-
1
-
-
84869065150
-
Chromothripsis: Chromosomes in crisis
-
Jones, M. J.; Jallepalli, P. V. Chromothripsis: chromosomes in crisis Dev. Cell 2012, 23 (5) 908-17
-
(2012)
Dev. Cell
, vol.23
, Issue.5
, pp. 908-917
-
-
Jones, M.J.1
Jallepalli, P.V.2
-
2
-
-
48249143703
-
Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: Potential role in progression
-
Scotto, L.; Narayan, G.; Nandula, S. V.; Arias-Pulido, H.; Subramaniyam, S.; Schneider, A.; Kaufmann, A. M.; Wright, J. D.; Pothuri, B.; Mansukhani, M.; Murty, V. V. Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: potential role in progression Genes, Chromosomes Cancer 2008, 47 (9) 755-65
-
(2008)
Genes, Chromosomes Cancer
, vol.47
, Issue.9
, pp. 755-765
-
-
Scotto, L.1
Narayan, G.2
Nandula, S.V.3
Arias-Pulido, H.4
Subramaniyam, S.5
Schneider, A.6
Kaufmann, A.M.7
Wright, J.D.8
Pothuri, B.9
Mansukhani, M.10
Murty, V.V.11
-
3
-
-
70349269042
-
High resolution analysis of DNA copy-number aberrations of chromosomes 8, 13, and 20 in gastric cancers
-
Buffart, T. E.; van Grieken, N. C.; Tijssen, M.; Coffa, J.; Ylstra, B.; Grabsch, H. I.; van de Velde, C. J.; Carvalho, B.; Meijer, G. A. High resolution analysis of DNA copy-number aberrations of chromosomes 8, 13, and 20 in gastric cancers Virchows Arch. 2009, 455 (3) 213-23
-
(2009)
Virchows Arch.
, vol.455
, Issue.3
, pp. 213-223
-
-
Buffart, T.E.1
Van Grieken, N.C.2
Tijssen, M.3
Coffa, J.4
Ylstra, B.5
Grabsch, H.I.6
Van De Velde, C.J.7
Carvalho, B.8
Meijer, G.A.9
-
4
-
-
26944467118
-
Deletion at chromosome band 20p12.1 in colorectal cancer revealed by high resolution array comparative genomic hybridization
-
Davison, E. J.; Tarpey, P. S.; Fiegler, H.; Tomlinson, I. P.; Carter, N. P. Deletion at chromosome band 20p12.1 in colorectal cancer revealed by high resolution array comparative genomic hybridization Genes, Chromosomes Cancer 2005, 44 (4) 384-91
-
(2005)
Genes, Chromosomes Cancer
, vol.44
, Issue.4
, pp. 384-391
-
-
Davison, E.J.1
Tarpey, P.S.2
Fiegler, H.3
Tomlinson, I.P.4
Carter, N.P.5
-
5
-
-
0035924324
-
The DNA sequence and comparative analysis of human chromosome 20
-
Deloukas, P.; Matthews, L. H.; Ashurst, J.; Burton, J.; Gilbert, J. G.; Jones, M.; Stavrides, G.; Almeida, J. P.; Babbage, A. K.; Bagguley, C. L.; Bailey, J.; Barlow, K. F.; Bates, K. N.; Beard, L. M.; Beare, D. M.; Beasley, O. P.; Bird, C. P.; Blakey, S. E.; Bridgeman, A. M.; Brown, A. J.; Buck, D.; Burrill, W.; Butler, A. P.; Carder, C.; Carter, N. P.; Chapman, J. C.; Clamp, M.; Clark, G.; Clark, L. N.; Clark, S. Y.; Clee, C. M.; Clegg, S.; Cobley, V. E.; Collier, R. E.; Connor, R.; Corby, N. R.; Coulson, A.; Coville, G. J.; Deadman, R.; Dhami, P.; Dunn, M.; Ellington, A. G.; Frankland, J. A.; Fraser, A.; French, L.; Garner, P.; Grafham, D. V.; Griffiths, C.; Griffiths, M. N.; Gwilliam, R.; Hall, R. E.; Hammond, S.; Harley, J. L.; Heath, P. D.; Ho, S.; Holden, J. L.; Howden, P. J.; Huckle, E.; Hunt, A. R.; Hunt, S. E.; Jekosch, K.; Johnson, C. M.; Johnson, D.; Kay, M. P.; Kimberley, A. M.; King, A.; Knights, A.; Laird, G. K.; Lawlor, S.; Lehvaslaiho, M. H.; Leversha, M.; Lloyd, C.; Lloyd, D. M.; Lovell, J. D.; Marsh, V. L.; Martin, S. L.; McConnachie, L. J.; McLay, K.; McMurray, A. A.; Milne, S.; Mistry, D.; Moore, M. J.; Mullikin, J. C.; Nickerson, T.; Oliver, K.; Parker, A.; Patel, R.; Pearce, T. A.; Peck, A. I.; Phillimore, B. J.; Prathalingam, S. R.; Plumb, R. W.; Ramsay, H.; Rice, C. M.; Ross, M. T.; Scott, C. E.; Sehra, H. K.; Shownkeen, R.; Sims, S.; Skuce, C. D.; Smith, M. L.; Soderlund, C.; Steward, C. A.; Sulston, J. E.; Swann, M.; Sycamore, N.; Taylor, R.; Tee, L.; Thomas, D. W.; Thorpe, A.; Tracey, A.; Tromans, A. C.; Vaudin, M.; Wall, M.; Wallis, J. M.; Whitehead, S. L.; Whittaker, P.; Willey, D. L.; Williams, L.; Williams, S. A.; Wilming, L.; Wray, P. W.; Hubbard, T.; Durbin, R. M.; Bentley, D. R.; Beck, S.; Rogers, J. The DNA sequence and comparative analysis of human chromosome 20 Nature 2001, 414 (6866) 865-71
