-
1
-
-
84859622404
-
Standard guidelines for the Chromosome-centric Human Proteome Project
-
Paik, Y. K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; Marko-Varga, G.; Aebersold, R.; Bairoch, A.; Yamamoto, T.; Legrain, P.; Lee, H. J.; Na, K.; Jeong, S. K.; He, F.; Binz, P. A.; Nishimura, T.; Keown, P.; Baker, M. S.; Yoo, J. S.; Garin, J.; Archakov, A.; Bergeron, J.; Salekdeh, G. H.; Hancock, W. S. Standard guidelines for the Chromosome-centric Human Proteome Project. J. Proteome Res. 2012, 11 (4), 2005-13.
-
(2012)
J. Proteome Res.
, vol.11
, Issue.4
, pp. 2005-2013
-
-
Paik, Y.K.1
Omenn, G.S.2
Uhlen, M.3
Hanash, S.4
Marko-Varga, G.5
Aebersold, R.6
Bairoch, A.7
Yamamoto, T.8
Legrain, P.9
Lee, H.J.10
Na, K.11
Jeong, S.K.12
He, F.13
Binz, P.A.14
Nishimura, T.15
Keown, P.16
Baker, M.S.17
Yoo, J.S.18
Garin, J.19
Archakov, A.20
Bergeron, J.21
Salekdeh, G.H.22
Hancock, W.S.23
more..
-
2
-
-
84863229647
-
The Chromosomecentric Human Proteome Project for cataloging proteins encoded in the genome
-
Paik, Y. K.; Jeong, S. K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; Cho, S. Y.; Lee, H. J.; Na, K.; Choi, E. Y.; Yan, F.; Zhang, F.; Zhang, Y.; Snyder, M.; Cheng, Y.; Chen, R.; Marko-Varga, G.; Deutsch, E. W.; Kim, H.; Kwon, J. Y.; Aebersold, R.; Bairoch, A.; Taylor, A. D.; Kim, K. Y.; Lee, E. Y.; Hochstrasser, D.; Legrain, P.; Hancock, W. S. The Chromosomecentric Human Proteome Project for cataloging proteins encoded in the genome. Nat. Biotechnol. 2012, 30 (3), 221-3.
-
(2012)
Nat. Biotechnol.
, vol.30
, Issue.3
, pp. 221-223
-
-
Paik, Y.K.1
Jeong, S.K.2
Omenn, G.S.3
Uhlen, M.4
Hanash, S.5
Cho, S.Y.6
Lee, H.J.7
Na, K.8
Choi, E.Y.9
Yan, F.10
Zhang, F.11
Zhang, Y.12
Snyder, M.13
Cheng, Y.14
Chen, R.15
Marko-Varga, G.16
Deutsch, E.W.17
Kim, H.18
Kwon, J.Y.19
Aebersold, R.20
Bairoch, A.21
Taylor, A.D.22
Kim, K.Y.23
Lee, E.Y.24
Hochstrasser, D.25
Legrain, P.26
Hancock, W.S.27
more..
-
3
-
-
0035924324
-
The DNA sequence and comparative analysis of human chromosome 20
-
Deloukas, P.; Matthews, L. H.; Ashurst, J.; Burton, J.; Gilbert, J. G.; Jones, M.; Stavrides, G.; Almeida, J. P.; Babbage, A. K.; Bagguley, C. L.; Bailey, J.; Barlow, K. F.; Bates, K. N.; Beard, L. M.; Beare, D. M.; Beasley, O. P.; Bird, C. P.; Blakey, S. E.; Bridgeman, A. M.; Brown, A. J.; Buck, D.; Burrill, W.; Butler, A. P.; Carder, C.; Carter, N. P.; Chapman, J. C.; Clamp, M.; Clark, G.; Clark, L. N.; Clark, S. Y.; Clee, C. M.; Clegg, S.; Cobley, V. E.; Collier, R. E.; Connor, R.; Corby, N. R.; Coulson, A.; Coville, G. J.; Deadman, R.; Dhami, P.; Dunn, M.; Ellington, A. G.; Frankland, J. A.; Fraser, A.; French, L.; Garner, P.; Grafham, D. V.; Griffiths, C.; Griffiths, M. N.; Gwilliam, R.; Hall, R. E.; Hammond, S.; Harley, J. L.; Heath, P. D.; Ho, S.; Holden, J. L.; Howden, P. J.; Huckle, E.; Hunt, A. R.; Hunt, S. E.; Jekosch, K.; Johnson, C. M.; Johnson, D.; Kay, M. P.; Kimberley, A. M.; King, A.; Knights, A.; Laird, G. K.; Lawlor, S.; Lehvaslaiho, M. H.; Leversha, M.; Lloyd, C.; Lloyd, D. M.; Lovell, J. D.; Marsh, V. L.; Martin, S. L.; McConnachie, L. J.; McLay, K.; McMurray, A. A.; Milne, S.; Mistry, D.; Moore, M. J.; Mullikin, J. C.; Nickerson, T.; Oliver, K.; Parker, A.; Patel, R.; Pearce, T. A.; Peck, A. I.; Phillimore, B. J.; Prathalingam, S. R.; Plumb, R. W.; Ramsay, H.; Rice, C. M.; Ross, M. T.; Scott, C. E.; Sehra, H. K.; Shownkeen, R.; Sims, S.; Skuce, C. D.; Smith, M. L.; Soderlund, C.; Steward, C. A.; Sulston, J. E.; Swann, M.; Sycamore, N.; Taylor, R.; Tee, L.; Thomas, D. W.; Thorpe, A.; Tracey, A.; Tromans, A. C.; Vaudin, M.; Wall, M.; Wallis, J. M.; Whitehead, S. L.; Whittaker, P.; Willey, D. L.; Williams, L.; Williams, S. A.; Wilming, L.; Wray, P. W.; Hubbard, T.; Durbin, R. M.; Bentley, D. R.; Beck, S.; Rogers, J. The DNA sequence and comparative analysis of human chromosome 20. Nature 2001, 414 (6866), 865-71.
