Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes

Journal of Biological Chemistry

Volumn 283, Issue 18, 2008, Pages 12212-12226

  Wagner, Jeremiah R ^a,c   Zhang, Junrui ^a   Von Stetten, David ^b   Günther, Mina ^b   Murgida, Daniel H ^b   Mroginski, Maria Andrea ^b   Walker, Joseph M ^a   Forest, Katrina T ^a   Hildebrandt, Peter ^b   Vierstra, Richard D ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

^c BELOIT COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINATION; AMINES; AMINO ACIDS; BINDING SITES; HYDROGEN; HYDROGEN BONDS; MILITARY CONSTRUCTION EQUIPMENT; NITROGEN COMPOUNDS; ORGANIC ACIDS; PROTONS;

BACTERIOPHYTOCHROME; BILIN CHROMOPHORES; BINDING DOMAINS; BINDING POCKETS; DEINOCOCCUS RADIODURANS; HIGHLY SENSITIVES; IN PLANTS; LIGHT SWITCHES; MUTATIONAL ANALYSIS; PHOTOCHROMICITY; PHOTOCYCLE; PROTON EXCHANGES; PYRROLE RINGS; RED LIGHTS; RESONANCE RAMAN SPECTROSCOPIES; SINGLE MUTATIONS; SPECTROSCOPIC METHODS;

CHROMOPHORES;

BACTERIOPHYTOCHROME; BILIVERDIN; PHYTOCHROME; UNCLASSIFIED DRUG; AMINO ACID; MUTANT PROTEIN; PROTON; PYRROLE DERIVATIVE;

AMINO ACID SUBSTITUTION; ARTICLE; CHROMATOPHORE; CONTROLLED STUDY; CRYSTAL STRUCTURE; DEINOCOCCUS RADIODURANS; ELECTRICITY; HYDROGEN BOND; HYDROPHOBICITY; MUTATIONAL ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTON TRANSPORT; RAMAN SPECTROMETRY; SITE DIRECTED MUTAGENESIS; BINDING SITE; CHEMISTRY; DEINOCOCCUS; FLUORESCENCE; GENETICS; METABOLISM; MUTATION; NUCLEOTIDE SEQUENCE; PROTEIN CONFORMATION;

DEINOCOCCUS RADIODURANS;

AMINO ACID SUBSTITUTION; AMINO ACIDS; BILIVERDINE; BINDING SITES; CONSERVED SEQUENCE; DEINOCOCCUS; DNA MUTATIONAL ANALYSIS; FLUORESCENCE; HYDROPHOBICITY; MUTANT PROTEINS; MUTATION; PHYTOCHROME; PROTEIN CONFORMATION; PROTONS; PYRROLES; SPECTRUM ANALYSIS, RAMAN;

EID: 45549107695     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M709355200     Document Type: Article

References (40)

