-
1
-
-
0024286981
-
Metal ion binding to D-xylose isomerase from Streptomyces violacoeruber
-
Callens, M., Tomme, P., Kersters-Hilderson, H., Cornelis, W., Vangrysperre, W., De Bruyne, C.K. Metal ion binding to D-xylose isomerase from Streptomyces violacoeruber. Biochem. J. 250:285-291, 1988.
-
(1988)
Biochem. J.
, vol.250
, pp. 285-291
-
-
Callens, M.1
Tomme, P.2
Kersters-Hilderson, H.3
Cornelis, W.4
Vangrysperre, W.5
De Bruyne, C.K.6
-
2
-
-
0024256729
-
Structural analysis of the 2.8 Å model of xylose isomerase from Actinoplanes missouriensis
-
Rey, F., Jenkins, J., Janin, J., Lasters, I., Alard, P., Claesens, M., Matthyessens, G., Wodak, S. Structural analysis of the 2.8 Å model of xylose isomerase from Actinoplanes missouriensis. Proteins 4:165-173, 1988.
-
(1988)
Proteins
, vol.4
, pp. 165-173
-
-
Rey, F.1
Jenkins, J.2
Janin, J.3
Lasters, I.4
Alard, P.5
Claesens, M.6
Matthyessens, G.7
Wodak, S.8
-
3
-
-
0026631355
-
Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites
-
Jenkins, J., Janin, J., Rey, F., Chiadmi, M., van Tilbeurgh, H., Lasters, I., Maeyer, M.D., Belle, D.V., Wodak, S., Lauwereys, M., Stanssens, P., Mrabet, N.T., Snauwaert, J., Lambeir, A.M. Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites. Biochemistry 31:5449-5458, 1992.
-
(1992)
Biochemistry
, vol.31
, pp. 5449-5458
-
-
Jenkins, J.1
Janin, J.2
Rey, F.3
Chiadmi, M.4
Van Tilbeurgh, H.5
Lasters, I.6
Maeyer, M.D.7
Belle, D.V.8
Wodak, S.9
Lauwereys, M.10
Stanssens, P.11
Mrabet, N.T.12
Snauwaert, J.13
Lambeir, A.M.14
-
4
-
-
0001304049
-
X-ray analysis of D-xylose isomerase at 1.9 Å: Native enzyme in complex with substrate and with a mechanism-designed inactivator
-
Carrell, H.L., Glusker, J.P., Burger, V., Manfre, F., Tritsch, D., Biellmann, J.-F. X-ray analysis of D-xylose isomerase at 1.9 Å: Native enzyme in complex with substrate and with a mechanism-designed inactivator. Proc. Natl. Acad. Sci. U.S.A. 86:4440-4444, 1989.
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 4440-4444
-
-
Carrell, H.L.1
Glusker, J.P.2
Burger, V.3
Manfre, F.4
Tritsch, D.5
Biellmann, J.-F.6
-
5
-
-
0025974544
-
A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 Å Streptomyces rubiginosus structures with xylitol and D-xylose
-
Whitlow, M., Howard, A.J., Finzel, B.C., Poulos, T.L., Winborne, E., Gilliland, G.L. A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 Å Streptomyces rubiginosus structures with xylitol and D-xylose. Proteins 9:153-173, 1991.
-
(1991)
Proteins
, vol.9
, pp. 153-173
-
-
Whitlow, M.1
Howard, A.J.2
Finzel, B.C.3
Poulos, T.L.4
Winborne, E.5
Gilliland, G.L.6
-
6
-
-
0024362334
-
Structures of D-xylose isomerase from Arthrobacter strain B3728 containing the inhibitors xylitol and D-sorbitol at 2.5 Å and 2.3 Å resolution, respectively
-
Henrick, K., Collyer, C.A., Blow, D.M. Structures of D-xylose isomerase from Arthrobacter strain B3728 containing the inhibitors xylitol and D-sorbitol at 2.5 Å and 2.3 Å resolution, respectively. J. Mol. Biol. 208:129-157, 1989.