-
(2001)
Nature
, vol.414
, Issue.6866
, pp. 865-871
-
-
Deloukas, P.1
Matthews, L.H.2
Ashurst, J.3
Burton, J.4
Gilbert, J.G.5
Jones, M.6
Stavrides, G.7
Almeida, J.P.8
Babbage, A.K.9
Bagguley, C.L.10
Bailey, J.11
Barlow, K.F.12
Bates, K.N.13
Beard, L.M.14
Beare, D.M.15
Beasley, O.P.16
Bird, C.P.17
Blakey, S.E.18
Bridgeman, A.M.19
Brown, A.J.20
Buck, D.21
Burrill, W.22
Butler, A.P.23
Carder, C.24
Carter, N.P.25
Chapman, J.C.26
Clamp, M.27
Clark, G.28
Clark, L.N.29
Clark, S.Y.30
Clee, C.M.31
Clegg, S.32
Cobley, V.E.33
Collier, R.E.34
Connor, R.35
Corby, N.R.36
Coulson, A.37
Coville, G.J.38
Deadman, R.39
Dhami, P.40
Dunn, M.41
Ellington, A.G.42
Frankland, J.A.43
Fraser, A.44
French, L.45
Garner, P.46
Grafham, D.V.47
Griffiths, C.48
Griffiths, M.N.49
Gwilliam, R.50
Hall, R.E.51
Hammond, S.52
Harley, J.L.53
Heath, P.D.54
Ho, S.55
Holden, J.L.56
Howden, P.J.57
Huckle, E.58
Hunt, A.R.59
Hunt, S.E.60
Jekosch, K.61
Johnson, C.M.62
Johnson, D.63
Kay, M.P.64
Kimberley, A.M.65
King, A.66
Knights, A.67
Laird, G.K.68
Lawlor, S.69
Lehvaslaiho, M.H.70
Leversha, M.71
Lloyd, C.72
Lloyd, D.M.73
Lovell, J.D.74
Marsh, V.L.75
Martin, S.L.76
McConnachie, L.J.77
McLay, K.78
McMurray, A.A.79
Milne, S.80
Mistry, D.81
Moore, M.J.82
Mullikin, J.C.83
Nickerson, T.84
Oliver, K.85
Parker, A.86
Patel, R.87
Pearce, T.A.88
Peck, A.I.89
Phillimore, B.J.90
Prathalingam, S.R.91
Plumb, R.W.92
Ramsay, H.93
Rice, C.M.94
Ross, M.T.95
Scott, C.E.96
Sehra, H.K.97
Shownkeen, R.98
Sims, S.99
more..
-
4
-
-
70349269042
-
High resolution analysis of DNA copy-number aberrations of chromosomes 8, 13, and 20 in gastric cancers
-
Buffart, T. E.; van Grieken, N. C.; Tijssen, M.; Coffa, J.; Ylstra, B.; Grabsch, H. I.; van de Velde, C. J.; Carvalho, B.; Meijer, G. A. High resolution analysis of DNA copy-number aberrations of chromosomes 8, 13, and 20 in gastric cancers. Virchows Arch. 2009, 455 (3), 213-23.
-
(2009)
Virchows Arch.
, vol.455
, Issue.3
, pp. 213-223
-
-
Buffart, T.E.1
Van Grieken, N.C.2
Tijssen, M.3
Coffa, J.4
Ylstra, B.5
Grabsch, H.I.6
Van De Velde, C.J.7
Carvalho, B.8
Meijer, G.A.9
-
5
-
-
26944467118
-
Deletion at chromosome band 20p12.1 in colorectal cancer revealed by high resolution array comparative genomic hybridization
-
Davison, E. J.; Tarpey, P. S.; Fiegler, H.; Tomlinson, I. P.; Carter, N. P. Deletion at chromosome band 20p12.1 in colorectal cancer revealed by high resolution array comparative genomic hybridization. Genes Chromosomes Cancer 2005, 44 (4), 384-91.
-
(2005)
Genes Chromosomes Cancer
, vol.44
, Issue.4
, pp. 384-391
-
-
Davison, E.J.1
Tarpey, P.S.2
Fiegler, H.3
Tomlinson, I.P.4
Carter, N.P.5
-
6
-
-
0037738856
-
Genome amplification of chromosome 20 in breast cancer
-
Hodgson, J. G.; Chin, K.; Collins, C.; Gray, J. W. Genome amplification of chromosome 20 in breast cancer. Breast Cancer Res. Treat. 2003, 78 (3), 337-45.
-
(2003)
Breast Cancer Res. Treat.
, vol.78
, Issue.3
, pp. 337-345
-
-
Hodgson, J.G.1
Chin, K.2
Collins, C.3
Gray, J.W.4
-
7
-
-
33745700257
-
Pancreatic adenocarcinoma-genetic portrait from chromosomes to microarrays
-
Karhu, R.; Mahlamaki, E.; Kallioniemi, A. Pancreatic adenocarcinoma- genetic portrait from chromosomes to microarrays. Genes Chromosomes Cancer 2006, 45 (8), 721-30.
