, F., Chiadmi, M., Van Tilbeurgh, H., Lasters, I., De Maeyer, M., Ven Belle, D. and Wodak, S.J. (1992) Biochemistry, 31, 5449-5458.
19. Katz, A.K., Li, X., Carrell, H.L., Hanson, B.L., Langan, P., Coates, L., Schoenborn, B.P., Glusker, J.P. and Bunick, G.J. (2006) Proc. Natl Acad. Sci. USA, 103, 8342-8347.
20. Kersters-Hilderson, H., Callens, M., Van Opstal, O., Vangrysperre, W. and De Bruyne, C.K. (1987) Enzyme Microb. Technol., 9, 145-148.
21. Kovalevsky, A.Y., Katz, A.K., Carrell, H.L., et al. (2008) Biochemistry, 47, 7595-7597.
22. Kovalevsky, A.Y., Hanson, L., Fisher, S.Z., et al. (2010) Structure, 18, 688-699.
23. Kovalevsky, A.Y., Hanson, B.L., Mason, S.A., et al. (2011) Angew. Chem. Int. Ed. Engl., 50, 7520-7523.
24. Kuyper, M., Harhangi, H.R., Stave, A.K., et al. (2003) FEMS Yeast Res., 4, 69-78.
25. Lambeir, A.M., Lauwereys, M., Stanssens, P., Mrabet, N.T., Snauwaert, J., Van Tilbeurgh, H., Matthyssens, G., Lasters, I. and De Maeyer, M. (1992) Biochemistry, 31, 5459-5466.
26. Lee, S.-M., Jellison, T. and Alper, H.S. (2012) Appl. Environ. Microbiol., 78, 5708-5716.
27. Li, B., Relue, P. and Varanasi, S. (2012) Green Chem., 14, 2436-2444.
28. Lynd, L.R., Cushman, J.H., Nichols, R.J. and Wyman, C.E. (1991) Science, 251, 1318-1323.
29. Matsushika, A., Inoue, H., Kodaki, T. and Sawayama, S. (2009) Appl. Microbiol. Biotechnol., 84, 37-53.
30. Parachin, N.S., Bergdahl, B., van Niel, E.W.J. and Gorwa-Grauslund, M.F. (2011) Metab. Eng., 13, 508-517.
31. Rao, K., Chelikani, S., Relue, P. and Varanasi, S. (2008) Appl. Biochem. Biotechnol., 146, 101-117.
32. Schray, K.J. and Mildvan, A.S. (1972) J.Biol. Chem., 247, 2034-2037.
33. Siddiqui, K.S., Loviny-Anderton, T., Rangarajan, M. and Hartley, B.S. (1993) Biochem. J., 296, 685-691.
34. Silva, C.R., Zangirolami, T.C., Rodrigues, J.P., Matugi, K., Giordano, R.C. and Giordano, R.L.C. (2012) Enzyme Microb. Technol., 50, 35-42.
35. Somerville, C., Bauer, S., Brininstool, G., et al. (2004) Science, 306, 2206-2211.
36. Sriprapundh, D., Vieille, C. and Zeikus, J.G. (2003) Protein Eng., 16, 683-690.
37. Toteva, M.M., Silvaggi, N.R., Allen, K.N. and Richard, J.P. (2011) Biochemistry, 50, 10170-10181.
38. van Bastelaere, P., Vangrysperre, W. and Kersters-Hilderson, H. (1991) Biochem. J., 278, 285-292.
39. van Bastelaere, P.B., Kersters-Hilderson, H.L. and Lambeir, A.M. (1995) Biochem. J., 307, 135-142.
40. Van Tilbeurgh, H., Jenkins, J., Chiadmi, M., Janin, J., Wodak, S.J., Mrabet, N.T. and Lambeir, A.M. (1992) Biochemistry, 31, 5467-5471.
41. Van Vleet, J.H. and Jeffries, T.W. (2009) Curr. Opin. Biotechnol., 20, 300-306.
42. Vongsuvanlert, V. and Tani, Y. (1988) Agric. Biol. Chem., 52, 1817-1824.
43. Walfridsson, M., Bao, X., Anderlund, M., Lilius, G., Bülow, L. and Hahn-Hägerdal, B. (1996) Appl. Environ. Microbiol., 62, 4648-4651.
44. Whitaker, R.D., Cho, Y., Cha, J., Carrell, H.L., Glusker, J.P., Karplus, P.A. and Batt, C.A. (1995) J. Biol. Chem., 270, 22895-22906.
45. Whitlow, M., Howard, A.J., Finzel, B.C., Poulos, T.L., Winborne, E. and Gilliland, G.L. (1991) Proteins, 9, 153-173.
46. Yuan, D., Rao, K., Relue, P. and Varanasi, S. (2011) Bioresour. Technol., 102, 3246-3253.
47. Zhou, H., Cheng, J.-S., Wang, B.L., Fink, G.R. and Stephanopoulos, G. (2012) Metab. Eng., 14, 611-622.