-
(1989)
J. Mol. Biol.
, vol.208
, pp. 129-157
-
-
Henrick, K.1
Collyer, C.A.2
Blow, D.M.3
-
7
-
-
0025320312
-
Mechanism for aldose-ketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift
-
Collyer, C.A., Henrick, K., Blow, D.M. Mechanism for aldose-ketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift. J. Mol. Biol. 212:211-235, 1990.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 211-235
-
-
Collyer, C.A.1
Henrick, K.2
Blow, D.M.3
-
8
-
-
0023736673
-
X-ray Laue diffraction from crystals of xylose isomerase
-
Farber, G.K., Machin, P., Almo, S.C., Petsko, G.A., Hajdu, J. X-ray Laue diffraction from crystals of xylose isomerase. Proc. Natl. Acad. Sci. U.S.A. 85:112-118, 1988.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 112-118
-
-
Farber, G.K.1
Machin, P.2
Almo, S.C.3
Petsko, G.A.4
Hajdu, J.5
-
9
-
-
0028197040
-
Isotopic exchange plus substrate and inhibition kinetics of D-xylose isomerase do not support a proton-transfer mechanism
-
Allen, K.N., Lavie, A., Farber, G.K., Glasfeld, A., Petsko, G.A., Ringe, D. Isotopic exchange plus substrate and inhibition kinetics of D-xylose isomerase do not support a proton-transfer mechanism. Biochemistry 33:1481-1487, 1994.
-
(1994)
Biochemistry
, vol.33
, pp. 1481-1487
-
-
Allen, K.N.1
Lavie, A.2
Farber, G.K.3
Glasfeld, A.4
Petsko, G.A.5
Ringe, D.6
-
10
-
-
0028953745
-
Design, synthesis, and characterization of a potent xylose isomerase inhibitor, D-threonohydroxamic acid, and high-resolution X-ray crystallographic structure of the enzyme-inhibitor complex
-
Allen, K.N., Lavie, A., Petsko, G.A., Ringe, D. Design, synthesis, and characterization of a potent xylose isomerase inhibitor, D-threonohydroxamic acid, and high-resolution X-ray crystallographic structure of the enzyme-inhibitor complex. Biochemistry 34:3742-3749, 1995.
-
(1995)
Biochemistry
, vol.34
, pp. 3742-3749
-
-
Allen, K.N.1
Lavie, A.2
Petsko, G.A.3
Ringe, D.4
-
11
-
-
0026603050
-
Mechanism of D-fructose isomerization by Arthrobacter D-xylose isomerase
-
Rangarajan, M., Hartley, B.S. Mechanism of D-fructose isomerization by Arthrobacter D-xylose isomerase. Biochem. J. 283:223-233, 1992.
-
(1992)
Biochem. J.
, vol.283
, pp. 223-233
-
-
Rangarajan, M.1
Hartley, B.S.2
-
12
-
-
0026734531
-
Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 2. Site-directed mutagenesis of the xylose binding site
-
Lambeir, A.M., Lauwereys, M., Stanssens, P., Mrabet, N.T., Snauwaert, J., van Tilbeurgh, H., Matthyssens, G., Lasters, I., Maeyer, M.D., Wodak, S., Jenkins, J., Chiadmi, M., Janin, J. Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 2. Site-directed mutagenesis of the xylose binding site. Biochemistry 31:5459-5466, 1992.
