메뉴 건너뛰기




Volumn 9, Issue 6, 2013, Pages

Integrative "Omics"-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PROTEOME; SIGMA FACTOR; SIGMA FACTOR RPOE; SIGMA FACTOR RPOH2; SINGLET OXYGEN; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 84879639724     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1003576     Document Type: Article
Times cited : (51)

References (72)
  • 1
    • 71149108056 scopus 로고    scopus 로고
    • Correlation of mRNA and protein in complex biological samples
    • Maier T, Guell M, Serrano L, (2009) Correlation of mRNA and protein in complex biological samples. FEBS Lett 583: 3966-3973.
    • (2009) FEBS Lett , vol.583 , pp. 3966-3973
    • Maier, T.1    Guell, M.2    Serrano, L.3
  • 3
    • 0141920354 scopus 로고    scopus 로고
    • Comparing protein abundance and mRNA expression levels on a genomic scale
    • Greenbaum D, Colangelo C, Williams K, Gerstein M, (2003) Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 4: 117.
    • (2003) Genome Biol , vol.4 , pp. 117
    • Greenbaum, D.1    Colangelo, C.2    Williams, K.3    Gerstein, M.4
  • 4
    • 33846165487 scopus 로고    scopus 로고
    • Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
    • Lu P, Vogel C, Wang R, Yao X, Marcotte EM, (2007) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat Biotechnol 25: 117-124.
    • (2007) Nat Biotechnol , vol.25 , pp. 117-124
    • Lu, P.1    Vogel, C.2    Wang, R.3    Yao, X.4    Marcotte, E.M.5
  • 5
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS, (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 6
    • 79960578471 scopus 로고    scopus 로고
    • Quantification of mRNA and protein and integration with protein turnover in a bacterium
    • Maier T, Schmidt A, Guell M, Kuhner S, Gavin AC, et al. (2011) Quantification of mRNA and protein and integration with protein turnover in a bacterium. Mol Syst Biol 7: 511.
    • (2011) Mol Syst Biol , vol.7 , pp. 511
    • Maier, T.1    Schmidt, A.2    Guell, M.3    Kuhner, S.4    Gavin, A.C.5
  • 7
    • 38149126389 scopus 로고    scopus 로고
    • Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea
    • Lange C, Zaigler A, Hammelmann M, Twellmeyer J, Raddatz G, et al. (2007) Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea. BMC Genomics 8: 415.
    • (2007) BMC Genomics , vol.8 , pp. 415
    • Lange, C.1    Zaigler, A.2    Hammelmann, M.3    Twellmeyer, J.4    Raddatz, G.5
  • 8
    • 84866931928 scopus 로고    scopus 로고
    • Bacterial translational regulations: high diversity between all mRNAs and major role in gene expression
    • Picard F, Milhem H, Loubiere P, Laurent B, Cocaign-Bousquet M, et al. (2012) Bacterial translational regulations: high diversity between all mRNAs and major role in gene expression. BMC Genomics 13: 528.
    • (2012) BMC Genomics , vol.13 , pp. 528
    • Picard, F.1    Milhem, H.2    Loubiere, P.3    Laurent, B.4    Cocaign-Bousquet, M.5
  • 9
    • 34047245826 scopus 로고    scopus 로고
    • A network of multiple regulatory layers shapes gene expression in fission yeast
    • Lackner DH, Beilharz TH, Marguerat S, Mata J, Watt S, et al. (2007) A network of multiple regulatory layers shapes gene expression in fission yeast. Mol Cell 26: 145-155.
    • (2007) Mol Cell , vol.26 , pp. 145-155
    • Lackner, D.H.1    Beilharz, T.H.2    Marguerat, S.3    Mata, J.4    Watt, S.5
  • 10
    • 65249176527 scopus 로고    scopus 로고
    • Stress-dependent coordination of transcriptome and translatome in yeast
    • Halbeisen RE, Gerber AP, (2009) Stress-dependent coordination of transcriptome and translatome in yeast. PLoS Biol 7: e1000105.
    • (2009) PLoS Biol , vol.7
    • Halbeisen, R.E.1    Gerber, A.P.2
  • 11
    • 55249096894 scopus 로고    scopus 로고
    • Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    • de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, et al. (2008) Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 455: 1251-1254.
