-
1
-
-
78650885619
-
Engineered photoreceptors as novel optogenetic tools
-
Möglich A, Moffat K (2010) Engineered photoreceptors as novel optogenetic tools. Photochem Photobiol Sci 9(10):1286-1300.
-
(2010)
Photochem Photobiol Sci
, vol.9
, Issue.10
, pp. 1286-1300
-
-
Möglich A, M.1
-
2
-
-
65649113981
-
Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome
-
Shu X, et al. (2009) Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome. Science 324(5928):804-807.
-
(2009)
Science
, vol.324
, Issue.5928
, pp. 804-807
-
-
Shu, X.1
-
3
-
-
80053896548
-
Phytochrome structure and photochemistry: Recent advances toward a complete molecular picture
-
Ulijasz AT, Vierstra RD (2011) Phytochrome structure and photochemistry: Recent advances toward a complete molecular picture. Curr Opin Plant Biol 14(5):498-506.
-
(2011)
Curr Opin Plant Biol
, vol.14
, Issue.5
, pp. 498-506
-
-
Ulijasz, A.T.1
Vierstra, R.D.2
-
4
-
-
72049106410
-
Phytochrome functions in Arabidopsis development
-
Franklin KA, Quail PH (2010) Phytochrome functions in Arabidopsis development. J Exp Bot 61(1):11-24.
-
(2010)
J Exp Bot
, vol.61
, Issue.1
, pp. 11-24
-
-
Franklin, K.A.1
Quail, P.H.2
-
5
-
-
78951495450
-
Bacterial phytochromes: More than meets the light
-
Auldridge ME, Forest KT (2011) Bacterial phytochromes: More than meets the light. Crit Rev Biochem Mol Biol 46(1):67-88.
-
(2011)
Crit Rev Biochem Mol Biol
, vol.46
, Issue.1
, pp. 67-88
-
-
Auldridge, M.E.1
Forest, K.T.2
-
6
-
-
0242405551
-
The structural basis of light-harvesting in purple bacteria
-
Cogdell RJ, et al. (2003) The structural basis of light-harvesting in purple bacteria. FEBS Lett 555(1):35-39.
-
(2003)
FEBS Lett
, vol.555
, Issue.1
, pp. 35-39
-
-
Cogdell, R.J.1
-
7
-
-
25444438210
-
A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomonas palustris
-
Giraud E, et al. (2005) A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomonas palustris. J Biol Chem 280(37):32389-32397.
-
(2005)
J Biol Chem
, vol.280
, Issue.37
, pp. 32389-32397
-
-
Giraud, E.1
-
8
-
-
78149408524
-
Bacteriophytochrome-dependent regulation of lightharvesting complexes in Rhodopseudomonas palustris anaerobic cultures
-
Li M, Noll S, Beatty JT (2010) Bacteriophytochrome-dependent regulation of lightharvesting complexes in Rhodopseudomonas palustris anaerobic cultures. Curr Microbiol 61(5):429-434.
-
(2010)
Curr Microbiol
, vol.61
, Issue.5
, pp. 429-434
-
-
Li, M.1
Noll, S.2
Beatty, J.T.3
-
9
-
-
34547628072
-
Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion
-
Yang X, Stojkovic EA, Kuk J, Moffat K (2007) Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion. Proc Natl Acad Sci USA 104(30):12571-12576.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.30
, pp. 12571-12576
-
-
Yang, X.1
Stojkovic, E.A.2
Kuk, J.3
Moffat, K.4
-
10
-
-
79960748936
-
Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs
-
Toh KC, Stojkovic EA, van Stokkum IH, Moffat K, Kennis JT (2011) Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs. Phys Chem Chem Phys 13(25):11985-11997.
-
(2011)
Phys Chem Chem Phys
, vol.13
, Issue.25
, pp. 11985-11997
-
-
Toh, K.C.1
Stojkovic, E.A.2
Van Stokkum, I.H.3
Moffat, K.4
Kennis, J.T.5
-
11
-
-
77952688009
-
Proton-transfer and hydrogen-bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome
-
Toh KC, Stojkovic EA, van Stokkum IH, Moffat K, Kennis JT (2010) Proton-transfer and hydrogen-bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome. Proc Natl Acad Sci USA 107(20): 9170-9175.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.20
, pp. 9170-9175
-
-
Toh, K.C.1
Stojkovic, E.A.2
Van Stokkum, I.H.3
Moffat, K.4
Kennis, J.T.5
-
12
-
-
79955392478
-
Primary reactions of bacteriophytochrome observed with ultrafast mid-infrared spectroscopy
-
Toh KC, et al. (2011) Primary reactions of bacteriophytochrome observed with ultrafast mid-infrared spectroscopy. J Phys Chem A 115(16):3778-3786.