-
(1992)
Biochemistry
, vol.31
, pp. 5459-5466
-
-
Lambeir, A.M.1
Lauwereys, M.2
Stanssens, P.3
Mrabet, N.T.4
Snauwaert, J.5
Van Tilbeurgh, H.6
Matthyssens, G.7
Lasters, I.8
Maeyer, M.D.9
Wodak, S.10
Jenkins, J.11
Chiadmi, M.12
Janin, J.13
-
13
-
-
0026723802
-
Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 3. Changing metal specificity and the pH profile by site-directed mutagenesis
-
van Tilbeurgh, H., Jenkins, J., Chiadmi, M., Janin, J., Wodak, S., Mrabet, N.T., Lambeir, A.M. Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 3. Changing metal specificity and the pH profile by site-directed mutagenesis. Biochemistry 31:5467-5471, 1992.
-
(1992)
Biochemistry
, vol.31
, pp. 5467-5471
-
-
Van Tilbeurgh, H.1
Jenkins, J.2
Chiadmi, M.3
Janin, J.4
Wodak, S.5
Mrabet, N.T.6
Lambeir, A.M.7
-
14
-
-
0026750215
-
Molecular mechanics simulations of a conformational rearrangement of D-xylose in the active site of D-xylose isomerase
-
Smart, O.S., Akins, J., Blow, D.M. Molecular mechanics simulations of a conformational rearrangement of D-xylose in the active site of D-xylose isomerase. Proteins 13:100-111, 1992.
-
(1992)
Proteins
, vol.13
, pp. 100-111
-
-
Smart, O.S.1
Akins, J.2
Blow, D.M.3
-
15
-
-
0027249189
-
Theoretical examination of the mechanism of aldose-ketose isomerization
-
Zheng, Y.J., Merz, K.M., Jr., Farber, G.K. Theoretical examination of the mechanism of aldose-ketose isomerization. Prot. Engn. 6:479-486, 1993.
-
(1993)
Prot. Engn.
, vol.6
, pp. 479-486
-
-
Zheng, Y.J.1
Merz Jr., K.M.2
Farber, G.K.3
-
16
-
-
4243855963
-
The role of electrostatics in the ring opening step of xylose isomerase catalysis
-
Fábián, P., Asbóth, B., Náray-Szabó, G. The role of electrostatics in the ring opening step of xylose isomerase catalysis. J. Mol. Struct. THEOCHEM 307:171-178, 1994.
-
(1994)
J. Mol. Struct. THEOCHEM
, vol.307
, pp. 171-178
-
-
Fábián, P.1
Asbóth, B.2
Náray-Szabó, G.3
-
17
-
-
0025116430
-
Catalytic mechanism of xylose (glucose) isomerase from Clostridium thermosulfurogenes: Characterization of a structural gene and function of active site histidine
-
Lee, C., Bagdasarian, M., Meng, M., Zeikus, J.G. Catalytic mechanism of xylose (glucose) isomerase from Clostridium thermosulfurogenes: Characterization of a structural gene and function of active site histidine. J. Biol. Chem. 265: 19082-19090, 1990.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 19082-19090
-
-
Lee, C.1
Bagdasarian, M.2
Meng, M.3
Zeikus, J.G.4
-
18
-
-
0029561175
-
Molecular modelling of xylose isomerase catalysis: The role of electrostatics and charge transfer to metals
-
Fuxreiter, M., Farkas, Ö., Náray-Szabó, G. Molecular modelling of xylose isomerase catalysis: The role of electrostatics and charge transfer to metals. Prot. Eng. 8:925-933, 1995.
-
(1995)
Prot. Eng.
, vol.8
, pp. 925-933
-
-
Fuxreiter, M.1
Farkas, Ö.2
Náray-Szabó, G.3
-
20
-
-
2642699794
-
Rapid and efficient site-specific mutagenesis without phenotypic selection
-
Kunkel, T.A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc. Natl. Acad. Sci. U.S.A. 82:488-492, 1985.
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 488-492
-
-
Kunkel, T.A.1
-
21
-
-
0342368477
-
-
Doctoral thesis. Cambridge University, England
-
Gibson, T.J. Doctoral thesis. Cambridge University, England, 1984.