1. Rockwell, N. C., Su, Y. S., and Lagarias, J. C. (2006) Annu. Rev. Plant Biol. 57, 837-858
2. Vierstra, R. D., and Karniol, B. (2005) in Handbook of Photosensory Receptors (Briggs, W. R., and Spudich, J. L., eds) pp. 171-196, Wiley-VCH Press, Weinheim, Germany
3. Quail, P. H. (2002) Nat. Rev. Mol. Cell Biol. 3, 85-93
4. Yeh, K. C., and Lagarias, J. C. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 13976-13981
5. Karniol, B., Wagner, J. R., Walker, J. M., and Vierstra, R. D. (2005) Biochem. J. 392, 103-116
6. Bhoo, S. H., Davis, S. J., Walker, J., Karniol, B., and Vierstra, R. D. (2001) Nature 414, 776-779
7. Froehlich, A. C., Noh, B., Vierstra, R. D., Loros, J., and Dunlap, J. C. (2005) Eukaryot. Cell 4, 2140-2152
8. Wagner, J. R., Zhang, J., Brunzelle, J. S., Vierstra, R. D., and Forest, K. T. (2007) J. Biol. Chem. 282, 12298-12309
9. Lamparter, T., Carrascal, M., Michael, N., Martinez, E., Rottwinkel, G., and Abian, J. (2004) Biochemistry 43, 3659-3669
10. Lagarias, J. C., and Rapoport, H. (1980) J. Amer. Chem. Soc. 102, 4821-4828
11. Wagner, J. R., Brunzelle, J. S., Forest, K. T., and Vierstra, R. D. (2005) Nature 438, 325-331
12. Kneip, C., Hildebrandt, P., Schlamann, W., Braslavsky, S. E., Mark, F., and Schaffner, K. (1999) Biochemistry 38, 15185-15192
13. von Stetten, D., Seibeck, S., Michael, N., Scheerer, P., Mroginski, M. A., Murgida, D. H., Krauss, N., Heyn, M. P., Hildebrandt, P., Borucki, B., and Lamparter, T. (2007) J. Biol. Chem. 282, 2116-2123
14. Andel, F., Hasson, K. C., Gai, F., Anfinrud, P. A., and Mathies, R. A. (1997) Biospect. 3, 421-433
15. Bischoff, M., Hermann, G., Rentsch, S., and Strehlow, D. (2001) Biochemistry 40, 181-186
16. Andel, F., 3rd, Lagarias, J. C., and Mathies, R. A. (1996) Biochemistry 35, 15997-16008
17. Mizutani, Y., Tokutomi, S., and Kitagawa, T. (1994) Biochemistry 33, 153-158
18. Rudiger, W., Thummler, F., Cmiel, E., and Schneider, S. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 6244-6248
19. Tu, S.-L., and Lagarias, J. C. (2005) in Handbook of Photosensory Receptors (Briggs, W. R., and Spudich, J. L., eds) pp. 121-149, Wiley-VCH Press, Weinheim, Germany
20. Foerstendorf, H., Benda, C., Gartner, W., Storf, M., Scheer, H., and Siebert, F. (2001) Biochemistry 40, 14952-14959
21. Braslavsky, S. E. (2003) in Photochromisms, Molecules and Systems (BrouasLaurent, D. H., and BrouasLaurent, H., eds) pp. 738 -755, Elsevier Science BV, Amsterdam
22. Borucki, B., von Stetten, D., Seibeck, S., Lamparter, T., Michael, N., Mroginski, M. A., Otto, H., Murgida, D. H., Heyn, M. P., and Hildebrandt, P. (2005) J. Biol. Chem. 280, 34358-34364
23. Andel, F., 3rd, Murphy, J. T., Haas, J. A., McDowell, M. T., van der Hoef, I., Lugtenburg, J., Lagarias, J. C., and Mathies, R. A. (2000) Biochemistry 39, 2667-2676
24. Mroginski, M. A., Murgida, D. H., von Stetten, D., Kneip, C., Mark, F., and Hildebrandt, P. (2004) J. Am. Chem. Soc. 126, 16734-16735
25. Kneip, C., Schlamann, W., Braslavsky, S. E., Hildebrandt, P., and Schaffner, K. (2000) FEBS Lett. 482, 252-256
26. Yang, X., Stojkovic, E. M., Kuk, J., and Moffat, K. (2007) Proc. Natl. Acad. Sci. U. S. A. 104, 12571-12576
27. Davis, S. J., Vener, A. V., and Vierstra, R. D. (1999) Science 286, 2517-2520
28. Cherry, J. R., Hondred, D., Walker, J. M., Keller, J. M., Hershey, H. P., and Vierstra, R. D. (1993) Plant Cell 5, 565-575
29. Bhoo, S. H., Hirano, T., Jeong, H.-Y., Lee, J.-G., Furuya, M., and Song, P.-S. (1997) J. Am. Chem. Soc. 48, 11717-11718
30. Fischer, A. J., and Lagarias, J. C. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 17334-17339
31. Hahn, J., Strauss, H. M., Landgraf, F. T., Gimenez, H. F., Lochnit, G., Schmieder, P., and Hughes, J. (2006) FEBS J. 273, 1415-1429
32. Stockhaus, J., Nagatani, A., Halfter, U., Kay, S., Furuya, M., and Chua, N. H. (1992) Genes Dev. 6, 2364-2372
33. Zhao, K. H., Ran, Y., Li, M., Sun, Y. N., Zhou, M., Storf, M., Kupka, M., Bohm, S., Bubenzer, C., and Scheer, H. (2004) Biochemistry 43, 11576-11588
34. Stevens, J. M., Daltrop, O., Allen, J. W., and Ferguson, S. J. (2004) Acc. Chem. Res. 37, 999-1007
35. Lamparter, T., Esteban, B., and Hughes, J. (2001) Eur. J. Biochem. 268, 4720-4730
36. Hanzawa, H., Inomata, K., Kinoshita, H., Kakiuchi, T., Jayasundera, K. P., Sawamoto, D., Ohta, A., Uchida, K., Wada, K., and Furuya, M. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 3612-3617
37. Fischer, A. J., Rockwell, N. C., Jang, A. Y., Ernst, L. A., Waggoner, A. S., Duan, Y., Lei, H., and Lagarias, J. C. (2005) Biochemistry 44, 15203-15215
38. Mroginski, M. A., Murgida, D. H., and Hildebrandt, P. (2007) Acc. Chem. Res. 40, 258-266
39. Inomata, K., Noack, S., Hammam, M. A., Khawn, H., Kinoshita, H., Murata, Y., Michael, N., Scheerer, P., Krauss, N., and Lamparter, T. (2006) J. Biol. Chem. 281, 28162-28173
40. Borucki, B., Otto, H., Rottwinkel, G., Hughes, J., Heyn, M. P., and Lamparter, T. (2003) Biochemistry 42, 13684-13697