-
(2011)
J Phys Chem A
, vol.115
, Issue.16
, pp. 3778-3786
-
-
Toh, K.C.1
-
13
-
-
0035856979
-
Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore
-
Bhoo SH, Davis SJ, Walker J, Karniol B, Vierstra RD (2001) Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore. Nature 414(6865):776-779.
-
(2001)
Nature
, vol.414
, Issue.6865
, pp. 776-779
-
-
Bhoo, S.H.1
Davis, S.J.2
Walker, J.3
Karniol, B.4
Vierstra, R.D.5
-
14
-
-
1642276701
-
The biliverdin chromophore binds covalently to a conserved cysteine residue in the N-terminus of Agrobacterium phytochrome Agp1
-
Lamparter T, et al. (2004) The biliverdin chromophore binds covalently to a conserved cysteine residue in the N-terminus of Agrobacterium phytochrome Agp1. Biochemistry 43(12):3659-3669.
-
(2004)
Biochemistry
, vol.43
, Issue.12
, pp. 3659-3669
-
-
Lamparter, T.1
-
15
-
-
53849142165
-
Function and distribution of bilin biosynthesis enzymes in photosynthetic organisms
-
Dammeyer T, Frankenberg-Dinkel N (2008) Function and distribution of bilin biosynthesis enzymes in photosynthetic organisms. Photochem Photobiol Sci 7(10):1121-1130.
-
(2008)
Photochem Photobiol Sci
, vol.7
, Issue.10
, pp. 1121-1130
-
-
Dammeyer, T.1
Frankenberg-Dinkel, N.2
-
16
-
-
23944495805
-
A bacteriophytochrome regulates the synthesis of LH4 complexes in Rhodopseudomonas palustris
-
Evans K, et al. (2005) A bacteriophytochrome regulates the synthesis of LH4 complexes in Rhodopseudomonas palustris. Photosynth Res 85(2):169-180.
-
(2005)
Photosynth Res
, vol.85
, Issue.2
, pp. 169-180
-
-
Evans, K.1
-
17
-
-
84870531300
-
Red/green cyanobacteriochromes: Sensors of color and power
-
Rockwell NC, Martin SS, Lagarias JC (2012) Red/green cyanobacteriochromes: Sensors of color and power. Biochemistry 51(48):9667-9677.
-
(2012)
Biochemistry
, vol.51
, Issue.48
, pp. 9667-9677
-
-
Rockwell, N.C.1
Martin, S.S.2
Lagarias, J.C.3
-
19
-
-
0036007349
-
The 7.5-A electron density and spectroscopic properties of a novel low-light B800 LH2 from Rhodopseudomonas palustris
-
Hartigan N, Tharia HA, Sweeney F, Lawless AM, Papiz MZ (2002) The 7.5-A electron density and spectroscopic properties of a novel low-light B800 LH2 from Rhodopseudomonas palustris. Biophys J 82(2):963-977.
-
(2002)
Biophys J
, vol.82
, Issue.2
, pp. 963-977
-
-
Hartigan, N.1
Tharia, H.A.2
Sweeney, F.3
Lawless, A.M.4
Papiz, M.Z.5
-
20
-
-
48349141422
-
Bacteriophytochromes in anoxygenic photosynthetic bacteria
-
Giraud E, Verméglio A (2008) Bacteriophytochromes in anoxygenic photosynthetic bacteria. Photosynth Res 97(2):141-153.
-
(2008)
Photosynth Res
, vol.97
, Issue.2
, pp. 141-153
-
-
Giraud, E.1
Verméglio, A.2
-
21
-
-
45549107695
-
Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes
-
Wagner JR, et al. (2008) Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes. J Biol Chem 283(18):12212-12226.
