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Volumn 13, Issue 1, 2014, Pages 200-211

Omics evidence: Single nucleotide variants transmissions on chromosome 20 in liver cancer cell lines

(34)  Wang, Quanhui a,b   Wen, Bo b   Wang, Tong c   Xu, Zhongwei d   Yin, Xuefei e   Xu, Shaohang b   Ren, Zhe b   Hou, Guixue b   Zhou, Ruo b   Zhao, Haiyi b   Zi, Jin b   Zhang, Shenyan b   Gao, Huan b   Lou, Xiaomin a,b   Sun, Haidan a,b   Feng, Qiang b   Chang, Cheng d   Qin, Peibin d   Zhang, Chengpu d   Li, Ning d   more..


Author keywords

Chromosome; mutation; Proteome; transcriptome; translatome

Indexed keywords

MESSENGER RNA; TRANSCRIPTOME;

EID: 84891799287     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr400899b     Document Type: Article
Times cited : (14)

References (49)
  • 1
    • 84869065150 scopus 로고    scopus 로고
    • Chromothripsis: Chromosomes in crisis
    • Jones, M. J.; Jallepalli, P. V. Chromothripsis: chromosomes in crisis Dev. Cell 2012, 23 (5) 908-17
    • (2012) Dev. Cell , vol.23 , Issue.5 , pp. 908-917
    • Jones, M.J.1    Jallepalli, P.V.2
  • 4
    • 26944467118 scopus 로고    scopus 로고
    • Deletion at chromosome band 20p12.1 in colorectal cancer revealed by high resolution array comparative genomic hybridization
    • Davison, E. J.; Tarpey, P. S.; Fiegler, H.; Tomlinson, I. P.; Carter, N. P. Deletion at chromosome band 20p12.1 in colorectal cancer revealed by high resolution array comparative genomic hybridization Genes, Chromosomes Cancer 2005, 44 (4) 384-91
    • (2005) Genes, Chromosomes Cancer , vol.44 , Issue.4 , pp. 384-391
    • Davison, E.J.1    Tarpey, P.S.2    Fiegler, H.3    Tomlinson, I.P.4    Carter, N.P.5
  • 6
    • 33745700257 scopus 로고    scopus 로고
    • Pancreatic adenocarcinoma - Genetic portrait from chromosomes to microarrays
    • Karhu, R.; Mahlamaki, E.; Kallioniemi, A. Pancreatic adenocarcinoma - genetic portrait from chromosomes to microarrays Genes, Chromosomes Cancer 2006, 45 (8) 721-30
    • (2006) Genes, Chromosomes Cancer , vol.45 , Issue.8 , pp. 721-730
    • Karhu, R.1    Mahlamaki, E.2    Kallioniemi, A.3
  • 9
    • 84856622604 scopus 로고    scopus 로고
    • Critical amino acid residues in proteins: A BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations
    • Ndegwa, N.; Cote, R. G.; Ovelleiro, D.; D'Eustachio, P.; Hermjakob, H.; Vizcaino, J. A.; Croft, D. Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations Database 2011, 2011, bar047
    • (2011) Database , vol.2011 , pp. 047
    • Ndegwa, N.1    Cote, R.G.2    Ovelleiro, D.3    D'Eustachio, P.4    Hermjakob, H.5    Vizcaino, J.A.6    Croft, D.7
  • 11
    • 84880063629 scopus 로고    scopus 로고
    • From human genome to cancer genome: The first decade
    • Wheeler, D. A.; Wang, L. From human genome to cancer genome: The first decade Genome Res. 2013, 23 (7) 1054-62
    • (2013) Genome Res. , vol.23 , Issue.7 , pp. 1054-1062
    • Wheeler, D.A.1    Wang, L.2
  • 12
    • 84875159380 scopus 로고    scopus 로고
    • Pancreatic cancer genomics: Insights and opportunities for clinical translation
    • Makohon-Moore, A.; Brosnan, J. A.; Iacobuzio-Donahue, C. A. Pancreatic cancer genomics: insights and opportunities for clinical translation Genome Med. 2013, 5 (3) 26
    • (2013) Genome Med. , vol.5 , Issue.3 , pp. 26
    • Makohon-Moore, A.1    Brosnan, J.A.2    Iacobuzio-Donahue, C.A.3
  • 13
    • 84880452562 scopus 로고    scopus 로고
    • Genomics-driven oncology: Framework for an emerging paradigm
    • Garraway, L. A. Genomics-driven oncology: framework for an emerging paradigm J. Clin. Oncol. 2013, 31 (15) 1806-14
    • (2013) J. Clin. Oncol. , vol.31 , Issue.15 , pp. 1806-1814
    • Garraway, L.A.1
  • 16
    • 84872050090 scopus 로고    scopus 로고
    • Translating genomics to the clinic: Implications of cancer heterogeneity
    • Samuel, N.; Hudson, T. J. Translating genomics to the clinic: implications of cancer heterogeneity Clin. Chem. 2013, 59 (1) 127-37