-
(1984)
-
-
Gibson, T.J.1
-
22
-
-
0025879889
-
-
Loviny-Anderton, T., Shaw, P., Shin, M., Hartley, B.S. Biochem. J. D-Xylose (D-glucose) isomerase from Arthrobacter strain N.R.R.L. B3728. 277:263-271, 1991.
-
(1991)
Biochem. J. D-Xylose (D-glucose) Isomerase from Arthrobacter Strain N.R.R.L. B3728
, vol.277
, pp. 263-271
-
-
Loviny-Anderton, T.1
Shaw, P.2
Shin, M.3
Hartley, B.S.4
-
23
-
-
0021073779
-
Construction of improved M13 vectors using oligonucleotide-directed mutagenesis
-
Norrander, J., Kempe, T., Messing, J. Construction of improved M13 vectors using oligonucleotide-directed mutagenesis. Gene 26:101-106, 1983.
-
(1983)
Gene
, vol.26
, pp. 101-106
-
-
Norrander, J.1
Kempe, T.2
Messing, J.3
-
24
-
-
0004136246
-
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Sambrook, J., Fritsch, E.F., Maniatis, T. "Molecular Cloning," 2nd Ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 1989.
-
(1989)
"Molecular Cloning," 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
25
-
-
0025912071
-
D-xylose (D-glucose) isomerase from Arthrobacter strain NRRL B3728. Purification and properties
-
Smith, C.A., Rangarajan, M., Hartley, B.S. D-xylose (D-glucose) isomerase from Arthrobacter strain NRRL B3728. Purification and properties. Biochem. J. 277:255-261, 1991.
-
(1991)
Biochem. J.
, vol.277
, pp. 255-261
-
-
Smith, C.A.1
Rangarajan, M.2
Hartley, B.S.3
-
26
-
-
0026760851
-
Stability of Arthrobacter D-xylose isomerase to denaturants and heat
-
Rangarajan, M., Asbóth, B., Hartley, B.S. Stability of Arthrobacter D-xylose isomerase to denaturants and heat. Biochem. J. 285:889-898.
-
Biochem. J.
, vol.285
, pp. 889-898
-
-
Rangarajan, M.1
Asbóth, B.2
Hartley, B.S.3
-
29
-
-
84920325457
-
AMoRe: An automated package for molecular replacament
-
Navaza, J. AMoRe: An automated package for molecular replacament. Acta Crystallogr. A50:157-163, 1994.
-
(1994)
Acta Crystallogr.
, vol.A50
, pp. 157-163
-
-
Navaza, J.1
-
30
-
-
0028103275
-
The CCP4 Suite: Programs for protein crystallography
-
CCP4. The CCP4 Suite: Programs for protein crystallography. Acta Crystallogr. D50:760-763, 1994.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 760-763
-
-
-
31
-
-
0002860357
-
-
Diamond, R., Ramesseshan, S., Venkatesan, K. (eds.). Bangalore: Indian Academy of Sciences
-
Hendrickson, W.A., Konnert, J.H. In: "Computing in Crystallography." Diamond, R., Ramesseshan, S., Venkatesan, K. (eds.). Bangalore: Indian Academy of Sciences, 1980: 1301-1323.
-
(1980)
Computing in Crystallography
, pp. 1301-1323
-
-
Hendrickson, W.A.1
Konnert, J.H.2
-
32
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W., Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47:110-119, 1991.
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
33
-
-
0002638513
-
-
Allen, F.H., Bergerhoff, G., Sievers, R. (eds.). Bonn: Data Commission of the International Union of Crystallography
-
Abola, E.E., Bernstein, F.C., Bryant, S.H., Koetzle, T.F., Weng, J. In: "Crystallographic Databases - Information Content, Software Systems, Scientific Applications." Allen, F.H., Bergerhoff, G., Sievers, R. (eds.). Bonn: Data Commission of the International Union of Crystallography, 1987: 107-122.