-
(2008)
J Biol Chem
, vol.283
, Issue.18
, pp. 12212-12226
-
-
Wagner, J.R.1
-
22
-
-
0037015009
-
Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment site
-
Lamparter T, Michael N, Mittmann F, Esteban B (2002) Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment site. Proc Natl Acad Sci USA 99(18):11628-11633.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.18
, pp. 11628-11633
-
-
Lamparter, T.1
Michael, N.2
Mittmann, F.3
Esteban, B.4
-
23
-
-
0036583227
-
Phytochromes with noncovalently bound chromophores: The ability of apophytochromes to direct tetrapyrrole photoisomerization
-
Jorissen HJ, Quest B, Lindner I, Tandeau de Marsac N, GärtnerW (2002) Phytochromes with noncovalently bound chromophores: The ability of apophytochromes to direct tetrapyrrole photoisomerization. Photochem Photobiol 75(5):554-559.
-
(2002)
Photochem Photobiol
, vol.75
, Issue.5
, pp. 554-559
-
-
Jorissen Hj, Q.1
-
24
-
-
84864876501
-
Dimerization properties of the RpBphP2 chromophorebinding domain crystallized by homologue-directed mutagenesis
-
Bellini D, Papiz MZ (2012) Dimerization properties of the RpBphP2 chromophorebinding domain crystallized by homologue-directed mutagenesis. Acta Crystallogr D Biol Crystallogr 68(Pt 8):1058-1066.
-
(2012)
Acta Crystallogr D Biol Crystallogr
, vol.68
, Issue.PART 8
, pp. 1058-1066
-
-
Bellini, D.1
Papiz, M.Z.2
-
25
-
-
84864860526
-
Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor
-
Bellini D, Papiz MZ (2012) Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor. Structure 20(8):1436-1446.
-
(2012)
Structure
, vol.20
, Issue.8
, pp. 1436-1446
-
-
Bellini, D.1
Papiz, M.Z.2
-
26
-
-
33845239413
-
Rhodopseudomonas palustris CGA009 has two functional ppsR genes, each of which encodes a repressor of photosynthesis gene expression
-
Braatsch S, et al. (2006) Rhodopseudomonas palustris CGA009 has two functional ppsR genes, each of which encodes a repressor of photosynthesis gene expression. Biochemistry 45(48):14441-14451.
-
(2006)
Biochemistry
, vol.45
, Issue.48
, pp. 14441-14451
-
-
Braatsch, S.1
-
27
-
-
3242748298
-
Bacteriophytochrome and regulation of the synthesis of the photosynthetic apparatus in Rhodopseudomonas palustris: Pitfalls of using laboratory strains
-
Giraud E, et al. (2004) Bacteriophytochrome and regulation of the synthesis of the photosynthetic apparatus in Rhodopseudomonas palustris: Pitfalls of using laboratory strains. Photochem Photobiol Sci 3(6):587-591.
-
(2004)
Photochem Photobiol Sci
, vol.3
, Issue.6
, pp. 587-591
-
-
Giraud, E.1
-
28
-
-
34250630996
-
The O2-responsive repressor PpsR2 but not PpsR1 transduces a light signal sensed by the BphP1 phytochrome in Rhodopseudomonas palustris CGA009
-
Braatsch S, Johnson JA, Noll K, Beatty JT (2007) The O2-responsive repressor PpsR2 but not PpsR1 transduces a light signal sensed by the BphP1 phytochrome in Rhodopseudomonas palustris CGA009. FEMS Microbiol Lett 272(1):60-64.
-
(2007)
FEMS Microbiol Lett
, vol.272
, Issue.1
, pp. 60-64
-
-
Braatsch, S.1
Johnson, J.A.2
Noll, K.3
Beatty, J.T.4
-
29
-
-
76449108491
-
FixK, a global regulator of microaerobic growth, controls photosynthesis in Rhodopseudomonas palustris
-
Rey FE, Harwood CS (2010) FixK, a global regulator of microaerobic growth, controls photosynthesis in Rhodopseudomonas palustris. Mol Microbiol 75(4):1007-1020.
