Death inducer obliterator protein 1 in the context of DNA regulation: Sequence analyses of distant homologues point to a novel functional role

FEBS Journal

Volumn 272, Issue 14, 2005, Pages 3505-3511

  Rojas, Ana M ^a   Sanchez Pulido, Luis ^a   Fütterer, Agnes ^a   Van Wely, Karel H M ^a   Martinez A, Carlos ^a   Valencia, Alfonso ^a  

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

Author keywords

CGBP; DATF1; DIDO1; DIO; SPP1

Indexed keywords

DEATH INDUCER OBLITERATOR PROTEIN 1; DNA BINDING PROTEIN; GREEN FLUORESCENT PROTEIN; UNCLASSIFIED DRUG;

ANAPHASE; ANIMAL CELL; APOPTOSIS; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL DIVISION; CHROMATIN STRUCTURE; CHROMOSOMAL INSTABILITY; CONTROLLED STUDY; CPG ISLAND; DNA BINDING; DNA DETERMINATION; FIBROBLAST; GENE OVEREXPRESSION; GENE TARGETING; HUMAN; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; REGULATORY DNA SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; YEAST;

ANAPHASE; ANIMALS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DNA; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION; HUMANS; PHYLOGENY; SEQUENCE HOMOLOGY; TRANSCRIPTION FACTORS;

EUKARYOTA; MAMMALIA; VERTEBRATA;

EID: 22544457600     PISSN: 1742464X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2005.04759.x     Document Type: Article

References (30)

1. Aravind L, Dixit VM & Koonin EV (1999) The domains of death: evolution of the apoptosis machinery. Trends Biochem Sci 24, 47-53.
2. Garcia-Domingo D, Leonardo E, Grandien A, Martinez P, Albar JP, Izpisua-Belmonte JC & Martinez AC (1999) DIO-1 is a gene involved in onset of apoptosis in vitro, whose misexpression disrupts limb development. Proc Natl Acad Sci USA 96, 7992-7997.
3. Garcia-Domingo D, Ramirez D, Gonzalez de Buitrago G & Martinez AC (2003) Death inducer-obliterator 1 triggers apoptosis after nuclear translocation and caspase upregulation. Mol Cell Biol 23, 3216-3225.
4. Sanchez-Pulido L, Rojas AM, van Wely KH, Martinez AC & Valencia A (2004) SPOC: a widely distributed domain associated with cancer, apoptosis and transcription. BMC Bioinformatics 5, 91.
5. Copley RR, Doerks T, Letunic I & Bork P (2002) Protein domain analysis in the era of complete genomes. FEBS Lett 513, 129-134.
6. Ponting CP & Dickens NJ (2001) Genome cartography through domain annotation. Genome Biol 2, Comment 2006.
7. Voo KS, Carlone DL, Jacobsen BM, Flodin A & Skalnik DG (2000) Cloning of a mammalian transcriptional activator that binds unmethylated CpG motifs and shares a CXXC domain with DNA methyltransferase, human trithorax, and methyl-CpG binding domain protein 1. Mol Cell Biol 20, 2108-2121.
8. Miller T, Krogan NJ, Dover J, Erdjument-Bromage H, Tempst P, Johnston M, Greenblatt JF & Shilatifard A (2001) COMPASS: a complex of proteins associated with a trithorax-related SET domain protein. Proc Natl Acad Sci USA 98, 12902-12907.
9. Tenney K & Shilatifard A (2005) A COMPASS in the voyage of defining the role of trithorax/MLL-containing complexes: Linking leukemogensis to covalent modifications of chromatin. J Cell Biochem 95, 429-436.
10. Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R & Stewart AF (2001) The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4. EMBO J 20, 7137-7148.
11. Kennison JA (1995) The Polycomb and trithorax group proteins of Drosophila: trans-regulators of homeotic gene function. Annu Rev Genet 29, 289-303.
12. Shearn A (1989) The ash-1, ash-2 and trithorax genes of Drosophila melanogaster are functionally related. Genetics 121, 517-525.
13. Mazo AM, Huang DH, Mozer BA & Dawid IB (1990) The trithorax gene, a trans-acting regulator of the bithorax complex in Drosophila, encodes a protein with zinc-binding domains. Proc Natl Acad Sci USA 87, 2112-2116.
14. Tripoulas N, LaJeunesse D, Gildea J & Shearn A (1996) The Drosophila ash1 gene product, which is localized at specific sites on polytene chromosomes, contains a SET domain and a PHD finger. Genetics 143, 913-928.
15. Morin PE, Awrey DE, Edwards AM & Arrowsmith CH (1996) Elongation factor TFIIS contains three structural domains: solution structure of domain II. Proc Natl Acad Sci USA 93, 10604-10608.
16. Qian X, Jeon C, Yoon H, Agarwal K & Weiss MA (1993) Structure of a new nucleic-acid-binding motif in eukaryotic transcriptional elongation factor TFIIS. Nature 365, 277-279.
17. Fischer U, Struss AK, Hemmer D, Michel A, Henn W, Steudel WI & Meese E (2001) PHF3 expression is frequently reduced in glioma. Cytogenet Cell Genet 94, 131-136.
18. Struss AK, Romeike BF, Munnia A, Nastainczyk W, Steudel WI, Konig J, Ohgaki H, Feiden W, Fischer U & Meese E (2001) PHF3-specific antibody responses in over 60% of patients with glioblastoma multiforme. Oncogene 20, 4107-4114.
19. Peters AH, O'Carroll D, Scherthan H, Mechtler K, Sauer S, Schofer C, Weipoltshammer K, Pagani M, Lachner M, Kohlmaier A et al. (2001) Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability. Cell 107, 323-337.
20. Cimini D, Mattiuzzo M, Torosantucci L & Degrassi F (2003) Histone hyperacetylation in mitosis prevents sister chromatid separation and produces chromosome segregation defects. Mol Biol Cell 14, 3821-3833.
21. Shen WH & Meyer D (2004) Ectopic expression of the NtSET1 histone methyltransferase inhibits cell expansion, and affects cell division and differentiation in tobacco plants. Plant Cell Physiol 45, 1715-1719.
22. Sonnhammer EL, Eddy SR, Birney E, Bateman A & Durbin R (1998) Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res 26, 320-322.
23. Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M & Sonnhammer EL (2002) The Pfam protein families database. Nucleic Acids Res 30, 276-280.
24. Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP & Bork P (2004) SMART 4.0: towards genomic data integration. Nucleic Acids Res 32, Database issue, D142-144.
25. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W & Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
26. Altschul SF & Koonin EV (1998) Iterated profile searches with PSI-BLAST - a tool for discovery in protein databases. Trends Biochem Sci 23, 444-447.
27. Cummings L, Riley L, Black L, Souvorov A, Resenchuk S, Dondoshansky I & Tatusova T (2002) Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes. FEMS Microbiol Lett 216, 133-138.
28. Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14, 755-763.
29. Notredame C, Higgins DG & Heringa J (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 302, 205-217.
30. Ronquist F & Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.