-
(2006)
Genes Chromosomes Cancer
, vol.45
, Issue.8
, pp. 721-730
-
-
Karhu, R.1
Mahlamaki, E.2
Kallioniemi, A.3
-
8
-
-
0035135616
-
Molecular cytogenetic analysis of prostatic adenocarcinomas from screening studies: Early cancers may contain aggressive genetic features
-
Alers, J. C.; Krijtenburg, P. J.; Vis, A. N.; Hoedemaeker, R. F.; Wildhagen, M. F.; Hop, W. C.; van Der Kwast, T. T.; Schroder, F. H.; Tanke, H. J.; van Dekken, H. Molecular cytogenetic analysis of prostatic adenocarcinomas from screening studies: early cancers may contain aggressive genetic features. Am. J. Pathol. 2001, 158 (2), 399-406.
-
(2001)
Am. J. Pathol.
, vol.158
, Issue.2
, pp. 399-406
-
-
Alers, J.C.1
Krijtenburg, P.J.2
Vis, A.N.3
Hoedemaeker, R.F.4
Wildhagen, M.F.5
Hop, W.C.6
Van Der Kwast, T.T.7
Schroder, F.H.8
Tanke, H.J.9
Van Dekken, H.10
-
9
-
-
79551629826
-
Amplification of the 20q chromosomal arm occurs early in tumorigenic transformation and may initiate cancer
-
Tabach, Y.; Kogan-Sakin, I.; Buganim, Y.; Solomon, H.; Goldfinger, N.; Hovland, R.; Ke, X. S.; Oyan, A. M.; Kalland, K. H.; Rotter, V.; Domany, E. Amplification of the 20q chromosomal arm occurs early in tumorigenic transformation and may initiate cancer. PLoS One 2011, 6 (1), e14632.
-
(2011)
PLoS One
, vol.6
, Issue.1
-
-
Tabach, Y.1
Kogan-Sakin, I.2
Buganim, Y.3
Solomon, H.4
Goldfinger, N.5
Hovland, R.6
Ke, X.S.7
Oyan, A.M.8
Kalland, K.H.9
Rotter, V.10
Domany, E.11
-
10
-
-
0037249834
-
CSE1L/CAS: Its role in proliferation and apoptosis
-
Behrens, P.; Brinkmann, U.; Wellmann, A. CSE1L/CAS: its role in proliferation and apoptosis. Apoptosis 2003, 8 (1), 39-44.
-
(2003)
Apoptosis
, vol.8
, Issue.1
, pp. 39-44
-
-
Behrens, P.1
Brinkmann, U.2
Wellmann, A.3
-
11
-
-
0035347312
-
High expression of the proliferation and apoptosis associated CSE1L/CAS gene in hepatitis and liver neoplasms: Correlation with tumor progression
-
Wellmann, A.; Flemming, P.; Behrens, P.; Wuppermann, K.; Lang, H.; Oldhafer, K.; Pastan, I.; Brinkmann, U. High expression of the proliferation and apoptosis associated CSE1L/CAS gene in hepatitis and liver neoplasms: correlation with tumor progression. Int. J. Mol. Med. 2001, 7 (5), 489-94.
-
(2001)
Int. J. Mol. Med.
, vol.7
, Issue.5
, pp. 489-494
-
-
Wellmann, A.1
Flemming, P.2
Behrens, P.3
Wuppermann, K.4
Lang, H.5
Oldhafer, K.6
Pastan, I.7
Brinkmann, U.8
-
12
-
-
0036805363
-
Loss of heterozygosity of chromosome 20 in sporadic colorectal cancer
-
Peng, Z.; Zhou, C.; Zhang, F.; Ling, Y.; Tang, H.; Bai, S.; Liu, W.; Qiu, G.; He, L. Loss of heterozygosity of chromosome 20 in sporadic colorectal cancer. Chin. Med. J. (Engl.) 2002, 115 (10), 1529-32.
-
(2002)
Chin. Med. J. (Engl.)
, vol.115
, Issue.10
, pp. 1529-1532
-
-
Peng, Z.1
Zhou, C.2
Zhang, F.3
Ling, Y.4
Tang, H.5
Bai, S.6
Liu, W.7
Qiu, G.8
He, L.9
-
13
-
-
84864436663
-
A comprehensive characterization of genome-wide copy number aberrations in colorectal cancer reveals novel oncogenes and patterns of alterations
-
Xie, T.; G, D. A.; Lamb, J. R.; Martin, E.; Wang, K.; Tejpar, S.; Delorenzi, M.; Bosman, F. T.; Roth, A. D.; Yan, P.; Bougel, S.; Di Narzo, A. F.; Popovici, V.; Budinska, E.; Mao, M.; Weinrich, S. L.; Rejto, P. A.; Hodgson, J. G. A comprehensive characterization of genome-wide copy number aberrations in colorectal cancer reveals novel oncogenes and patterns of alterations. PLoS One 2012, 7 (7), e42001.
-
(2012)
PLoS One
, vol.7
, Issue.7
-
-
Xie, T.1
A, G.D.2
Lamb, J.R.3
Martin, E.4
Wang, K.5
Tejpar, S.6
Delorenzi, M.7
Bosman, F.T.8
Roth, A.D.9
Yan, P.10
Bougel, S.11
Di Narzo, A.F.12
Popovici, V.13
Budinska, E.14
Mao, M.15
Weinrich, S.L.16
Rejto, P.A.17
Hodgson, J.G.18
-
14
-
-
79960179572
-
The human proteome project: Current state and future direction
-
Legrain, P.; Aebersold, R.; Archakov, A.; Bairoch, A.; Bala, K.; Beretta, L.; Bergeron, J.; Borchers, C. H.; Corthals, G. L.; Costello, C. E.; Deutsch, E. W.; Domon, B.; Hancock, W.; He, F.; Hochstrasser, D.; Marko-Varga, G.; Salekdeh, G. H.; Sechi, S.; Snyder, M.; Srivastava, S.; Uhlen, M.; Wu, C. H.; Yamamoto, T.; Paik, Y. K.; Omenn, G. S. The human proteome project: current state and future direction. Mol. Cell. Proteomics 2011, 10 (7), M111 009993.