-
(2001)
Nature
, vol.414
, Issue.6866
, pp. 865-871
-
-
Deloukas, P.1
Matthews, L.H.2
Ashurst, J.3
Burton, J.4
Gilbert, J.G.5
Jones, M.6
Stavrides, G.7
Almeida, J.P.8
Babbage, A.K.9
Bagguley, C.L.10
Bailey, J.11
Barlow, K.F.12
Bates, K.N.13
Beard, L.M.14
Beare, D.M.15
Beasley, O.P.16
Bird, C.P.17
Blakey, S.E.18
Bridgeman, A.M.19
Brown, A.J.20
Buck, D.21
Burrill, W.22
Butler, A.P.23
Carder, C.24
Carter, N.P.25
Chapman, J.C.26
Clamp, M.27
Clark, G.28
Clark, L.N.29
Clark, S.Y.30
Clee, C.M.31
Clegg, S.32
Cobley, V.E.33
Collier, R.E.34
Connor, R.35
Corby, N.R.36
Coulson, A.37
Coville, G.J.38
Deadman, R.39
Dhami, P.40
Dunn, M.41
Ellington, A.G.42
Frankland, J.A.43
Fraser, A.44
French, L.45
Garner, P.46
Grafham, D.V.47
Griffiths, C.48
Griffiths, M.N.49
Gwilliam, R.50
Hall, R.E.51
Hammond, S.52
Harley, J.L.53
Heath, P.D.54
Ho, S.55
Holden, J.L.56
Howden, P.J.57
Huckle, E.58
Hunt, A.R.59
Hunt, S.E.60
Jekosch, K.61
Johnson, C.M.62
Johnson, D.63
Kay, M.P.64
Kimberley, A.M.65
King, A.66
Knights, A.67
Laird, G.K.68
Lawlor, S.69
Lehvaslaiho, M.H.70
Leversha, M.71
Lloyd, C.72
Lloyd, D.M.73
Lovell, J.D.74
Marsh, V.L.75
Martin, S.L.76
McConnachie, L.J.77
McLay, K.78
McMurray, A.A.79
Milne, S.80
Mistry, D.81
Moore, M.J.82
Mullikin, J.C.83
Nickerson, T.84
Oliver, K.85
Parker, A.86
Patel, R.87
Pearce, T.A.88
Peck, A.I.89
Phillimore, B.J.90
Prathalingam, S.R.91
Plumb, R.W.92
Ramsay, H.93
Rice, C.M.94
Ross, M.T.95
Scott, C.E.96
Sehra, H.K.97
Shownkeen, R.98
Sims, S.99
more..
-
6
-
-
33745700257
-
Pancreatic adenocarcinoma - Genetic portrait from chromosomes to microarrays
-
Karhu, R.; Mahlamaki, E.; Kallioniemi, A. Pancreatic adenocarcinoma - genetic portrait from chromosomes to microarrays Genes, Chromosomes Cancer 2006, 45 (8) 721-30
-
(2006)
Genes, Chromosomes Cancer
, vol.45
, Issue.8
, pp. 721-730
-
-
Karhu, R.1
Mahlamaki, E.2
Kallioniemi, A.3
-
7
-
-
0037738856
-
Genome amplification of chromosome 20 in breast cancer
-
Hodgson, J. G.; Chin, K.; Collins, C.; Gray, J. W. Genome amplification of chromosome 20 in breast cancer Breast Cancer Res. Treat. 2003, 78 (3) 337-45
-
(2003)
Breast Cancer Res. Treat.
, vol.78
, Issue.3
, pp. 337-345
-
-
Hodgson, J.G.1
Chin, K.2
Collins, C.3
Gray, J.W.4
-
8
-
-
79551629826
-
Amplification of the 20q chromosomal arm occurs early in tumorigenic transformation and may initiate cancer
-
Tabach, Y.; Kogan-Sakin, I.; Buganim, Y.; Solomon, H.; Goldfinger, N.; Hovland, R.; Ke, X. S.; Oyan, A. M.; Kalland, K. H.; Rotter, V.; Domany, E. Amplification of the 20q chromosomal arm occurs early in tumorigenic transformation and may initiate cancer PLoS One 2011, 6 (1) e14632
-
(2011)
PLoS One
, vol.6
, Issue.1
, pp. 14632
-
-
Tabach, Y.1
Kogan-Sakin, I.2
Buganim, Y.3
Solomon, H.4
Goldfinger, N.5
Hovland, R.6
Ke, X.S.7
Oyan, A.M.8
Kalland, K.H.9
Rotter, V.10
Domany, E.11
-
9
-
-
84856622604
-
Critical amino acid residues in proteins: A BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations
-
Ndegwa, N.; Cote, R. G.; Ovelleiro, D.; D'Eustachio, P.; Hermjakob, H.; Vizcaino, J. A.; Croft, D. Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations Database 2011, 2011, bar047
-
(2011)
Database
, vol.2011
, pp. 047
-
-
Ndegwa, N.1
Cote, R.G.2
Ovelleiro, D.3
D'Eustachio, P.4
Hermjakob, H.5
Vizcaino, J.A.6
Croft, D.7
-
10
-
-
84883445553
-
Next generation analysis of breast cancer genomes for precision medicine
-
Previati, M.; Manfrini, M.; Galasso, M.; Zerbinati, C.; Palatini, J.; Gasparini, P.; Volinia, S. Next generation analysis of breast cancer genomes for precision medicine Cancer Lett. 2013, 339 (1) 1-7
-
(2013)
Cancer Lett.
