Evolution of a bacteriophytochrome from light to redox sensor

EMBO Journal

Volumn 26, Issue 14, 2007, Pages 3322-3331

  Vuillet, Laurie ^a   Kojadinovic, Mila ^b   Zappa, Sébastien ^b   Jaubert, Marianne ^a   Adriano, Jean Marc ^b   Fardoux, Joël ^a   Hannibal, Laure ^a   Pignol, David ^b   Verméglio, André ^b   Giraud, Eric ^a  

^a LABORATOIRE DES SYMBIOSES TROPICALES ET MÉDITERRANÉENNES   (France)

^b IRFM   (France)

Author keywords

Bacteriophytochrome; Light harvesting complexes; Redox sensing; Rhodopseudomonas palustris

Indexed keywords

BACTERIAL PROTEIN; BACTERIOPHYTOCHROME RELATED PROTEIN 4; BILIVERDIN; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIOPHYTOCHROME; BINDING AFFINITY; CHROMATOPHORE; CONTROLLED STUDY; LIGHT HARVESTING SYSTEM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOACTIVATION; PHOTORECEPTOR; PHOTOSYNTHETIC PHOSPHORYLATION; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; REGULATORY MECHANISM; RHODOPSEUDOMONAS PALUSTRIS; SIGNAL TRANSDUCTION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; EVOLUTION, MOLECULAR; LIGHT; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; OXYGEN; PHOTOSYNTHESIS; PHYLOGENY; PHYTOCHROME; PROMOTER REGIONS (GENETICS); RECOMBINANT PROTEINS; RHODOPSEUDOMONAS; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

PHOTOBACTERIA; RHODOPSEUDOMONAS PALUSTRIS;

EID: 34547181229     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/sj.emboj.7601770     Document Type: Article

References (30)