-
(1987)
Crystallographic Databases - Information Content, Software Systems, Scientific Applications
, pp. 107-122
-
-
Abola, E.E.1
Bernstein, F.C.2
Bryant, S.H.3
Koetzle, T.F.4
Weng, J.5
-
34
-
-
84988129057
-
Optimization of parameters from semiempirical methods. I. Method
-
Stewart, J.J.P. Optimization of parameters from semiempirical methods. I. Method. J. Comput. Chem. 10:209-217, 1989.
-
(1989)
J. Comput. Chem.
, vol.10
, pp. 209-217
-
-
Stewart, J.J.P.1
-
35
-
-
0343237977
-
-
Indiana University, Bloomington, Indiana, USA
-
MOPAC Program, Version 5.5 Quantum Chemistry Program Exchange 455, Indiana University, Bloomington, Indiana, USA, 1989.
-
(1989)
MOPAC Program, Version 5.5 Quantum Chemistry Program Exchange 455
-
-
-
36
-
-
0342368473
-
-
Department of Biochemistry and Molecular Biophysics. New York: Columbia University
-
Sharp, K.A., Nicholls, A. Program DelPhi, Department of Biochemistry and Molecular Biophysics. New York: Columbia University, 1989.
-
(1989)
Program DelPhi
-
-
Sharp, K.A.1
Nicholls, A.2
-
37
-
-
0000887615
-
What factors determine cation co-ordination numbers?
-
Brown, I.D. What factors determine cation co-ordination numbers? Acta Crystallogr. 644:545-553, 1979.
-
(1979)
Acta Crystallogr.
, vol.644
, pp. 545-553
-
-
Brown, I.D.1
-
38
-
-
0022808298
-
Catalytic properties of D-xylose isomerase from Streptomyces violaceoruber
-
Callens, M., Kersters-Hilderson, H., Opstal, O.V., De Bruyne, C.K. Catalytic properties of D-xylose isomerase from Streptomyces violaceoruber. Enzyme Microb. Technol. 8:696-700, 1986.
-
(1986)
Enzyme Microb. Technol.
, vol.8
, pp. 696-700
-
-
Callens, M.1
Kersters-Hilderson, H.2
Opstal, O.V.3
De Bruyne, C.K.4
-
40
-
-
0028913979
-
Wild-type and mutant D-xylose isomerase from Actinoplanes missouriensis: Metal-ion dissociation constants, kinetic parameters of deuterated and non-deuterated substrates and solvent-isotope effects
-
Van Bastelaere, P.B.M., Kersters-Hilderson, H.L.M., Lambeir, A.M. Wild-type and mutant D-xylose isomerase from Actinoplanes missouriensis: Metal-ion dissociation constants, kinetic parameters of deuterated and non-deuterated substrates and solvent-isotope effects. Biochem. J. 307:135-142, 1995.
-
(1995)
Biochem. J.
, vol.307
, pp. 135-142
-
-
Van Bastelaere, P.B.M.1
Kersters-Hilderson, H.L.M.2
Lambeir, A.M.3
-
41
-
-
0029143705
-
Probing the roles of active site residues in D-xylose isomerase
-
Whitaker, R.D., Cho, Y., Cha, J., Carrell, H.L., Glusker, J.P., Karplus, P.A., Batt, C.A. Probing the roles of active site residues in D-xylose isomerase. J. Biol. Chem. 270: 22895-22906, 1995.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 22895-22906
-
-
Whitaker, R.D.1
Cho, Y.2
Cha, J.3
Carrell, H.L.4
Glusker, J.P.5
Karplus, P.A.6
Batt, C.A.7
-
43
-
-
0010717831
-
-
TRIPOS Associates, St. Louis, MO
-
SYBYL Program Version 6.0a (1993) TRIPOS Associates, St. Louis, MO.
-
(1993)
SYBYL Program Version 6.0a
-
-
|