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Volumn 107, Issue 20, 2010, Pages 9170-9175

Proton-transfer and hydrogen-bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome

Author keywords

Biophotonics; Hydrogen bonds; Kinetic isotope effect; Near IR fluorescent protein; Reaction mechanism

Indexed keywords

BACTERIOPHYTOCHROME; BILIVERDIN; PHYTOCHROME; UNCLASSIFIED DRUG;

EID: 77952688009     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0911535107     Document Type: Article
Times cited : (130)

References (35)
  • 3
    • 27844461604 scopus 로고    scopus 로고
    • A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome
    • Wagner JR, Brunzelle JS, Forest KT, Vierstra RD (2005) A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome. Nature 438:325-331.
    • (2005) Nature , vol.438 , pp. 325-331
    • Wagner, J.R.1    Brunzelle, J.S.2    Forest, K.T.3    Vierstra, R.D.4
  • 4
    • 34249728355 scopus 로고    scopus 로고
    • High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution
    • Wagner JR, et al. (2007) High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution. J Biol Chem 282:12298-12309.
    • (2007) J Biol Chem , vol.282 , pp. 12298-12309
    • Wagner, J.R.1
  • 5
    • 34547628072 scopus 로고    scopus 로고
    • Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion
    • DOI 10.1073/pnas.0701737104
    • Yang X, Stojkovic EA, Kuk J, Moffat K (2007) Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion. Proc Natl Acad Sci USA 104:12571-12576. (Pubitemid 47206179)
    • (2007) Proceedings of the National Academy of Sciences of the United States of America , vol.104 , Issue.30 , pp. 12571-12576
    • Yang, X.1    Stojkovic, E.A.2    Kuk, J.3    Moffat, K.4
  • 6
    • 55749108880 scopus 로고    scopus 로고
    • Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction
    • Yang X, Kuk J, Moffat K (2008) Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and signal transduction. Proc Natl Acad Sci USA 105:14715-14720.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14715-14720
    • Yang, X.1    Kuk, J.2    Moffat, K.3
  • 7
    • 55749108535 scopus 로고    scopus 로고
    • The structure of a complete phytochrome sensory module in the Pr ground state
    • Essen LO, Mailliet J, Hughes J (2008) The structure of a complete phytochrome sensory module in the Pr ground state. Proc Natl Acad Sci USA 105:14709-14714.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14709-14714
    • Essen, L.O.1    Mailliet, J.2    Hughes, J.3
  • 8
    • 0000588014 scopus 로고    scopus 로고
    • Femtosecond time-resolved spectroscopy of the primary photochemistry of phytochrome
    • Andel F., III, et al. (1997) Femtosecond time-resolved spectroscopy of the primary photochemistry of phytochrome. Biospectroscopy 3:421-433. (Pubitemid 127778501)
    • (1997) Biospectroscopy , vol.3 , Issue.6 , pp. 421-433
    • Andel III, F.1    Hasson, K.C.2    Gai, F.3    Anfinrud, P.A.4    Mathies, R.A.5
  • 9
    • 0036154249 scopus 로고    scopus 로고
    • Ultrafast dynamics of phytochrome from the cyanobacterium Synechocystis, reconstituted with phycocyanobilin and phycoerythrobilin
    • Heyne K, et al. (2002) Ultrafast dynamics of phytochrome from the cyanobacterium synechocystis, reconstituted with phycocyanobilin and phycoerythrobilin. Biophys J 82:1004-1016. (Pubitemid 34111238)
    • (2002) Biophysical Journal , vol.82 , Issue.2 , pp. 1004-1016
    • Heyne, K.1    Herbst, J.2    Stehlik, D.3    Esteban, B.4    Lamparter, T.5    Hughes, J.6    Diller, R.7
  • 10
    • 33846105959 scopus 로고    scopus 로고
    • Formation of the early photoproduct lumi-R of cyanobacterial phytochrome cph1 observed by ultrafast mid-infrared spectroscopy
    • van Thor JJ, Ronayne KL, TowrieM(2007) Formation of the early photoproduct lumi-R of cyanobacterial phytochrome cph1 observed by ultrafast mid-infrared spectroscopy. J Am Chem Soc 129:126-132.
    • (2007) J Am Chem Soc , vol.129 , pp. 126-132
    • Van Thor, J.J.1    Ronayne, K.L.2    Towrie, M.3
  • 11
    • 60549088102 scopus 로고    scopus 로고
    • Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy
    • Dasgupta J, et al. (2009) Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy. Proc Natl Acad Sci USA 106:1784-1789.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 1784-1789