, vol.339
, Issue.1
, pp. 1-7
-
-
Previati, M.1
Manfrini, M.2
Galasso, M.3
Zerbinati, C.4
Palatini, J.5
Gasparini, P.6
Volinia, S.7
-
11
-
-
84880063629
-
From human genome to cancer genome: The first decade
-
Wheeler, D. A.; Wang, L. From human genome to cancer genome: The first decade Genome Res. 2013, 23 (7) 1054-62
-
(2013)
Genome Res.
, vol.23
, Issue.7
, pp. 1054-1062
-
-
Wheeler, D.A.1
Wang, L.2
-
12
-
-
84875159380
-
Pancreatic cancer genomics: Insights and opportunities for clinical translation
-
Makohon-Moore, A.; Brosnan, J. A.; Iacobuzio-Donahue, C. A. Pancreatic cancer genomics: insights and opportunities for clinical translation Genome Med. 2013, 5 (3) 26
-
(2013)
Genome Med.
, vol.5
, Issue.3
, pp. 26
-
-
Makohon-Moore, A.1
Brosnan, J.A.2
Iacobuzio-Donahue, C.A.3
-
13
-
-
84880452562
-
Genomics-driven oncology: Framework for an emerging paradigm
-
Garraway, L. A. Genomics-driven oncology: framework for an emerging paradigm J. Clin. Oncol. 2013, 31 (15) 1806-14
-
(2013)
J. Clin. Oncol.
, vol.31
, Issue.15
, pp. 1806-1814
-
-
Garraway, L.A.1
-
14
-
-
84863723010
-
The mutational landscape of lethal castration-resistant prostate cancer
-
Grasso, C. S.; Wu, Y. M.; Robinson, D. R.; Cao, X.; Dhanasekaran, S. M.; Khan, A. P.; Quist, M. J.; Jing, X.; Lonigro, R. J.; Brenner, J. C.; Asangani, I. A.; Ateeq, B.; Chun, S. Y.; Siddiqui, J.; Sam, L.; Anstett, M.; Mehra, R.; Prensner, J. R.; Palanisamy, N.; Ryslik, G. A.; Vandin, F.; Raphael, B. J.; Kunju, L. P.; Rhodes, D. R.; Pienta, K. J.; Chinnaiyan, A. M.; Tomlins, S. A. The mutational landscape of lethal castration-resistant prostate cancer Nature 2012, 487 (7406) 239-43
-
(2012)
Nature
, vol.487
, Issue.7406
, pp. 239-243
-
-
Grasso, C.S.1
Wu, Y.M.2
Robinson, D.R.3
Cao, X.4
Dhanasekaran, S.M.5
Khan, A.P.6
Quist, M.J.7
Jing, X.8
Lonigro, R.J.9
Brenner, J.C.10
Asangani, I.A.11
Ateeq, B.12
Chun, S.Y.13
Siddiqui, J.14
Sam, L.15
Anstett, M.16
Mehra, R.17
Prensner, J.R.18
Palanisamy, N.19
Ryslik, G.A.20
Vandin, F.21
Raphael, B.J.22
Kunju, L.P.23
Rhodes, D.R.24
Pienta, K.J.25
Chinnaiyan, A.M.26
Tomlins, S.A.27
more..
-
15
-
-
84883823918
-
The mutational landscape of prostate cancer.
-
Barbieri, C. E.; Bangma, C. H.; Bjartell, A.; Catto, J. W.; Culig, Z.; Gronberg, H.; Luo, J.; Visakorpi, T.; Rubin, M. A. The mutational landscape of prostate cancer. Eur. Urol. 2013, 64 (4) 567-76
-
(2013)
Eur. Urol.
, vol.64
, Issue.4
, pp. 567-576
-
-
Barbieri, C.E.1
Bangma, C.H.2
Bjartell, A.3
Catto, J.W.4
Culig, Z.5
Gronberg, H.6
Luo, J.7
Visakorpi, T.8
Rubin, M.A.9
-
16
-
-
84872050090
-
Translating genomics to the clinic: Implications of cancer heterogeneity
-
Samuel, N.; Hudson, T. J. Translating genomics to the clinic: implications of cancer heterogeneity Clin. Chem. 2013, 59 (1) 127-37
-
(2013)
Clin. Chem.
, vol.59
, Issue.1
, pp. 127-137
-
-
Samuel, N.1
Hudson, T.J.2
-
17
-
-
84888175721
-
Integrating multiple 'omics' analyses identifies serological protein biomarkers for preeclampsia
-
Liu, L. Y.; Yang, T.; Ji, J.; Wen, Q.; Morgan, A. A.; Jin, B.; Chen, G.; Lyell, D. J.; Stevenson, D. K.; Ling, X. B.; Butte, A. J. Integrating multiple 'omics' analyses identifies serological protein biomarkers for preeclampsia BMC Med. 2013, 11 (1) 236
-
(2013)
BMC Med.