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.7
-
-
Legrain, P.1
Aebersold, R.2
Archakov, A.3
Bairoch, A.4
Bala, K.5
Beretta, L.6
Bergeron, J.7
Borchers, C.H.8
Corthals, G.L.9
Costello, C.E.10
Deutsch, E.W.11
Domon, B.12
Hancock, W.13
He, F.14
Hochstrasser, D.15
Marko-Varga, G.16
Salekdeh, G.H.17
Sechi, S.18
Snyder, M.19
Srivastava, S.20
Uhlen, M.21
Wu, C.H.22
Yamamoto, T.23
Paik, Y.K.24
Omenn, G.S.25
more..
-
15
-
-
84857938446
-
Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins
-
Geiger, T.; Wehner, A.; Schaab, C.; Cox, J.; Mann, M. Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins. Mol. Cell. Proteomics 2012, 11 (3), M111 014050.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.3
-
-
Geiger, T.1
Wehner, A.2
Schaab, C.3
Cox, J.4
Mann, M.5
-
16
-
-
2442436130
-
Affinity proteomics for systematic protein profiling of chromosome 21 gene products in human tissues
-
Agaton, C.; Galli, J.; Hoiden Guthenberg, I.; Janzon, L.; Hansson, M.; Asplund, A.; Brundell, E.; Lindberg, S.; Ruthberg, I.; Wester, K.; Wurtz, D.; Hoog, C.; Lundeberg, J.; Stahl, S.; Ponten, F.; Uhlen, M. Affinity proteomics for systematic protein profiling of chromosome 21 gene products in human tissues. Mol. Cell. Proteomics 2003, 2 (6), 405-14.
-
(2003)
Mol. Cell. Proteomics
, vol.2
, Issue.6
, pp. 405-414
-
-
Agaton, C.1
Galli, J.2
Hoiden Guthenberg, I.3
Janzon, L.4
Hansson, M.5
Asplund, A.6
Brundell, E.7
Lindberg, S.8
Ruthberg, I.9
Wester, K.10
Wurtz, D.11
Hoog, C.12
Lundeberg, J.13
Stahl, S.14
Ponten, F.15
Uhlen, M.16
-
17
-
-
84857963287
-
Antibody-based protein profiling of the human chromosome 21
-
Uhlen, M.; Oksvold, P.; Algenas, C.; Hamsten, C.; Fagerberg, L.; Klevebring, D.; Lundberg, E.; Odeberg, J.; Ponten, F.; Kondo, T.; Sivertsson, A. Antibody-based protein profiling of the human chromosome 21. Mol. Cell. Proteomics 2012, 11 (3), M111 013458.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, Issue.3
-
-
Uhlen, M.1
Oksvold, P.2
Algenas, C.3
Hamsten, C.4
Fagerberg, L.5
Klevebring, D.6
Lundberg, E.7
Odeberg, J.8
Ponten, F.9
Kondo, T.10
Sivertsson, A.11
-
18
-
-
84862902689
-
PepDistiller: A quality control tool to improve the sensitivity and accuracy of peptide identifications in shotgun proteomics
-
Li, N.; Wu, S.; Zhang, C.; Chang, C.; Zhang, J.; Ma, J.; Li, L.; Qian, X.; Xu, P.; Zhu, Y.; He, F. PepDistiller: A quality control tool to improve the sensitivity and accuracy of peptide identifications in shotgun proteomics. Proteomics 2012, 12 (11), 1720-5.
-
(2012)
Proteomics
, vol.12
, Issue.11
, pp. 1720-1725
-
-
Li, N.1
Wu, S.2
Zhang, C.3
Chang, C.4
Zhang, J.5
Ma, J.6
Li, L.7
Qian, X.8
Xu, P.9
Zhu, Y.10
He, F.11
-
19
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J. E.; Gygi, S. P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4 (3), 207-14.
-
(2007)
Nat. Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
20
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhausser, B.; Busse, D.; Li, N.; Dittmar, G.; Schuchhardt, J.; Wolf, J.; Chen, W.; Selbach, M. Global quantification of mammalian gene expression control. Nature 2011, 473 (7347), 337-42.
-
(2011)
Nature
, vol.473
, Issue.7347
, pp. 337-342
-
-
Schwanhausser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
Wolf, J.6
Chen, W.7
Selbach, M.8
-
21
-
-
74049132731
-
Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis
-
Griffin, N. M.; Yu, J.; Long, F.; Oh, P.; Shore, S.; Li, Y.; Koziol, J. A.; Schnitzer, J. E. Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis. Nat. Biotechnol. 2010, 28 (1), 83-9.
-
(2010)
Nat. Biotechnol.