    • Dasgupta, J.1
  • 12
    • 34547765404 scopus 로고    scopus 로고
    • Sub-picosecond mid-infrared spectroscopy of phytochrome Agp1 from Agrobacterium tumefaciens
    • Schumann C, et al. (2007) Sub-picosecond mid-infrared spectroscopy of phytochrome Agp1 from Agrobacterium tumefaciens. ChemPhysChem 8:1657-1663.
    • (2007) ChemPhysChem , vol.8 , pp. 1657-1663
    • Schumann, C.1
  • 13
    • 65649113981 scopus 로고    scopus 로고
    • Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome
    • Shu XK, et al. (2009) Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome. Science 324:804-807.
    • (2009) Science , vol.324 , pp. 804-807
    • Shu, X.K.1
  • 14
    • 10644265997 scopus 로고    scopus 로고
    • Harnessing phytochrome's glowing potential
    • Fischer AJ, Lagarias JC (2004) Harnessing phytochrome's glowing potential. Proc Natl Acad Sci USA 101:17334-17339.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17334-17339
    • Fischer, A.J.1    Lagarias, J.C.2
  • 15
    • 45549107695 scopus 로고    scopus 로고
    • Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes
    • Wagner JR, et al. (2008) Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes. J Biol Chem 283:12212-12226.
    • (2008) J Biol Chem , vol.283 , pp. 12212-12226
    • Wagner, J.R.1
  • 17
    • 0001230325 scopus 로고    scopus 로고
    • Primary quantum yield and volume change of phytochrome-A phototransformation determined by laser-induced optoacoustic spectroscopy
    • Gensch T, Churio MS, Braslavsky SE, Schaffner K (1996) Primary quantum yield and volume change of phytochrome-A phototransformation determined by laser-induced optoacoustic spectroscopy. Photochem Photobiol 63:719-725. (Pubitemid 126467630)
    • (1996) Photochemistry and Photobiology , vol.63 , Issue.6 , pp. 719-725
    • Gensch, T.1    Churio, M.S.2    Braslavsky, S.E.3    Schaffner, K.4
  • 19
    • 44849105177 scopus 로고    scopus 로고
    • Femtosecond kinetics of photoconversion of the higher plant photoreceptor phytochrome carrying native and modified chromophores
    • Muller MG, et al. (2008) Femtosecond kinetics of photoconversion of the higher plant photoreceptor phytochrome carrying native and modified chromophores. Biophys J 94:4370-4382.
    • (2008) Biophys J , vol.94 , pp. 4370-4382
    • Muller, M.G.1
  • 20
    • 48849085995 scopus 로고    scopus 로고
    • Chromophore heterogeneity and photoconversion in phytochrome crystals and solution studied by resonance Raman spectroscopy
    • von Stetten D, et al. (2008) Chromophore heterogeneity and photoconversion in phytochrome crystals and solution studied by resonance Raman spectroscopy. Angew Chem Int Ed Engl 47:4753-4755.
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 4753-4755
    • Von Stetten, D.1
  • 21
    • 70349611527 scopus 로고    scopus 로고
    • Homogeneity of phytochrome Cph1 vibronic absorption revealed by resonance Raman intensity analysis
    • Spillane KM, Dasgupta J, Lagarias JC, Mathies RA (2009) Homogeneity of phytochrome Cph1 vibronic absorption revealed by resonance Raman intensity analysis. J Am Chem Soc 131:13946-13948.
    • (2009) J Am Chem Soc , vol.131 , pp. 13946-13948
    • Spillane, K.M.1    Dasgupta, J.2    Lagarias, J.C.3    Mathies, R.A.4
  • 22
    • 0001096476 scopus 로고
    • 2O solutions
    • 2O solutions. Biochemistry 26:1412-1420.
    • (1987) Biochemistry , vol.26 , pp. 1412-1420
    • Brock, H.1
  • 23
    • 20444369555 scopus 로고    scopus 로고
    • Heteronuclear solution-state NMR studies of the chromophore in cyanobacterial phytochrome Cph1
    • DOI 10.1021/bi050457r
    • Strauss HM, Hughes J, Schmieder P (2005) Heteronuclear solution-state NMR studies of the chromophore in cyanobacterial phytochrome Cph1. Biochemistry 44:8244-8250. (Pubitemid 40799904)
    • (2005) Biochemistry , vol.44 , Issue.23 , pp. 8244-8250
    • Strauss, H.M.1    Hughes, J.2    Schmieder, P.3
  • 24
    • 55749110269 scopus 로고    scopus 로고
    • Light-induced chromophore activity and signal transduction in phytochromes observed by C-13 and N-15 magic-angle spinning NMR
    • Rohmer T, et al. (2008) Light-induced chromophore activity and signal transduction in phytochromes observed by C-13 and N-15 magic-angle spinning NMR. Proc Natl Acad Sci USA 105:15229-15234.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 15229-15234