    • (2008) Nature , vol.455 , pp. 1251-1254
    • de Godoy, L.M.1    Olsen, J.V.2    Cox, J.3    Nielsen, M.L.4    Hubner, N.C.5
  • 12
    • 84857938446 scopus 로고    scopus 로고
    • Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins
    • M111 014050
    • Geiger T, Wehner A, Schaab C, Cox J, Mann M, (2012) Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins. Mol Cell Proteomics 11: M111 014050.
    • (2012) Mol Cell Proteomics , vol.11
    • Geiger, T.1    Wehner, A.2    Schaab, C.3    Cox, J.4    Mann, M.5
  • 13
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, et al. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1: 376-386.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5
  • 14
    • 79959424627 scopus 로고    scopus 로고
    • Quantitative, high-resolution proteomics for data-driven systems biology
    • Cox J, Mann M, (2011) Quantitative, high-resolution proteomics for data-driven systems biology. Annu Rev Biochem 80: 273-299.
    • (2011) Annu Rev Biochem , vol.80 , pp. 273-299
    • Cox, J.1    Mann, M.2
  • 15
    • 84866137157 scopus 로고    scopus 로고
    • Spiked-in pulsed in vivo labeling identifies a new member of the CCN family in regenerating newt hearts
    • Looso M, Michel CS, Konzer A, Bruckskotten M, Borchardt T, et al. (2012) Spiked-in pulsed in vivo labeling identifies a new member of the CCN family in regenerating newt hearts. J Proteome Res 11: 4693-4704.
    • (2012) J Proteome Res , vol.11 , pp. 4693-4704
    • Looso, M.1    Michel, C.S.2    Konzer, A.3    Bruckskotten, M.4    Borchardt, T.5
  • 16
    • 77953155113 scopus 로고    scopus 로고
    • Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry
    • Looso M, Borchardt T, Kruger M, Braun T, (2010) Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry. Mol Cell Proteomics 9: 1157-1166.
    • (2010) Mol Cell Proteomics , vol.9 , pp. 1157-1166
    • Looso, M.1    Borchardt, T.2    Kruger, M.3    Braun, T.4
  • 17
    • 84856791097 scopus 로고    scopus 로고
    • Novel roles of Caenorhabditis elegans heterochromatin protein HP1 and linker histone in the regulation of innate immune gene expression
    • Studencka M, Konzer A, Moneron G, Wenzel D, Opitz L, et al. (2012) Novel roles of Caenorhabditis elegans heterochromatin protein HP1 and linker histone in the regulation of innate immune gene expression. Mol Cell Biol 32: 251-265.
    • (2012) Mol Cell Biol , vol.32 , pp. 251-265
    • Studencka, M.1    Konzer, A.2    Moneron, G.3    Wenzel, D.4    Opitz, L.5
  • 18
    • 77956413429 scopus 로고    scopus 로고
    • Comparison of surface proteomes of enterotoxigenic (ETEC) and commensal Escherichia coli strains
    • Sommer U, Petersen J, Pfeiffer M, Schrotz-King P, Morsczeck C, (2010) Comparison of surface proteomes of enterotoxigenic (ETEC) and commensal Escherichia coli strains. J Microbiol Methods 83: 13-19.
    • (2010) J Microbiol Methods , vol.83 , pp. 13-19
    • Sommer, U.1    Petersen, J.2    Pfeiffer, M.3    Schrotz-King, P.4    Morsczeck, C.5
  • 19
    • 77954371891 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis
    • Soufi B, Kumar C, Gnad F, Mann M, Mijakovic I, et al. (2010) Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis. J Proteome Res 9: 3638-3646.
    • (2010) J Proteome Res , vol.9 , pp. 3638-3646
    • Soufi, B.1    Kumar, C.2    Gnad, F.3    Mann, M.4    Mijakovic, I.5
  • 20
    • 0032874676 scopus 로고    scopus 로고
    • Regulation of bacterial photosynthesis genes by oxygen and light
    • Gregor J, Klug G, (1999) Regulation of bacterial photosynthesis genes by oxygen and light. FEMS Microbiol Lett 179: 1-9.
    • (1999) FEMS Microbiol Lett , vol.179 , pp. 1-9
    • Gregor, J.1    Klug, G.2
  • 22
    • 1542313800 scopus 로고    scopus 로고
    • Oxygen intervention in the regulation of gene expression: the photosynthetic bacterial paradigm
    • Zeilstra-Ryalls JH, Kaplan S, (2004) Oxygen intervention in the regulation of gene expression: the photosynthetic bacterial paradigm. Cell Mol Life Sci 61: 417-436.