, vol.28
, Issue.1
, pp. 83-89
-
-
Griffin, N.M.1
Yu, J.2
Long, F.3
Oh, P.4
Shore, S.5
Li, Y.6
Koziol, J.A.7
Schnitzer, J.E.8
-
22
-
-
84861142867
-
AMPKalpha modulation in cancer progression: Multilayer integrativeanalysis of the whole transcriptome in Asian gastric cancer
-
Kim, Y. H.; Liang, H.; Liu, X.; Lee, J. S.; Cho, J. Y.; Cheong, J. H.; Kim, H.; Li, M.; Downey, T. J.; Dyer, M. D.; Sun, Y.; Sun, J.; Beasley, E. M.; Chung, H. C.; Noh, S. H.; Weinstein, J. N.; Liu, C. G.; Powis, G. AMPKalpha modulation in cancer progression: multilayer integrativeanalysis of the whole transcriptome in Asian gastric cancer. Cancer Res. 2012, 72 (10), 2512-21.
-
(2012)
Cancer Res.
, vol.72
, Issue.10
, pp. 2512-2521
-
-
Kim, Y.H.1
Liang, H.2
Liu, X.3
Lee, J.S.4
Cho, J.Y.5
Cheong, J.H.6
Kim, H.7
Li, M.8
Downey, T.J.9
Dyer, M.D.10
Sun, Y.11
Sun, J.12
Beasley, E.M.13
Chung, H.C.14
Noh, S.H.15
Weinstein, J.N.16
Liu, C.G.17
Powis, G.18
-
23
-
-
84863922124
-
Comprehensive molecular characterization of human colon and rectal cancer
-
The Cancer Genome Atlas Network.
-
The Cancer Genome Atlas Network. Comprehensive molecular characterization of human colon and rectal cancer. Nature 2012, 487 (7407), 330-7.
-
(2012)
Nature
, vol.487
, Issue.7407
, pp. 330-337
-
-
-
24
-
-
80054771709
-
RNA-Seq analyses generate comprehensive transcriptomic landscape and reveal complex transcript patterns in hepatocellular carcinoma
-
Huang, Q.; Lin, B.; Liu, H.; Ma, X.; Mo, F.; Yu, W.; Li, L.; Li, H.; Tian, T.; Wu, D.; Shen, F.; Xing, J.; Chen, Z. N. RNA-Seq analyses generate comprehensive transcriptomic landscape and reveal complex transcript patterns in hepatocellular carcinoma. PLoS One 2011, 6 (10), e26168.
-
(2011)
PLoS One
, vol.6
, Issue.10
-
-
Huang, Q.1
Lin, B.2
Liu, H.3
Ma, X.4
Mo, F.5
Yu, W.6
Li, L.7
Li, H.8
Tian, T.9
Wu, D.10
Shen, F.11
Xing, J.12
Chen, Z.N.13
-
25
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A.; Williams, B. A.; McCue, K.; Schaeffer, L.; Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 2008, 5 (7), 621-8.
-
(2008)
Nat. Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
26
-
-
84859326067
-
Functions for robust correlations and hierarchical clustering
-
Langfelder, P.; Horvath, S.; Fast, R. Functions for robust correlations and hierarchical clustering. J. Stat. Software 2012, 46, 11.
-
(2012)
J. Stat. Software
, vol.46
, pp. 11
-
-
Langfelder, P.1
Horvath, S.2
Fast, R.3
-
27
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M.; Schein, J.; Birol, I.; Connors, J.; Gascoyne, R.; Horsman, D.; Jones, S. J.; Marra, M. A. Circos: an information aesthetic for comparative genomics. Genome Res. 2009, 19 (9), 1639-45.
-
(2009)
Genome Res.
, vol.19
, Issue.9
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
28
-
-
78651293534
-
MiRBase: Integrating microRNA annotation and deep-sequencing data
-
Kozomara, A.; Griffiths-Jones, S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011, 39 (Database issue), D152-7.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
29
-
-
34249848751
-
CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
-
Parra, G.; Bradnam, K.; Korf, I. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 2007, 23 (9), 1061-7.
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
31
-
-
3142756502
-
Open source clustering software
-
de Hoon, M. J.; Imoto, S.; Nolan, J.; Miyano, S. Open source clustering software. Bioinformatics 2004, 20 (9), 1453-4.
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1453-1454
-
-
De Hoon, M.J.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
32
-
-
84865839022
-
DNA copy number aberrations associated with lymphovascular invasion in upper urinary tract urothelial carcinoma
-
Misumi, T.; Yamamoto, Y.; Miyachika, Y.; Eguchi, S.; Chochi, Y.; Nakao, M.; Nagao, K.; Hara, T.; Sakano, S.; Furuya, T.; Oga, A.; Kawauchi, S.; Sasaki, K.; Matsuyama, H. DNA copy number aberrations associated with lymphovascular invasion in upper urinary tract urothelial carcinoma. Cancer Genet. 2012, 205 (6), 313-8.
-
(2012)
Cancer Genet.
, vol.205
, Issue.6
, pp. 313-318
-
-
Misumi, T.1
Yamamoto, Y.2
Miyachika, Y.3
Eguchi, S.4
Chochi, Y.5
Nakao, M.6
Nagao, K.7
Hara, T.8
Sakano, S.9
Furuya, T.10
Oga, A.11
Kawauchi, S.12
Sasaki, K.13
Matsuyama, H.14
-
33
-
-
33646900714
-
DNA copy number aberrations in intestinal-type gastric cancer revealed by array-based comparative genomic hybridization
-
Vauhkonen, H.; Vauhkonen, M.; Sajantila, A.; Sipponen, P.; Knuutila, S. DNA copy number aberrations in intestinal-type gastric cancer revealed by array-based comparative genomic hybridization. Cancer Genet. Cytogenet. 2006, 167 (2), 150-4.
-
(2006)
Cancer Genet. Cytogenet.