, vol.11
, Issue.1
, pp. 236
-
-
Liu, L.Y.1
Yang, T.2
Ji, J.3
Wen, Q.4
Morgan, A.A.5
Jin, B.6
Chen, G.7
Lyell, D.J.8
Stevenson, D.K.9
Ling, X.B.10
Butte, A.J.11
-
18
-
-
84879639724
-
Integrative ″omics″-approach discovers dynamic and regulatory features of bacterial stress responses
-
Berghoff, B. A.; Konzer, A.; Mank, N. N.; Looso, M.; Rische, T.; Forstner, K. U.; Kruger, M.; Klug, G. Integrative ″omics″-approach discovers dynamic and regulatory features of bacterial stress responses PLoS Genet. 2013, 9 (6) e1003576
-
(2013)
PLoS Genet.
, vol.9
, Issue.6
, pp. 1003576
-
-
Berghoff, B.A.1
Konzer, A.2
Mank, N.N.3
Looso, M.4
Rische, T.5
Forstner, K.U.6
Kruger, M.7
Klug, G.8
-
19
-
-
0035312314
-
Translation control: Bridging the gap between genomics and proteomics?
-
Pradet-Balade, B.; Boulme, F.; Beug, H.; Mullner, E. W.; Garcia-Sanz, J. A. Translation control: bridging the gap between genomics and proteomics? Trends Biochem. Sci. 2001, 26 (4) 225-9
-
(2001)
Trends Biochem. Sci.
, vol.26
, Issue.4
, pp. 225-229
-
-
Pradet-Balade, B.1
Boulme, F.2
Beug, H.3
Mullner, E.W.4
Garcia-Sanz, J.A.5
-
20
-
-
84877285213
-
Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific
-
Wang, T.; Cui, Y.; Jin, J.; Guo, J.; Wang, G.; Yin, X.; He, Q. Y.; Zhang, G. Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific Nucleic Acids Res. 2013, 41 (9) 4743-54
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.9
, pp. 4743-4754
-
-
Wang, T.1
Cui, Y.2
Jin, J.3
Guo, J.4
Wang, G.5
Yin, X.6
He, Q.Y.7
Zhang, G.8
-
21
-
-
79960179572
-
The human proteome project: Current state and future direction
-
009993
-
Legrain, P.; Aebersold, R.; Archakov, A.; Bairoch, A.; Bala, K.; Beretta, L.; Bergeron, J.; Borchers, C. H.; Corthals, G. L.; Costello, C. E.; Deutsch, E. W.; Domon, B.; Hancock, W.; He, F.; Hochstrasser, D.; Marko-Varga, G.; Salekdeh, G. H.; Sechi, S.; Snyder, M.; Srivastava, S.; Uhlen, M.; Wu, C. H.; Yamamoto, T.; Paik, Y. K.; Omenn, G. S. The human proteome project: current state and future direction Mol. Cell. Proteomics 2011, 10 (7) M111 009993
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.7
, pp. 111
-
-
Legrain, P.1
Aebersold, R.2
Archakov, A.3
Bairoch, A.4
Bala, K.5
Beretta, L.6
Bergeron, J.7
Borchers, C.H.8
Corthals, G.L.9
Costello, C.E.10
Deutsch, E.W.11
Domon, B.12
Hancock, W.13
He, F.14
Hochstrasser, D.15
Marko-Varga, G.16
Salekdeh, G.H.17
Sechi, S.18
Snyder, M.19
Srivastava, S.20
Uhlen, M.21
Wu, C.H.22
Yamamoto, T.23
Paik, Y.K.24
Omenn, G.S.25
more..
-
22
-
-
84863229647
-
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome
-
Paik, Y. K.; Jeong, S. K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; Cho, S. Y.; Lee, H. J.; Na, K.; Choi, E. Y.; Yan, F.; Zhang, F.; Zhang, Y.; Snyder, M.; Cheng, Y.; Chen, R.; Marko-Varga, G.; Deutsch, E. W.; Kim, H.; Kwon, J. Y.; Aebersold, R.; Bairoch, A.; Taylor, A. D.; Kim, K. Y.; Lee, E. Y.; Hochstrasser, D.; Legrain, P.; Hancock, W. S. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome Nat. Biotechnol. 2012, 30 (3) 221-3
-
(2012)
Nat. Biotechnol.
, vol.30
, Issue.3
, pp. 221-223
-
-
Paik, Y.K.1
Jeong, S.K.2
Omenn, G.S.3
Uhlen, M.4
Hanash, S.5
Cho, S.Y.6
Lee, H.J.7
Na, K.8
Choi, E.Y.9
Yan, F.10
Zhang, F.11
Zhang, Y.12
Snyder, M.13
Cheng, Y.14
Chen, R.15
Marko-Varga, G.16
Deutsch, E.W.17
Kim, H.18
Kwon, J.Y.19
Aebersold, R.20
Bairoch, A.21
Taylor, A.D.22
Kim, K.Y.23
Lee, E.Y.24
Hochstrasser, D.25
Legrain, P.26
Hancock, W.S.27
more..