    • (2004) Cell Mol Life Sci , vol.61 , pp. 417-436
    • Zeilstra-Ryalls, J.H.1    Kaplan, S.2
  • 23
    • 21344459291 scopus 로고    scopus 로고
    • Photo-oxidative stress in Rhodobacter sphaeroides: protective role of carotenoids and expression of selected genes
    • Glaeser J, Klug G, (2005) Photo-oxidative stress in Rhodobacter sphaeroides: protective role of carotenoids and expression of selected genes. Microbiology 151: 1927-1938.
    • (2005) Microbiology , vol.151 , pp. 1927-1938
    • Glaeser, J.1    Klug, G.2
  • 26
    • 7744242257 scopus 로고    scopus 로고
    • Responses of the Rhodobacter sphaeroides transcriptome to blue light under semiaerobic conditions
    • Braatsch S, Moskvin OV, Klug G, Gomelsky M, (2004) Responses of the Rhodobacter sphaeroides transcriptome to blue light under semiaerobic conditions. Journal of Bacteriology 186: 7726-7735.
    • (2004) Journal of Bacteriology , vol.186 , pp. 7726-7735
    • Braatsch, S.1    Moskvin, O.V.2    Klug, G.3    Gomelsky, M.4
  • 27
    • 34547199027 scopus 로고    scopus 로고
    • Protein synthesis patterns reveal a complex regulatory response to singlet oxygen in Rhodobacter
    • Glaeser J, Zobawa M, Lottspeich F, Klug G, (2007) Protein synthesis patterns reveal a complex regulatory response to singlet oxygen in Rhodobacter. Journal of Proteome Research 6: 2460-2471.
    • (2007) Journal of Proteome Research , vol.6 , pp. 2460-2471
    • Glaeser, J.1    Zobawa, M.2    Lottspeich, F.3    Klug, G.4
  • 28
    • 77952022168 scopus 로고    scopus 로고
    • Overlapping alternative sigma factor regulons in the response to singlet oxygen in Rhodobacter sphaeroides
    • Nuss AM, Glaeser J, Berghoff BA, Klug G, (2010) Overlapping alternative sigma factor regulons in the response to singlet oxygen in Rhodobacter sphaeroides. J Bacteriol 192: 2613-2623.
    • (2010) J Bacteriol , vol.192 , pp. 2613-2623
    • Nuss, A.M.1    Glaeser, J.2    Berghoff, B.A.3    Klug, G.4
  • 29
    • 58149503635 scopus 로고    scopus 로고
    • RpoHII Activates Oxidative-Stress Defense Systems and Is Controlled by RpoE in the Singlet Oxygen-Dependent Response in Rhodobacter sphaeroides
    • Nuss AM, Glaeser J, Klug G, (2009) RpoHII Activates Oxidative-Stress Defense Systems and Is Controlled by RpoE in the Singlet Oxygen-Dependent Response in Rhodobacter sphaeroides. Journal of Bacteriology 191: 220-230.
    • (2009) Journal of Bacteriology , vol.191 , pp. 220-230
    • Nuss, A.M.1    Glaeser, J.2    Klug, G.3
  • 30
    • 34250697880 scopus 로고    scopus 로고
    • The phrA gene of Rhodobacter sphaeroides encodes a photolyase and is regulated by singlet oxygen and peroxide in a σE-dependent manner
    • Hendrischk A-K, Braatsch S, Glaeser J, Klug G, (2007) The phrA gene of Rhodobacter sphaeroides encodes a photolyase and is regulated by singlet oxygen and peroxide in a σE-dependent manner. Microbiology 153: 1842-1851.
    • (2007) Microbiology , vol.153 , pp. 1842-1851
    • Hendrischk, A.-K.1    Braatsch, S.2    Glaeser, J.3    Klug, G.4
  • 31
    • 84859363040 scopus 로고    scopus 로고
    • Effects of the cryptochrome CryB from Rhodobacter sphaeroides on global gene expression in the dark or blue light or in the presence of singlet oxygen
    • Frühwirth S, Teich K, Klug G, (2012) Effects of the cryptochrome CryB from Rhodobacter sphaeroides on global gene expression in the dark or blue light or in the presence of singlet oxygen. PLoS One 7: e33791.