, vol.167
, Issue.2
, pp. 150-154
-
-
Vauhkonen, H.1
Vauhkonen, M.2
Sajantila, A.3
Sipponen, P.4
Knuutila, S.5
-
34
-
-
77949372605
-
Characterization of chromosome arm 20q abnormalities in myeloid malignancies using genome-wide single nucleotide polymorphism array analysis
-
Huh, J.; Tiu, R. V.; Gondek, L. P.; O'Keefe, C. L.; Jasek, M.; Makishima, H.; Jankowska, A. M.; Jiang, Y.; Verma, A.; Theil, K. S.; McDevitt, M. A.; Maciejewski, J. P. Characterization of chromosome arm 20q abnormalities in myeloid malignancies using genome-wide single nucleotide polymorphism array analysis. Genes Chromosomes Cancer 2010, 49 (4), 390-9.
-
(2010)
Genes Chromosomes Cancer
, vol.49
, Issue.4
, pp. 390-399
-
-
Huh, J.1
Tiu, R.V.2
Gondek, L.P.3
O'keefe, C.L.4
Jasek, M.5
Makishima, H.6
Jankowska, A.M.7
Jiang, Y.8
Verma, A.9
Theil, K.S.10
McDevitt, M.A.11
MacIejewski, J.P.12
-
35
-
-
84887212487
-
A histone map of human chromosome 20q13.12
-
Akan, P.; Sahlen, M.; Deloukas, P. A histone map of human chromosome 20q13.12. PLoS One 2009, 4 (2), e4479.
-
(2009)
PLoS One
, vol.4
, Issue.2
-
-
Akan, P.1
Sahlen, M.2
Deloukas, P.3
-
36
-
-
0034632693
-
Chromosome 20 deletions in myeloid malignancies: Reduction of the common deleted region, generation of a PAC/BAC contig and identification of candidate genes
-
Bench, A. J.; Nacheva, E. P.; Hood, T. L.; Holden, J. L.; French, L.; Swanton, S.; Champion, K. M.; Li, J.; Whittaker, P.; Stavrides, G.; Hunt, A. R.; Huntly, B. J.; Campbell, L. J.; Bentley, D. R.; Deloukas, P.; Green, A. R. Chromosome 20 deletions in myeloid malignancies: reduction of the common deleted region, generation of a PAC/BAC contig and identification of candidate genes. UK Cancer Cytogenetics Group (UKCCG). Oncogene 2000, 19 (34), 3902-13.
-
(2000)
UK Cancer Cytogenetics Group (UKCCG). Oncogene
, vol.19
, Issue.34
, pp. 3902-3913
-
-
Bench, A.J.1
Nacheva, E.P.2
Hood, T.L.3
Holden, J.L.4
French, L.5
Swanton, S.6
Champion, K.M.7
Li, J.8
Whittaker, P.9
Stavrides, G.10
Hunt, A.R.11
Huntly, B.J.12
Campbell, L.J.13
Bentley, D.R.14
Deloukas, P.15
Green, A.R.16
-
37
-
-
77957555896
-
The paradox of 20q11.21 amplification in a subset of cases of myeloid malignancy with chromosome 20 deletion
-
Mackinnon, R. N.; Selan, C.; Wall, M.; Baker, E.; Nandurkar, H.; Campbell, L. J. The paradox of 20q11.21 amplification in a subset of cases of myeloid malignancy with chromosome 20 deletion. Genes Chromosomes Cancer 2010, 49 (11), 998-1013.
-
(2010)
Genes Chromosomes Cancer
, vol.49
, Issue.11
, pp. 998-1013
-
-
MacKinnon, R.N.1
Selan, C.2
Wall, M.3
Baker, E.4
Nandurkar, H.5
Campbell, L.J.6
-
38
-
-
84866357684
-
Association of betadefensin copy number and psoriasis in three cohorts of european origin
-
Stuart, P. E.; Huffmeier, U.; Nair, R. P.; Palla, R.; Tejasvi, T.; Schalkwijk, J.; Elder, J. T.; Reis, A.; Armour, J. A. Association of betadefensin copy number and psoriasis in three cohorts of european origin. J. Invest. Dermatol. 2012, 132, 2407-13.
-
(2012)
J. Invest. Dermatol.
, vol.132
, pp. 2407-2413
-
-
Stuart, P.E.1
Huffmeier, U.2
Nair, R.P.3
Palla, R.4
Tejasvi, T.5
Schalkwijk, J.6
Elder, J.T.7
Reis, A.8
Armour, J.A.9
-
39
-
-
84874046253
-
Comparative simulation studies of native and single-site mutant human beta-defensin-1 peptides
-
Toubar, R. A.; Zhmurov, A.; Barsegov, V.; Marx, K. A. Comparative simulation studies of native and single-site mutant human beta-defensin-1 peptides. J. Biomol. Struct. Dyn. 2012.