-
23
-
-
84863890852
-
Mulberry Leaf Polyphenol Extract Induced Apoptosis Involving Regulation of Adenosine Monophosphate-Activated Protein Kinase/Fatty Acid Synthase in a p53-Negative Hepatocellular Carcinoma Cell
-
Yang, T. P.; Lee, H. J.; Ou, T. T.; Chang, Y. J.; Wang, C. J. Mulberry Leaf Polyphenol Extract Induced Apoptosis Involving Regulation of Adenosine Monophosphate-Activated Protein Kinase/Fatty Acid Synthase in a p53-Negative Hepatocellular Carcinoma Cell J. Agric. Food Chem. 2012, 60 (27) 6891-6898
-
(2012)
J. Agric. Food Chem.
, vol.60
, Issue.27
, pp. 6891-6898
-
-
Yang, T.P.1
Lee, H.J.2
Ou, T.T.3
Chang, Y.J.4
Wang, C.J.5
-
24
-
-
80053652269
-
Benzo(a)pyrene-induced mitochondrial dysfunction and cell death in p53-null Hep3B cells
-
Jiang, Y.; Zhou, X.; Chen, X.; Yang, G.; Wang, Q.; Rao, K.; Xiong, W.; Yuan, J. Benzo(a)pyrene-induced mitochondrial dysfunction and cell death in p53-null Hep3B cells Mutat. Res. 2011, 726 (1) 75-83
-
(2011)
Mutat. Res.
, vol.726
, Issue.1
, pp. 75-83
-
-
Jiang, Y.1
Zhou, X.2
Chen, X.3
Yang, G.4
Wang, Q.5
Rao, K.6
Xiong, W.7
Yuan, J.8
-
25
-
-
4344589523
-
Stepwise metastatic human hepatocellular carcinoma cell model system with multiple metastatic potentials established through consecutive in vivo selection and studies on metastatic characteristics
-
Li, Y.; Tian, B.; Yang, J.; Zhao, L.; Wu, X.; Ye, S. L.; Liu, Y. K.; Tang, Z. Y. Stepwise metastatic human hepatocellular carcinoma cell model system with multiple metastatic potentials established through consecutive in vivo selection and studies on metastatic characteristics J. Cancer Res. Clin. Oncol. 2004, 130 (8) 460-8
-
(2004)
J. Cancer Res. Clin. Oncol.
, vol.130
, Issue.8
, pp. 460-468
-
-
Li, Y.1
Tian, B.2
Yang, J.3
Zhao, L.4
Wu, X.5
Ye, S.L.6
Liu, Y.K.7
Tang, Z.Y.8
-
26
-
-
84862227622
-
FANSe: An accurate algorithm for quantitative mapping of large scale sequencing reads
-
Zhang, G.; Fedyunin, I.; Kirchner, S.; Xiao, C.; Valleriani, A.; Ignatova, Z. FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads Nucleic Acids Res. 2012, 40 (11) e83
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.11
, pp. 83
-
-
Zhang, G.1
Fedyunin, I.2
Kirchner, S.3
Xiao, C.4
Valleriani, A.5
Ignatova, Z.6
-
27
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C.; Pachter, L.; Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq Bioinformatics 2009, 25 (9) 1105-11
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
28
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H.; Handsaker, B.; Wysoker, A.; Fennell, T.; Ruan, J.; Homer, N.; Marth, G.; Abecasis, G.; Durbin, R. The Sequence Alignment/Map format and SAMtools Bioinformatics 2009, 25 (16) 2078-9
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
29
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
Wang, K.; Li, M.; Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Nucleic Acids Res. 2010, 38 (16) e164
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.16
, pp. 164
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
30
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A.; Williams, B. A.; McCue, K.; Schaeffer, L.; Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq Nat. Methods 2008, 5 (7) 621-8
-
(2008)
Nat. Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
31
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D.; McCarthy, D. J.; Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data Bioinformatics 2010, 26 (1) 139-40
-
(2010)
Bioinformatics
, vol.26
, Issue.1
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
32
-
-
54949129419
-
ProteoWizard: Open source software for rapid proteomics tools development
-
Kessner, D.; Chambers, M.; Burke, R.; Agus, D.; Mallick, P. ProteoWizard: open source software for rapid proteomics tools development Bioinformatics 2008, 24 (21) 2534-6
-
(2008)
Bioinformatics
, vol.24
, Issue.21
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
33
-
-
84874083098
-
First proteomic exploration of protein-encoding genes on chromosome 1 in human liver, stomach, and colon
-
Wu, S.; Li, N.; Ma, J.; Shen, H.; Jiang, D.; Chang, C.; Zhang, C.; Li, L.; Zhang, H.; Jiang, J.; Xu, Z.; Ping, L.; Chen, T.; Zhang, W.; Zhang, T.; Xing, X.; Yi, T.; Li, Y.; Fan, F.; Li, X.; Zhong, F.; Wang, Q.; Zhang, Y.; Wen, B.; Yan, G.; Lin, L.; Yao, J.; Lin, Z.; Wu, F.; Xie, L.; Yu, H.; Liu, M.; Lu, H.; Mu, H.; Li, D.; Zhu, W.; Zhen, B.; Qian, X.; Qin, J.; Liu, S.; Yang, P.; Zhu, Y.; Xu, P.; He, F. First proteomic exploration of protein-encoding genes on chromosome 1 in human liver, stomach, and colon J. Proteome Res. 2013, 12 (1) 67-80
-
(2013)