    • Rohmer, T.1
  • 25
    • 0033576250 scopus 로고    scopus 로고
    • Protonation state and structural changes of the tetrapyrrole chromophore during the P-r → P-fr phototransformation of phytochrome: A resonance Raman spectroscopic study
    • Kneip C, et al. (1999) Protonation state and structural changes of the tetrapyrrole chromophore during the P-r → P-fr phototransformation of phytochrome: A resonance Raman spectroscopic study. Biochemistry 38:15185-15192.
    • (1999) Biochemistry , vol.38 , pp. 15185-15192
    • Kneip, C.1
  • 26
    • 51349128710 scopus 로고    scopus 로고
    • Photochemistry of hydrogen-bonded aromatic pairs: Quantum dynamical calculations for the pyrrole-pyridine complex
    • Lan ZG, Frutos LM, Sobolewski AL, Domcke W (2008) Photochemistry of hydrogen-bonded aromatic pairs: Quantum dynamical calculations for the pyrrole-pyridine complex. Proc Natl Acad Sci USA 105:12707-12712.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 12707-12712
    • Lan, Z.G.1    Frutos, L.M.2    Sobolewski, A.L.3    Domcke, W.4
  • 27
    • 2942640188 scopus 로고    scopus 로고
    • Hydrogen transfer in excited pyrrole-ammonia clusters
    • David O, et al. (2004) Hydrogen transfer in excited pyrrole-ammonia clusters. J Chem Phys 120:10101-10110.
    • (2004) J Chem Phys , vol.120 , pp. 10101-10110
    • David, O.1
  • 28
    • 0033305793 scopus 로고    scopus 로고
    • Proton and hydrogen atom tunnelling in hydrolytic and redox enzyme catalysis
    • Kuznetsov AM, Ulstrup J (1999) Proton and hydrogen atom tunnelling in hydrolytic and redox enzyme catalysis. Can J Chem 77:1085-1096.
    • (1999) Can J Chem , vol.77 , pp. 1085-1096
    • Kuznetsov, A.M.1    Ulstrup, J.2
  • 29
    • 35349013140 scopus 로고    scopus 로고
    • Relative ground and excited-state pK(a) values of phytochromobilin in the photoactivation of phytochrome: A computational study
    • Borg OA, Durbeej B (2007) Relative ground and excited-state pK(a) values of phytochromobilin in the photoactivation of phytochrome: A computational study. J Phys Chem B 111:11554-11565.
    • (2007) J Phys Chem B , vol.111 , pp. 11554-11565
    • Borg, O.A.1    Durbeej, B.2
  • 30
    • 53549114753 scopus 로고    scopus 로고
    • Proton transfer with a twist? Femtosecond dynamics of 7-(2-pyridyl)-indole in condensed phase and in supersonic jets
    • Nosenko Y, et al. (2008) Proton transfer with a twist? Femtosecond dynamics of 7-(2-pyridyl)-indole in condensed phase and in supersonic jets. Angew Chem Int Ed Engl 47:6037-6040.
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 6037-6040
    • Nosenko, Y.1
  • 31
    • 65549125395 scopus 로고    scopus 로고
    • Distinct classes of red/far-red photochemistry within the phytochrome superfamily
    • Rockwell NC, Shang L, Martin SS, Lagarias JC (2009) Distinct classes of red/far-red photochemistry within the phytochrome superfamily. Proc Natl Acad Sci USA 106:6123-6127.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 6123-6127
    • Rockwell, N.C.1    Shang, L.2    Martin, S.S.3    Lagarias, J.C.4
  • 32
    • 70449687165 scopus 로고    scopus 로고
    • Mapping GFP structure evolution during proton transfer with femtosecond Raman spectroscopy
    • Fang C, Frontiera RR, Tran R, Mathies RA (2009) Mapping GFP structure evolution during proton transfer with femtosecond Raman spectroscopy. Nature 462:200-U274.
    • (2009) Nature , vol.462
    • Fang, C.1    Frontiera, R.R.2    Tran, R.3    Mathies, R.A.4
  • 33
    • 11144239424 scopus 로고    scopus 로고
    • Uncovering the hidden ground state of green fluorescent protein
    • Kennis JTM, et al. (2004) Uncovering the hidden ground state of green fluorescent protein. Proc Natl Acad Sci USA 101:17988-17993.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17988-17993
    • Kennis, J.T.M.1
  • 35
    • 72149086405 scopus 로고    scopus 로고
    • Ultrafast transient absorption spectroscopy: Principles and application to photosynthetic systems
    • Berera R, van Grondelle R, Kennis JTM (2009) Ultrafast transient absorption spectroscopy: Principles and application to photosynthetic systems. Photosynth Res 101:105-118.
    • (2009) Photosynth Res , vol.101 , pp. 105-118
    • Berera, R.1    Van Grondelle, R.2    Kennis, J.T.M.3


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