-
(2012)
J. Biomol. Struct. Dyn.
-
-
Toubar, R.A.1
Zhmurov, A.2
Barsegov, V.3
Marx, K.A.4
-
40
-
-
84870988159
-
Genome-wide association study of glioma and metaanalysis
-
Rajaraman, P.; Melin, B. S.; Wang, Z.; McKean-Cowdin, R.; Michaud, D. S.; Wang, S. S.; Bondy, M.; Houlston, R.; Jenkins, R. B.; Wrensch, M.; Yeager, M.; Ahlbom, A.; Albanes, D.; Andersson, U.; Freeman, L. E.; Buring, J. E.; Butler, M. A.; Braganza, M.; Carreon, T.; Feychting, M.; Fleming, S. J.; Gapstur, S. M.; Gaziano, J. M.; Giles, G. G.; Hallmans, G.; Henriksson, R.; Hoffman-Bolton, J.; Inskip, P. D.; Johansen, C.; Kitahara, C. M.; Lathrop, M.; Liu, C.; Le Marchand, L.; Linet, M. S.; Lonn, S.; Peters, U.; Purdue, M. P.; Rothman, N.; Ruder, A. M.; Sanson, M.; Sesso, H. D.; Severi, G.; Shu, X. O.; Simon, M.; Stampfer, M.; Stevens, V. L.; Visvanathan, K.; White, E.; Wolk, A.; Zeleniuch-Jacquotte, A.; Zheng, W.; Decker, P.; Enciso-Mora, V.; Fridley, B.; Gao, Y. T.; Kosel, M.; Lachance, D. H.; Lau, C.; Rice, T.; Swerdlow, A.; Wiemels, J. L.; Wiencke, J. K.; Shete, S.; Xiang, Y. B.; Xiao, Y.; Hoover, R. N.; Fraumeni, J. F., Jr.; Chatterjee, N.; Hartge, P.; Chanock, S. J. Genome-wide association study of glioma and metaanalysis. Hum. Genet. 2012, 131 (12), 1877-88.
-
(2012)
Hum. Genet.
, vol.131
, Issue.12
, pp. 1877-1888
-
-
Rajaraman, P.1
Melin, B.S.2
Wang, Z.3
McKean-Cowdin, R.4
Michaud, D.S.5
Wang, S.S.6
Bondy, M.7
Houlston, R.8
Jenkins, R.B.9
Wrensch, M.10
Yeager, M.11
Ahlbom, A.12
Albanes, D.13
Andersson, U.14
Freeman, L.E.15
Buring, J.E.16
Butler, M.A.17
Braganza, M.18
Carreon, T.19
Feychting, M.20
Fleming, S.J.21
Gapstur, S.M.22
Gaziano, J.M.23
Giles, G.G.24
Hallmans, G.25
Henriksson, R.26
Hoffman-Bolton, J.27
Inskip, P.D.28
Johansen, C.29
Kitahara, C.M.30
Lathrop, M.31
Liu, C.32
Le Marchand, L.33
Linet, M.S.34
Lonn, S.35
Peters, U.36
Purdue, M.P.37
Rothman, N.38
Ruder, A.M.39
Sanson, M.40
Sesso, H.D.41
Severi, G.42
Shu, X.O.43
Simon, M.44
Stampfer, M.45
Stevens, V.L.46
Visvanathan, K.47
White, E.48
Wolk, A.49
Zeleniuch-Jacquotte, A.50
Zheng, W.51
Decker, P.52
Enciso-Mora, V.53
Fridley, B.54
Gao, Y.T.55
Kosel, M.56
Lachance, D.H.57
Lau, C.58
Rice, T.59
Swerdlow, A.60
Wiemels, J.L.61
Wiencke, J.K.62
Shete, S.63
Xiang, Y.B.64
Xiao, Y.65
Hoover, R.N.66
Fraumeni Jr., J.F.67
Chatterjee, N.68
Hartge, P.69
Chanock, S.J.70
more..
-
41
-
-
78049353079
-
Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33
-
Houlston, R. S.; Cheadle, J.; Dobbins, S. E.; Tenesa, A.; Jones, A. M.; Howarth, K.; Spain, S. L.; Broderick, P.; Domingo, E.; Farrington, S.; Prendergast, J. G.; Pittman, A. M.; Theodoratou, E.; Smith, C. G.; Olver, B.; Walther, A.; Barnetson, R. A.; Churchman, M.; Jaeger, E. E.; Penegar, S.; Barclay, E.; Martin, L.; Gorman, M.; Mager, R.; Johnstone, E.; Midgley, R.; Niittymaki, I.; Tuupanen, S.; Colley, J.; Idziaszczyk, S.; Thomas, H. J.; Lucassen, A. M.; Evans, D. G.; Maher, E. R.; Maughan, T.; Dimas, A.; Dermitzakis, E.; Cazier, J. B.; Aaltonen, L. A.; Pharoah, P.; Kerr, D. J.; Carvajal-Carmona, L. G.; Campbell, H.; Dunlop, M. G.; Tomlinson, I. P. Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33. Nat. Genet. 2010, 42 (11), 973-7.
-
(2010)
Nat. Genet.
, vol.42
, Issue.11
, pp. 973-977
-
-
Houlston, R.S.1
Cheadle, J.2
Dobbins, S.E.3
Tenesa, A.4
Jones, A.M.5
Howarth, K.6
Spain, S.L.7
Broderick, P.8
Domingo, E.9
Farrington, S.10
Prendergast, J.G.11
Pittman, A.M.12
Theodoratou, E.13
Smith, C.G.14
Olver, B.15
Walther, A.16
Barnetson, R.A.17
Churchman, M.18
Jaeger, E.E.19
Penegar, S.20
Barclay, E.21
Martin, L.22
Gorman, M.23
Mager, R.24
Johnstone, E.25
Midgley, R.26
Niittymaki, I.27
Tuupanen, S.28
Colley, J.29
Idziaszczyk, S.30
Thomas, H.J.31
Lucassen, A.M.32
Evans, D.G.33
Maher, E.R.34
Maughan, T.35
Dimas, A.36
Dermitzakis, E.37
Cazier, J.B.38
Aaltonen, L.A.39
Pharoah, P.40
Kerr, D.J.41
Carvajal-Carmona, L.G.42
Campbell, H.43
Dunlop, M.G.44
Tomlinson, I.P.45
more..