    • (2013) Clin. Chem. , vol.59 , Issue.1 , pp. 127-137
    • Samuel, N.1    Hudson, T.J.2
  • 18
    • 84879639724 scopus 로고    scopus 로고
    • Integrative ″omics″-approach discovers dynamic and regulatory features of bacterial stress responses
    • Berghoff, B. A.; Konzer, A.; Mank, N. N.; Looso, M.; Rische, T.; Forstner, K. U.; Kruger, M.; Klug, G. Integrative ″omics″-approach discovers dynamic and regulatory features of bacterial stress responses PLoS Genet. 2013, 9 (6) e1003576
    • (2013) PLoS Genet. , vol.9 , Issue.6 , pp. 1003576
    • Berghoff, B.A.1    Konzer, A.2    Mank, N.N.3    Looso, M.4    Rische, T.5    Forstner, K.U.6    Kruger, M.7    Klug, G.8
  • 20
    • 84877285213 scopus 로고    scopus 로고
    • Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific
    • Wang, T.; Cui, Y.; Jin, J.; Guo, J.; Wang, G.; Yin, X.; He, Q. Y.; Zhang, G. Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific Nucleic Acids Res. 2013, 41 (9) 4743-54
    • (2013) Nucleic Acids Res. , vol.41 , Issue.9 , pp. 4743-4754
    • Wang, T.1    Cui, Y.2    Jin, J.3    Guo, J.4    Wang, G.5    Yin, X.6    He, Q.Y.7    Zhang, G.8
  • 23
    • 84863890852 scopus 로고    scopus 로고
    • Mulberry Leaf Polyphenol Extract Induced Apoptosis Involving Regulation of Adenosine Monophosphate-Activated Protein Kinase/Fatty Acid Synthase in a p53-Negative Hepatocellular Carcinoma Cell
    • Yang, T. P.; Lee, H. J.; Ou, T. T.; Chang, Y. J.; Wang, C. J. Mulberry Leaf Polyphenol Extract Induced Apoptosis Involving Regulation of Adenosine Monophosphate-Activated Protein Kinase/Fatty Acid Synthase in a p53-Negative Hepatocellular Carcinoma Cell J. Agric. Food Chem. 2012, 60 (27) 6891-6898
    • (2012) J. Agric. Food Chem. , vol.60 , Issue.27 , pp. 6891-6898
    • Yang, T.P.1    Lee, H.J.2    Ou, T.T.3    Chang, Y.J.4    Wang, C.J.5
  • 24
    • 80053652269 scopus 로고    scopus 로고
    • Benzo(a)pyrene-induced mitochondrial dysfunction and cell death in p53-null Hep3B cells
    • Jiang, Y.; Zhou, X.; Chen, X.; Yang, G.; Wang, Q.; Rao, K.; Xiong, W.; Yuan, J. Benzo(a)pyrene-induced mitochondrial dysfunction and cell death in p53-null Hep3B cells Mutat. Res. 2011, 726 (1) 75-83
    • (2011) Mutat. Res. , vol.726 , Issue.1 , pp. 75-83
    • Jiang, Y.1    Zhou, X.2    Chen, X.3    Yang, G.4    Wang, Q.5    Rao, K.6    Xiong, W.7    Yuan, J.8
  • 25
    • 4344589523 scopus 로고    scopus 로고
    • Stepwise metastatic human hepatocellular carcinoma cell model system with multiple metastatic potentials established through consecutive in vivo selection and studies on metastatic characteristics
    • Li, Y.; Tian, B.; Yang, J.; Zhao, L.; Wu, X.; Ye, S. L.; Liu, Y. K.; Tang, Z. Y. Stepwise metastatic human hepatocellular carcinoma cell model system with multiple metastatic potentials established through consecutive in vivo selection and studies on metastatic characteristics J. Cancer Res. Clin. Oncol. 2004, 130 (8) 460-8
    • (2004) J. Cancer Res. Clin. Oncol. , vol.130 , Issue.8 , pp. 460-468
    • Li, Y.1    Tian, B.2    Yang, J.3    Zhao, L.4    Wu, X.5    Ye, S.L.6    Liu, Y.K.7    Tang, Z.Y.8
  • 26
    • 84862227622 scopus 로고    scopus 로고
    • FANSe: An accurate algorithm for quantitative mapping of large scale sequencing reads
    • Zhang, G.; Fedyunin, I.; Kirchner, S.; Xiao, C.; Valleriani, A.; Ignatova, Z. FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads Nucleic Acids Res. 2012, 40 (11) e83
    • (2012) Nucleic Acids Res. , vol.40 , Issue.11 , pp. 83
    • Zhang, G.1    Fedyunin, I.2    Kirchner, S.3    Xiao, C.4    Valleriani, A.5    Ignatova, Z.6
  • 27
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C.; Pachter, L.; Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq Bioinformatics 2009, 25 (9) 1105-11
    • (2009) Bioinformatics , vol.25 , Issue.9 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 29
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang, K.; Li, M.; Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Nucleic Acids Res. 2010, 38 (16) e164