J. Proteome Res.
, vol.12
, Issue.1
, pp. 67-80
-
-
Wu, S.1
Li, N.2
Ma, J.3
Shen, H.4
Jiang, D.5
Chang, C.6
Zhang, C.7
Li, L.8
Zhang, H.9
Jiang, J.10
Xu, Z.11
Ping, L.12
Chen, T.13
Zhang, W.14
Zhang, T.15
Xing, X.16
Yi, T.17
Li, Y.18
Fan, F.19
Li, X.20
Zhong, F.21
Wang, Q.22
Zhang, Y.23
Wen, B.24
Yan, G.25
Lin, L.26
Yao, J.27
Lin, Z.28
Wu, F.29
Xie, L.30
Yu, H.31
Liu, M.32
Lu, H.33
Mu, H.34
Li, D.35
Zhu, W.36
Zhen, B.37
Qian, X.38
Qin, J.39
Liu, S.40
Yang, P.41
Zhu, Y.42
Xu, P.43
He, F.44
more..
-
34
-
-
84874026295
-
Qualitative and quantitative expression status of the human chromosome 20 genes in cancer tissues and the representative cell lines
-
Wang, Q.; Wen, B.; Yan, G.; Wei, J.; Xie, L.; Xu, S.; Jiang, D.; Wang, T.; Lin, L.; Zi, J.; Zhang, J.; Zhou, R.; Zhao, H.; Ren, Z.; Qu, N.; Lou, X.; Sun, H.; Du, C.; Chen, C.; Zhang, S.; Tan, F.; Xian, Y.; Gao, Z.; He, M.; Chen, L.; Zhao, X.; Xu, P.; Zhu, Y.; Yin, X.; Shen, H.; Zhang, Y.; Jiang, J.; Zhang, C.; Li, L.; Chang, C.; Ma, J.; Yao, J.; Lu, H.; Ying, W.; Zhong, F.; He, Q. Y.; Liu, S. Qualitative and quantitative expression status of the human chromosome 20 genes in cancer tissues and the representative cell lines J. Proteome Res. 2013, 12 (1) 151-61
-
(2013)
J. Proteome Res.
, vol.12
, Issue.1
, pp. 151-161
-
-
Wang, Q.1
Wen, B.2
Yan, G.3
Wei, J.4
Xie, L.5
Xu, S.6
Jiang, D.7
Wang, T.8
Lin, L.9
Zi, J.10
Zhang, J.11
Zhou, R.12
Zhao, H.13
Ren, Z.14
Qu, N.15
Lou, X.16
Sun, H.17
Du, C.18
Chen, C.19
Zhang, S.20
Tan, F.21
Xian, Y.22
Gao, Z.23
He, M.24
Chen, L.25
Zhao, X.26
Xu, P.27
Zhu, Y.28
Yin, X.29
Shen, H.30
Zhang, Y.31
Jiang, J.32
Zhang, C.33
Li, L.34
Chang, C.35
Ma, J.36
Yao, J.37
Lu, H.38
Ying, W.39
Zhong, F.40
He, Q.Y.41
Liu, S.42
more..
-
35
-
-
84874026295
-
Qualitative and quantitative expression status of the human chromosome 20 genes in cancer tissues and the representative cell lines
-
Wang, Q.; Wen, B.; Yan, G.; Wei, J.; Xie, L.; Xu, S.; Jiang, D.; Wang, T.; Lin, L.; Zi, J.; Zhang, J.; Zhou, R.; Zhao, H.; Ren, Z.; Qu, N.; Lou, X.; Sun, H.; Du, C.; Chen, C.; Zhang, S.; Tan, F.; Xian, Y.; Gao, Z.; He, M.; Chen, L.; Zhao, X.; Xu, P.; Zhu, Y.; Yin, X.; Shen, H.; Zhang, Y.; Jiang, J.; Zhang, C.; Li, L.; Chang, C.; Ma, J.; Yan, G.; Yao, J.; Lu, H.; Ying, W.; Zhong, F.; He, Q. Y.; Liu, S. Qualitative and quantitative expression status of the human chromosome 20 genes in cancer tissues and the representative cell lines J. Proteome Res. 2013, 12 (1) 151-61
-
(2013)
J. Proteome Res.
, vol.12
, Issue.1
, pp. 151-161
-
-
Wang, Q.1
Wen, B.2
Yan, G.3
Wei, J.4
Xie, L.5
Xu, S.6
Jiang, D.7
Wang, T.8
Lin, L.9
Zi, J.10
Zhang, J.11
Zhou, R.12
Zhao, H.13
Ren, Z.14
Qu, N.15
Lou, X.16
Sun, H.17
Du, C.18
Chen, C.19
Zhang, S.20
Tan, F.21
Xian, Y.22
Gao, Z.23
He, M.24
Chen, L.25
Zhao, X.26
Xu, P.27
Zhu, Y.28
Yin, X.29
Shen, H.30
Zhang, Y.31
Jiang, J.32
Zhang, C.33
Li, L.34
Chang, C.35
Ma, J.36
Yan, G.37
Yao, J.38
Lu, H.39
Ying, W.40
Zhong, F.41
He, Q.Y.42
Liu, S.43
more..