-
42
-
-
84860468134
-
Fine mapping analysis of a region of 20q13.33 identified five independent susceptibility loci for glioma in a Chinese Han population
-
Song, X.; Zhou, K.; Zhao, Y.; Huai, C.; Yu, H.; Chen, Y.; Chen, G.; Chen, H.; Fan, W.; Mao, Y.; Lu, D. Fine mapping analysis of a region of 20q13.33 identified five independent susceptibility loci for glioma in a Chinese Han population. Carcinogenesis 2012, 33 (5), 1065-71.
-
(2012)
Carcinogenesis
, vol.33
, Issue.5
, pp. 1065-1071
-
-
Song, X.1
Zhou, K.2
Zhao, Y.3
Huai, C.4
Yu, H.5
Chen, Y.6
Chen, G.7
Chen, H.8
Fan, W.9
Mao, Y.10
Lu, D.11
-
43
-
-
84865662406
-
Downregulation of NF-kappaB and PCNA in the regulatory pathways of apoptosis by cyclooxygenase-2 inhibitors in experimental lung cancer
-
Setia, S.; Sanyal, S. N. Downregulation of NF-kappaB and PCNA in the regulatory pathways of apoptosis by cyclooxygenase-2 inhibitors in experimental lung cancer. Mol. Cell. Biochem. 2012, 369 (1-2), 75-86.
-
(2012)
Mol. Cell. Biochem.
, vol.369
, Issue.1-2
, pp. 75-86
-
-
Setia, S.1
Sanyal, S.N.2
-
44
-
-
84855415190
-
Interaction of proliferation cell nuclear antigen (PCNA) with c-Abl in cell proliferation and response to DNA damages in breast cancer
-
Zhao, H.; Ho, P. C.; Lo, Y. H.; Espejo, A.; Bedford, M. T.; Hung, M. C.; Wang, S. C. Interaction of proliferation cell nuclear antigen (PCNA) with c-Abl in cell proliferation and response to DNA damages in breast cancer. PLoS One 2012, 7 (1), e29416.
-
(2012)
PLoS One
, vol.7
, Issue.1
-
-
Zhao, H.1
Ho, P.C.2
Lo, Y.H.3
Espejo, A.4
Bedford, M.T.5
Hung, M.C.6
Wang, S.C.7
-
45
-
-
42549132465
-
POLR2F, ATP6V0A1 and PRNP expression in colorectal cancer: New molecules with prognostic significance?
-
Antonacopoulou, A. G.; Grivas, P. D.; Skarlas, L.; Kalofonos, M.; Scopa, C. D.; Kalofonos, H. P. POLR2F, ATP6V0A1 and PRNP expression in colorectal cancer: new molecules with prognostic significance? Anticancer Res. 2008, 28 (2B), 1221-7.
-
(2008)
Anticancer Res.
, vol.28
, Issue.2 B
, pp. 1221-1227
-
-
Antonacopoulou, A.G.1
Grivas, P.D.2
Skarlas, L.3
Kalofonos, M.4
Scopa, C.D.5
Kalofonos, H.P.6
-
46
-
-
77954467029
-
Prion protein expression and the M129V polymorphism of the PRNP gene in patients with colorectal cancer
-
Antonacopoulou, A. G.; Palli, M.; Marousi, S.; Dimitrakopoulos, F. I.; Kyriakopoulou, U.; Tsamandas, A. C.; Scopa, C. D.; Papavassiliou, A. G.; Kalofonos, H. P. Prion protein expression and the M129V polymorphism of the PRNP gene in patients with colorectal cancer. Mol. Carcinog. 2010, 49 (7), 693-9.
-
(2010)
Mol. Carcinog.
, vol.49
, Issue.7
, pp. 693-699
-
-
Antonacopoulou, A.G.1
Palli, M.2
Marousi, S.3
Dimitrakopoulos, F.I.4
Kyriakopoulou, U.5
Tsamandas, A.C.6
Scopa, C.D.7
Papavassiliou, A.G.8
Kalofonos, H.P.9
-
47
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
Nagaraj, N.; Wisniewski, J. R.; Geiger, T.; Cox, J.; Kircher, M.; Kelso, J.; Paabo, S.; Mann, M. Deep proteome and transcriptome mapping of a human cancer cell line. Mol. Syst. Biol. 2011, 7, 548.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
Cox, J.4
Kircher, M.5
Kelso, J.6
Paabo, S.7
Mann, M.8
-
48
-
-
77957909505
-
A genotype-first approach for the molecular and clinical characterization of uncommon de novo microdeletion of 20q13.33
-
Traylor, R. N.; Bruno, D. L.; Burgess, T.; Wildin, R.; Spencer, A.; Ganesamoorthy, D.; Amor, D. J.; Hunter, M.; Caplan, M.; Rosenfeld, J. A.; Theisen, A.; Torchia, B. S.; Shaffer, L. G.; Ballif, B. C.; Slater, H. R. A genotype-first approach for the molecular and clinical characterization of uncommon de novo microdeletion of 20q13.33. PLoS One 2010, 5 (8), e12462.
-
(2010)
PLoS One
, vol.5
, Issue.8
-
-
Traylor, R.N.1
Bruno, D.L.2
Burgess, T.3
Wildin, R.4
Spencer, A.5
Ganesamoorthy, D.6
Amor, D.J.7
Hunter, M.8
Caplan, M.9
Rosenfeld, J.A.10
Theisen, A.11
Torchia, B.S.12
Shaffer, L.G.13
Ballif, B.C.14
Slater, H.R.15
|