    • (2010) Nucleic Acids Res. , vol.38 , Issue.16 , pp. 164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 31
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M. D.; McCarthy, D. J.; Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data Bioinformatics 2010, 26 (1) 139-40
    • (2010) Bioinformatics , vol.26 , Issue.1 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 32
    • 54949129419 scopus 로고    scopus 로고
    • ProteoWizard: Open source software for rapid proteomics tools development
    • Kessner, D.; Chambers, M.; Burke, R.; Agus, D.; Mallick, P. ProteoWizard: open source software for rapid proteomics tools development Bioinformatics 2008, 24 (21) 2534-6
    • (2008) Bioinformatics , vol.24 , Issue.21 , pp. 2534-2536
    • Kessner, D.1    Chambers, M.2    Burke, R.3    Agus, D.4    Mallick, P.5
  • 38
    • 84891781300 scopus 로고    scopus 로고
    • Gene therapy with beta defensin-2 induces anti-tumor immunity and enhances local anti-tumor effects
    • 10.1089/hum.2013.161
    • Li, D.; Wang, W.; Shi, H.; Fu, Y. J.; Chen, X.; Chen, X.; Liu, Y. T.; Kan, B.; Wang, Y. Gene therapy with beta defensin-2 induces anti-tumor immunity and enhances local anti-tumor effects Hum. Gene Ther. 2013, 10.1089/hum.2013.161
    • (2013) Hum. Gene Ther.
    • Li, D.1    Wang, W.2    Shi, H.3    Fu, Y.J.4    Chen, X.5    Chen, X.6    Liu, Y.T.7    Kan, B.8    Wang, Y.9
  • 42
    • 84891761087 scopus 로고    scopus 로고
    • Laminin-5 and type i collagen promote adhesion and osteogenic differentiation of animal serum-free expanded human mesenchymal stromal cells
    • Mittag, F.; Falkenberg, E. M.; Janczyk, A.; Gotze, M.; Felka, T.; Aicher, W. K.; Kluba, T. Laminin-5 and type I collagen promote adhesion and osteogenic differentiation of animal serum-free expanded human mesenchymal stromal cells Orthop. Res. Rev. 2012, 4 (4) e36
    • (2012) Orthop. Res. Rev. , vol.4 , Issue.4 , pp. 36
    • Mittag, F.1    Falkenberg, E.M.2    Janczyk, A.3    Gotze, M.4    Felka, T.5    Aicher, W.K.6    Kluba, T.7
  • 44
    • 84862655352 scopus 로고    scopus 로고
    • Combinations of laminin 5 with PTEN, p-EGFR and p-Akt define a group of distinct molecular subsets indicative of poor prognosis in patients with non-small cell lung cancer
    • An, S. J.; Lin, Q. X.; Chen, Z. H.; Su, J.; Cheng, H.; Xie, Z.; Zhang, X. C.; Zhou, H. Y.; Huang, Y.; Chen, S. L.; Guo, W. B.; Wu, Y. L. Combinations of laminin 5 with PTEN, p-EGFR and p-Akt define a group of distinct molecular subsets indicative of poor prognosis in patients with non-small cell lung cancer Exp. Ther. Med. 2012, 4 (2) 226-230
    • (2012) Exp. Ther. Med. , vol.4 , Issue.2 , pp. 226-230
    • An, S.J.1    Lin, Q.X.2    Chen, Z.H.3    Su, J.4    Cheng, H.5    Xie, Z.6    Zhang, X.C.7    Zhou, H.Y.8    Huang, Y.9    Chen, S.L.10    Guo, W.B.11    Wu, Y.L.12
  • 48
    • 22544457600 scopus 로고    scopus 로고
    • Death inducer obliterator protein 1 in the context of DNA regulation. Sequence analyses of distant homologues point to a novel functional role
    • Rojas, A. M.; Sanchez-Pulido, L.; Futterer, A.; van Wely, K. H.; Martinez, A. C.; Valencia, A. Death inducer obliterator protein 1 in the context of DNA regulation. Sequence analyses of distant homologues point to a novel functional role FEBS J. 2005, 272 (14) 3505-11
    • (2005) FEBS J. , vol.272 , Issue.14 , pp. 3505-3511
    • Rojas, A.M.1    Sanchez-Pulido, L.2    Futterer, A.3    Van Wely, K.H.4    Martinez, A.C.5    Valencia, A.6
  • 49
    • 84874113432 scopus 로고    scopus 로고
    • Death inducer-obliterator 1 (Dido1) is a BMP target gene and promotes BMP-induced melanoma progression
    • Braig, S.; Bosserhoff, A. K. Death inducer-obliterator 1 (Dido1) is a BMP target gene and promotes BMP-induced melanoma progression Oncogene 2013, 32 (7) 837-48
    • (2013) Oncogene , vol.32 , Issue.7 , pp. 837-848
    • Braig, S.1    Bosserhoff, A.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.