1. Bhoo SH, Davis SJ, Walker J, Karniol B, Vierstra RD (2001) Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore. Nature 414: 776-779
2. Borucki B, von Stetten D, Seibeck S, Lamparter T, Michael N, Mroginski MA, Otto H, Murgida DH, Heyn MP, Hildebrandt P (2005) Light-induced proton release of phytochrome is coupled to the transient deprotonation of the tetrapyrrole chromophore. J Biol Chem 280: 34358-34364
3. Butler WL, Lane HC (1965) Dark transformations of phytochromes in vivo. II. Plant Physiol 40: 13-17
4. Eilfeld P, Rüdiger W (1985) Absorption spectra of phytochrome intermediates. Z Naturforsch 40C: 109-114
5. Elsen S, Jaubert M, Pignol D, Giraud E (2005) PpsR: a multifaceted regulator of photosynthesis gene expression in purple bacteria. Mol Microbiol 57: 17-26
6. Elsen S, Swem LR, Swem DL, Bauer CE (2004) RegB/RegA, a highly conserved redox-responding global two-component regulatory system. Microbiol Mol Biol R 68: 263-279
7. Evans K, Fordham-Skelton AP, Mistry H, Reynolds CD, Lawless AM, Papiz MZ (2005) A bacteriophytochrome regulates the synthesis of LH4 complexes in Rhodopseudomonas palustris. Photosynth Res 85: 169-180
8. Evans K, Grossmann G, Fordham-Skelton AP, Papiz MZ (2006) Small-angle X-ray scattering reveals the solution structure of a bacteriophytochrome in the catalytically active Pr state. J Mol Biol 364: 655-666
9. Evans MB, Hawthornthwaite AM, Cogdell RJ (1990) Isolation and characterisation of different B800-850 light-harvesting complexes from low-and high-light grown cells of Rhodopseudomonas palustris, strain 2.1.6. Biochim Biophys Acta 1016: 71-76
10. Giraud E, Fardoux J, Fourrier N, Hannibal L, Genty B, Bouyer P, Dreyfus B, Verméglio A (2002) Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria. Nature 417: 202-205
11. Giraud E, Zappa S, Jaubert M, Hannibal L, Fardoux J, Adriano J-M, Bouyer P, Genty B, Pignol D, Verméglio A (2004) Bacteriophytochrome and regulation of the synthesis of the photosynthetic apparatus in Rhodopseudomonas palustris: pitfalls of using laboratory strains. Photochem Photobiol Sci 3: 587-591
12. Giraud E, Zappa S, Vuillet L, Adriano J-M, Hannibal L, Fardoux J, Berthomieu C, Bouyer P, Pignol D, Verméglio A (2005) A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomonas palustris. J Biol Chem 280: 32389-32397
13. Hartigan N, Tharia HA, Sweeney F, Lawless AM, Papiz MZ (2002) The 7.5-Å electron density and spectroscopic properties of a novel low-light B800 LH2 from Rhodopseudomonas palustris. Biophys J 82: 963-977
14. Jaubert M, Lavergne J, Fardoux J, Hannibal L, Vuillet L, Adriano J-M, Bouyer P, Pignol D, Giraud E, Verméglio A (2007) A singular bacteriophytchrome acquired by lateral gene transfer. J Biol Chem 282: 7320-7328
15. Jaubert M, Zappa S, Fardoux J, Adriano J-M, Hannibal L, Elsen S, Lavergne J, Verméglio A, Giraud E, Pignol D (2004) Light and redox control of photosynthesis gene expression in Bradyrhizobium: dual roles of two PpsR. J Biol Chem 279: 44407-44416
16. Jiang ZY, Swem LR, Rushing BG, Devanathan S, Tollin G, Bauer CE (1999) Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes. Science 285: 406-409
17. Karniol B, Viestra RD (2003) The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties. Proc Natl Acad Sci USA 100: 2807-2812
18. Karniol B, Wagner JR, Walker JM, Vierstra RD (2005) Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors. Biochem J 392: 103-116
19. Kokotek W, Lotz W (1989) Construction of a lacZ-kanamycine- resistance cassette, useful for site-directed mutagenesis and as a promoter probe. Gene 84: 467-471
20. Lamparter T, Michael N, Mittmann F, Esteban B (2002) Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment site. Proc Natl Acad Sci USA 99: 11628-11633
21. Larimer FW, Chain P, Hauser L, Lamerdin J, Malfatti S, Do L, Land ML, Pelletier DA, Beatty JT, Lang AS, Tabita FR, Gibson JL, Hanson TE, Bobst C, Torres JL, Peres C, Harrison FH, Gibson J, Harwood CS (2004) Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nat Biotech 22: 55-61
22. Masuda S, Dong C, Swem D, Setterdahl AT, Knaff DB, Bauer CE (2002) Repression of photosynthesis gene expression by formation of a disulfide bond in CrtJ. Proc Natl Acad Sci USA 99: 7078-7083
23. II or NtrB): trans-phosphorylation between subunits. J Bacteriol 175: 7024-7032
24. Paget MS, Buttner MJ (2003) Thiol-based regulatory switches. Annu Rev Genet 37: 91-121
25. Quandt J, Hynes MF (1993) Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria. Gene 127: 15-21
26. Rockwell NC, Su YS, Lagarias JC (2006) Phytochrome structure and signaling mechanisms. Annu Rev Plant Biol 57: 837-858
27. Swem LR, Kraft BJ, Swem DL, Setterdahl AT, Masuda S, Knaff DB, Zaleski JM, Bauer CE (2003) Signal transduction by the global regulator RegB is mediated by a redox-active cysteine. EMBO J 22: 4699-4708
28. Tadros MH, Waterkamp K (1989) Multiple copies of the coding regions for the light-harvesting B800-850 alpha- and beta-polypeptides are present in the Rhodopseudomonas palustris genome. EMBO J 8: 1303-1308
29. Wagner JR, Brunzelle JS, Forest KT, Vierstra RD (2005) A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome. Nature 438: 325-331
30. Yang Y, Inouye M (1991) Intermolecular complementation between two defective mutant signal-transducing receptors of Escherichia coli. Proc Natl Acad Sci USA 88: 11057-11061