-
(2010)
Mol Microbiol
, vol.75
, Issue.4
, pp. 1007-1020
-
-
Rey, F.E.1
Harwood, C.S.2
-
30
-
-
5444249703
-
Characterization of a heme oxygenase of Clostridium tetani and its possible role in oxygen tolerance
-
Brüggemann H, Bauer R, Raffestin S, Gottschalk G (2004) Characterization of a heme oxygenase of Clostridium tetani and its possible role in oxygen tolerance. Arch Microbiol 182(2-3):259-263.
-
(2004)
Arch Microbiol
, vol.182
, Issue.2-3
, pp. 259-263
-
-
Brüggemann, H.1
Bauer, R.2
Raffestin, S.3
Gottschalk, G.4
-
31
-
-
77949297055
-
Transcriptional regulation of hemO encoding heme oxygenase in Clostridium perfringens
-
Hassan S, et al. (2010) Transcriptional regulation of hemO encoding heme oxygenase in Clostridium perfringens. J Microbiol 48(1):96-101.
-
(2010)
J Microbiol
, vol.48
, Issue.1
, pp. 96-101
-
-
Hassan, S.1
-
32
-
-
2442645409
-
Crystal structure of the dioxygen-bound heme oxygenase from Corynebacterium diphtheriae: Implications for heme oxygenase function
-
Unno MM, et al. (2004) Crystal structure of the dioxygen-bound heme oxygenase from Corynebacterium diphtheriae: Implications for heme oxygenase function. J Biol Chem 279(20):21055-21061.
-
(2004)
J Biol Chem
, vol.279
, Issue.20
, pp. 21055-21061
-
-
Unno, M.M.1
-
33
-
-
32344441400
-
Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states
-
VerBerkmoes NC, et al. (2006) Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states. J Proteome Res 5(2):287-298.
-
(2006)
J Proteome Res
, vol.5
, Issue.2
, pp. 287-298
-
-
Verberkmoes, N.C.1
-
34
-
-
0033993308
-
Phytochromes, cryptochromes, phototropin: Photoreceptor interactions in plants
-
Casal JJ (2000) Phytochromes, cryptochromes, phototropin: Photoreceptor interactions in plants. Photochem Photobiol 71(1):1-11.
-
(2000)
Photochem Photobiol
, vol.71
, Issue.1
, pp. 1-11
-
-
Casal, J.J.1
-
35
-
-
33646594462
-
Identification of a ubiquinone-binding site that affects autophosphorylation of the sensor kinase RegB
-
Swem LR, Gong X, Yu C-A, Bauer CE (2006) Identification of a ubiquinone-binding site that affects autophosphorylation of the sensor kinase RegB. J Biol Chem 281(10):6768-6775.
-
(2006)
J Biol Chem
, vol.281
, Issue.10
, pp. 6768-6775
-
-
Swem, L.R.1
Gong, X.2
Yu, C.-A.3
Bauer, C.E.4
-
36
-
-
79952180898
-
RegB kinase activity is controlled in part by monitoring the ratio of oxidized to reduced ubiquinones in the ubiquinone pool
-
Wu J, Bauer CE (2010) RegB kinase activity is controlled in part by monitoring the ratio of oxidized to reduced ubiquinones in the ubiquinone pool. MBio 1(5):e00272-10.
-
(2010)
MBio
, vol.1
, Issue.5
-
-
Wu, J.1
Bauer, C.E.2
-
37
-
-
77957187746
-
Light-induced reactions of ubiquinone in photosynthetic bacterium, Chromatium D, II: Effects of inhibitors and other experimental conditions
-
Takamiya K, Takamiya A (1969) Light-induced reactions of ubiquinone in photosynthetic bacterium, Chromatium D, II: Effects of inhibitors and other experimental conditions. Plant Cell Physiol 10:113-127.
-
(1969)
Plant Cell Physiol
, vol.10
, pp. 113-127
-
-
Takamiya, K.1
Takamiya, A.2
-
38
-
-
0029200332
-
Redox regulation of light-harvesting complex II and cab mRNA abundance in Dunaliella salina
-
Maxwell DP, Laudenbach DE, Huner N (1995) Redox regulation of light-harvesting complex II and cab mRNA abundance in Dunaliella salina. Plant Physiol 109(3):787-795.