-
36
-
-
84867237397
-
Human alpha-defensin (DEFA) gene expression helps to characterise benign and malignant salivary gland tumours
-
Winter, J.; Pantelis, A.; Kraus, D.; Reckenbeil, J.; Reich, R.; Jepsen, S.; Fischer, H. P.; Allam, J. P.; Novak, N.; Wenghoefer, M. Human alpha-defensin (DEFA) gene expression helps to characterise benign and malignant salivary gland tumours BMC Cancer 2012, 12, 465
-
(2012)
BMC Cancer
, vol.12
, pp. 465
-
-
Winter, J.1
Pantelis, A.2
Kraus, D.3
Reckenbeil, J.4
Reich, R.5
Jepsen, S.6
Fischer, H.P.7
Allam, J.P.8
Novak, N.9
Wenghoefer, M.10
-
37
-
-
84880875182
-
Biologic activities of recombinant human-beta-defensin-4 toward cultured human cancer cells
-
Gerashchenko, O. L.; Zhuravel, E. V.; Skachkova, O. V.; Khranovska, N. N.; Filonenko, V. V.; Pogrebnoy, P. V.; Soldatkina, M. A. Biologic activities of recombinant human-beta-defensin-4 toward cultured human cancer cells Exp Oncol 2013, 35 (2) 76-82
-
(2013)
Exp Oncol
, vol.35
, Issue.2
, pp. 76-82
-
-
Gerashchenko, O.L.1
Zhuravel, E.V.2
Skachkova, O.V.3
Khranovska, N.N.4
Filonenko, V.V.5
Pogrebnoy, P.V.6
Soldatkina, M.A.7
-
38
-
-
84891781300
-
Gene therapy with beta defensin-2 induces anti-tumor immunity and enhances local anti-tumor effects
-
10.1089/hum.2013.161
-
Li, D.; Wang, W.; Shi, H.; Fu, Y. J.; Chen, X.; Chen, X.; Liu, Y. T.; Kan, B.; Wang, Y. Gene therapy with beta defensin-2 induces anti-tumor immunity and enhances local anti-tumor effects Hum. Gene Ther. 2013, 10.1089/hum.2013.161
-
(2013)
Hum. Gene Ther.
-
-
Li, D.1
Wang, W.2
Shi, H.3
Fu, Y.J.4
Chen, X.5
Chen, X.6
Liu, Y.T.7
Kan, B.8
Wang, Y.9
-
39
-
-
33749036894
-
Human beta-defensin-1, a potential chromosome 8p tumor suppressor: Control of transcription and induction of apoptosis in renal cell carcinoma
-
Sun, C. Q.; Arnold, R.; Fernandez-Golarz, C.; Parrish, A. B.; Almekinder, T.; He, J.; Ho, S. M.; Svoboda, P.; Pohl, J.; Marshall, F. F.; Petros, J. A. Human beta-defensin-1, a potential chromosome 8p tumor suppressor: control of transcription and induction of apoptosis in renal cell carcinoma Cancer Res. 2006, 66 (17) 8542-9
-
(2006)
Cancer Res.
, vol.66
, Issue.17
, pp. 8542-8549
-
-
Sun, C.Q.1
Arnold, R.2
Fernandez-Golarz, C.3
Parrish, A.B.4
Almekinder, T.5
He, J.6
Ho, S.M.7
Svoboda, P.8
Pohl, J.9
Marshall, F.F.10
Petros, J.A.11
-
40
-
-
0037391009
-
Cancer-specific loss of beta-defensin 1 in renal and prostatic carcinomas
-
Donald, C. D.; Sun, C. Q.; Lim, S. D.; Macoska, J.; Cohen, C.; Amin, M. B.; Young, A. N.; Ganz, T. A.; Marshall, F. F.; Petros, J. A. Cancer-specific loss of beta-defensin 1 in renal and prostatic carcinomas Lab. Invest. 2003, 83 (4) 501-5
-
(2003)
Lab. Invest.
, vol.83
, Issue.4
, pp. 501-505
-
-
Donald, C.D.1
Sun, C.Q.2
Lim, S.D.3
Macoska, J.4
Cohen, C.5
Amin, M.B.6
Young, A.N.7
Ganz, T.A.8
Marshall, F.F.9
Petros, J.A.10
-
41
-
-
84873458168
-
Deep sequencing in cancer research
-
Yoshida, K.; Sanada, M.; Ogawa, S. Deep sequencing in cancer research Jpn. J. Clin. Oncol. 2013, 43 (2) 110-5
-
(2013)
Jpn. J. Clin. Oncol.
, vol.43
, Issue.2
, pp. 110-115
-
-
Yoshida, K.1
Sanada, M.2
Ogawa, S.3
-
42
-
-
84891761087
-
Laminin-5 and type i collagen promote adhesion and osteogenic differentiation of animal serum-free expanded human mesenchymal stromal cells
-
Mittag, F.; Falkenberg, E. M.; Janczyk, A.; Gotze, M.; Felka, T.; Aicher, W. K.; Kluba, T. Laminin-5 and type I collagen promote adhesion and osteogenic differentiation of animal serum-free expanded human mesenchymal stromal cells Orthop. Res. Rev. 2012, 4 (4) e36
-
(2012)
Orthop. Res. Rev.
, vol.4
, Issue.4
, pp. 36
-
-
Mittag, F.1
Falkenberg, E.M.2
Janczyk, A.3
Gotze, M.4
Felka, T.5
Aicher, W.K.6
Kluba, T.7
-
43
-
-
84877269179
-
Laminin-5 is a biomarker of invasiveness in cervical adenocarcinoma
-
Imura, J.; Uchida, Y.; Nomoto, K.; Ichikawa, K.; Tomita, S.; Iijima, T.; Fujimori, T. Laminin-5 is a biomarker of invasiveness in cervical adenocarcinoma Diagn. Pathol. 2012, 7, 105
-
(2012)
Diagn. Pathol.