-
(1995)
Plant Physiol
, vol.109
, Issue.3
, pp. 787-795
-
-
Maxwell, D.P.1
De, L.2
Huner, N.3
-
39
-
-
0028865421
-
Light intensity regulation of cab gene transcription is signaled by the redox state of the plastoquinone pool
-
Escoubas JM, Lomas M, LaRoche J, Falkowski PG (1995) Light intensity regulation of cab gene transcription is signaled by the redox state of the plastoquinone pool. Proc Natl Acad Sci USA 92(22):10237-10241.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, Issue.22
, pp. 10237-10241
-
-
Escoubas, J.M.1
Lomas, M.2
Laroche, J.3
Falkowski, P.G.4
-
40
-
-
33751214536
-
Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock
-
Ivleva NB, Gao T, LiWang AC, Golden SS (2006) Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock. Proc Natl Acad Sci USA 103(46):17468-17473.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.46
, pp. 17468-17473
-
-
Ivleva, N.B.1
Gao, T.2
Liwang, A.C.3
Golden, S.S.4
-
41
-
-
34547181229
-
Evolution of a bacteriophytochrome from light to redox sensor
-
Vuillet L, et al. (2007) Evolution of a bacteriophytochrome from light to redox sensor. EMBO J 26(14):3322-3331.
-
(2007)
EMBO J
, vol.26
, Issue.14
, pp. 3322-3331
-
-
Vuillet, L.1
-
42
-
-
0032990441
-
PAS domains: Internal sensors of oxygen, redox potential, and light
-
Taylor BL, Zhulin IB (1999) PAS domains: Internal sensors of oxygen, redox potential, and light. Microbiol Mol Biol Rev 63(2):479-506.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, Issue.2
, pp. 479-506
-
-
Taylor, B.L.1
Zhulin, I.B.2
-
43
-
-
0025812763
-
Regulation of benzoate-CoA ligase in Rhodopseudomonas palustris
-
Kim M-K, Harwood CS (2006) Regulation of benzoate-CoA ligase in Rhodopseudomonas palustris. FEMS Microbiol Lett 83:199-203.
-
(2006)
FEMS Microbiol Lett
, vol.83
, pp. 199-203
-
-
Kim, M.-K.1
Harwood, C.S.2
-
44
-
-
0021027842
-
A broad host range mobilization system for in vivo genetic engineering: Transposon mutagenesis in gram-negative bacteria
-
Simon R, Priefer U, Pühler A (1983) A broad host range mobilization system for in vivo genetic engineering: Transposon mutagenesis in gram-negative bacteria. Nat Biotechnol 1:784-791.
-
(1983)
Nat Biotechnol
, vol.1
, pp. 784-791
-
-
Simon, R.1
Priefer, U.2
Pühler, A.3
-
45
-
-
0027158657
-
Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria
-
Quandt J, Hynes MF (1993) Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria. Gene 127(1):15-21.
-
(1993)
Gene
, vol.127
, Issue.1
, pp. 15-21
-
-
Quandt, J.1
Hynes, M.F.2
-
46
-
-
33947219284
-
Redirection of metabolism for biological hydrogen production
-
Rey FE, Heiniger EK, Harwood CS (2007) Redirection of metabolism for biological hydrogen production. Appl Environ Microbiol 73(5):1665-1671.
-
(2007)
Appl Environ Microbiol
, vol.73
, Issue.5
, pp. 1665-1671
-
-
Rey, F.E.1
Heiniger, E.K.2
Harwood, C.S.3
-
47
-
-
77955388615
-
Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria
-
McKinlay JB, Harwood CS 2010 Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria Proc Natl Acad Sci USA 107 26 11669-11675
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.26
, pp. 11669-11675
-
-
McKinlay, J.B.1
Harwood, C.S.2
-
48
-
-
0022486877
-
Visualization of bilin-linked peptides and proteins in polyacrylamide gels
-
Berkelman TR, Lagarias JC (1986) Visualization of bilin-linked peptides and proteins in polyacrylamide gels. Anal Biochem 156(1):194-201.
-
(1986)
Anal Biochem
, vol.156
, Issue.1
, pp. 194-201
-
-
Berkelman, T.R.1
Lagarias, J.C.2
-
49
-
-
57449104373
-
Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments
-
Oda Y, et al. (2008) Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. Proc Natl Acad Sci USA 105(47): 18543-18548.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.47
, pp. 18543-18548
-
-
Oda, Y.1
|