, vol.7
, pp. 105
-
-
Imura, J.1
Uchida, Y.2
Nomoto, K.3
Ichikawa, K.4
Tomita, S.5
Iijima, T.6
Fujimori, T.7
-
44
-
-
84862655352
-
Combinations of laminin 5 with PTEN, p-EGFR and p-Akt define a group of distinct molecular subsets indicative of poor prognosis in patients with non-small cell lung cancer
-
An, S. J.; Lin, Q. X.; Chen, Z. H.; Su, J.; Cheng, H.; Xie, Z.; Zhang, X. C.; Zhou, H. Y.; Huang, Y.; Chen, S. L.; Guo, W. B.; Wu, Y. L. Combinations of laminin 5 with PTEN, p-EGFR and p-Akt define a group of distinct molecular subsets indicative of poor prognosis in patients with non-small cell lung cancer Exp. Ther. Med. 2012, 4 (2) 226-230
-
(2012)
Exp. Ther. Med.
, vol.4
, Issue.2
, pp. 226-230
-
-
An, S.J.1
Lin, Q.X.2
Chen, Z.H.3
Su, J.4
Cheng, H.5
Xie, Z.6
Zhang, X.C.7
Zhou, H.Y.8
Huang, Y.9
Chen, S.L.10
Guo, W.B.11
Wu, Y.L.12
-
45
-
-
80052432136
-
Expression of laminin 5-gamma2 chain in cutaneous squamous cell carcinoma and its role in tumour invasion
-
Hamasaki, H.; Koga, K.; Aoki, M.; Hamasaki, M.; Koshikawa, N.; Seiki, M.; Iwasaki, H.; Nakayama, J.; Nabeshima, K. Expression of laminin 5-gamma2 chain in cutaneous squamous cell carcinoma and its role in tumour invasion Br. J. Cancer 2011, 105 (6) 824-32
-
(2011)
Br. J. Cancer
, vol.105
, Issue.6
, pp. 824-832
-
-
Hamasaki, H.1
Koga, K.2
Aoki, M.3
Hamasaki, M.4
Koshikawa, N.5
Seiki, M.6
Iwasaki, H.7
Nakayama, J.8
Nabeshima, K.9
-
46
-
-
79956212625
-
Hepatic stellate cells stimulate HCC cell migration via laminin-5 production
-
Santamato, A.; Fransvea, E.; Dituri, F.; Caligiuri, A.; Quaranta, M.; Niimi, T.; Pinzani, M.; Antonaci, S.; Giannelli, G. Hepatic stellate cells stimulate HCC cell migration via laminin-5 production Clin. Sci. 2011, 121 (4) 159-68
-
(2011)
Clin. Sci.
, vol.121
, Issue.4
, pp. 159-168
-
-
Santamato, A.1
Fransvea, E.2
Dituri, F.3
Caligiuri, A.4
Quaranta, M.5
Niimi, T.6
Pinzani, M.7
Antonaci, S.8
Giannelli, G.9
-
47
-
-
65549119715
-
Motility induction in breast carcinoma by mammary epithelial laminin 332 (laminin 5)
-
Carpenter, P. M.; Dao, A. V.; Arain, Z. S.; Chang, M. K.; Nguyen, H. P.; Arain, S.; Wang-Rodriguez, J.; Kwon, S. Y.; Wilczynski, S. P. Motility induction in breast carcinoma by mammary epithelial laminin 332 (laminin 5) Mol. Cancer Res. 2009, 7 (4) 462-75
-
(2009)
Mol. Cancer Res.
, vol.7
, Issue.4
, pp. 462-475
-
-
Carpenter, P.M.1
Dao, A.V.2
Arain, Z.S.3
Chang, M.K.4
Nguyen, H.P.5
Arain, S.6
Wang-Rodriguez, J.7
Kwon, S.Y.8
Wilczynski, S.P.9
-
48
-
-
22544457600
-
Death inducer obliterator protein 1 in the context of DNA regulation. Sequence analyses of distant homologues point to a novel functional role
-
Rojas, A. M.; Sanchez-Pulido, L.; Futterer, A.; van Wely, K. H.; Martinez, A. C.; Valencia, A. Death inducer obliterator protein 1 in the context of DNA regulation. Sequence analyses of distant homologues point to a novel functional role FEBS J. 2005, 272 (14) 3505-11
-
(2005)
FEBS J.
, vol.272
, Issue.14
, pp. 3505-3511
-
-
Rojas, A.M.1
Sanchez-Pulido, L.2
Futterer, A.3
Van Wely, K.H.4
Martinez, A.C.5
Valencia, A.6
-
49
-
-
84874113432
-
Death inducer-obliterator 1 (Dido1) is a BMP target gene and promotes BMP-induced melanoma progression
-
Braig, S.; Bosserhoff, A. K. Death inducer-obliterator 1 (Dido1) is a BMP target gene and promotes BMP-induced melanoma progression Oncogene 2013, 32 (7) 837-48
-
(2013)
Oncogene
, vol.32
, Issue.7
, pp. 837-848
-
-
Braig, S.1
Bosserhoff, A.K.2
|