    • (2012) PLoS One , vol.7
    • Frühwirth, S.1    Teich, K.2    Klug, G.3
  • 32
    • 0035955551 scopus 로고    scopus 로고
    • The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor
    • Newman JD, Anthony JR, Donohue TJ, (2001) The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor. Journal of Molecular Biology 313: 485-499.
    • (2001) Journal of Molecular Biology , vol.313 , pp. 485-499
    • Newman, J.D.1    Anthony, J.R.2    Donohue, T.J.3
  • 33
    • 3342950406 scopus 로고    scopus 로고
    • Interactions between the Rhodobacter sphaeroides ECF sigma factor, σE, and its anti-sigma factor, ChrR
    • Anthony JR, Newman JD, Donohue TJ, (2004) Interactions between the Rhodobacter sphaeroides ECF sigma factor, σE, and its anti-sigma factor, ChrR. Journal of Molecular Biology, J Mol Biol 341: 345-360.
    • (2004) Journal of Molecular Biology, J Mol Biol , vol.341 , pp. 345-360
    • Anthony, J.R.1    Newman, J.D.2    Donohue, T.J.3
  • 34
    • 52949112607 scopus 로고    scopus 로고
    • Organization and evolution of the biological response to singlet oxygen stress
    • Dufour YS, Landick R, Donohue TJ, (2008) Organization and evolution of the biological response to singlet oxygen stress. Journal of Molecular Biology 383: 713-730.
    • (2008) Journal of Molecular Biology , vol.383 , pp. 713-730
    • Dufour, Y.S.1    Landick, R.2    Donohue, T.J.3
  • 35
    • 84866951830 scopus 로고    scopus 로고
    • Convergence of the transcriptional responses to heat shock and singlet oxygen stresses
    • Dufour YS, Imam S, Koo BM, Green HA, Donohue TJ, (2012) Convergence of the transcriptional responses to heat shock and singlet oxygen stresses. PLoS Genet 8: e1002929.
    • (2012) PLoS Genet , vol.8
    • Dufour, Y.S.1    Imam, S.2    Koo, B.M.3    Green, H.A.4    Donohue, T.J.5
  • 36
    • 72049118448 scopus 로고    scopus 로고
    • Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides
    • Berghoff BA, Glaeser J, Sharma CM, Vogel J, Klug G, (2009) Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides. Mol Microbiol 74: 1497-1512.
    • (2009) Mol Microbiol , vol.74 , pp. 1497-1512
    • Berghoff, B.A.1    Glaeser, J.2    Sharma, C.M.3    Vogel, J.4    Klug, G.5
  • 37
    • 79958786333 scopus 로고    scopus 로고
    • Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides
    • Berghoff BA, Glaeser J, Sharma CM, Zobawa M, Lottspeich F, et al. (2011) Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides. Mol Microbiol 80: 1479-1495.
    • (2011) Mol Microbiol , vol.80 , pp. 1479-1495
    • Berghoff, B.A.1    Glaeser, J.2    Sharma, C.M.3    Zobawa, M.4    Lottspeich, F.5
  • 38
    • 84864701507 scopus 로고    scopus 로고
    • Role of the Irr protein in the regulation of iron metabolism in Rhodobacter sphaeroides
    • Peuser V, Remes B, Klug G, (2012) Role of the Irr protein in the regulation of iron metabolism in Rhodobacter sphaeroides. PLoS One 7: e42231.
    • (2012) PLoS One , vol.7
    • Peuser, V.1    Remes, B.2    Klug, G.3
  • 41
    • 70849119931 scopus 로고    scopus 로고
    • Transcriptome complexity in a genome-reduced bacterium
    • Guell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, et al. (2009) Transcriptome complexity in a genome-reduced bacterium. Science 326: 1268-1271.
    • (2009) Science , vol.326 , pp. 1268-1271
    • Guell, M.1    van Noort, V.2    Yus, E.3    Chen, W.H.4    Leigh-Bell, J.5
  • 42
    • 80051732583 scopus 로고    scopus 로고
    • Bacterial transcriptomics: what is beyond the RNA horiz-ome?
    • Guell M, Yus E, Lluch-Senar M, Serrano L, (2011) Bacterial transcriptomics: what is beyond the RNA horiz-ome? Nat Rev Microbiol 9: 658-669.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 658-669
    • Guell, M.1    Yus, E.2    Lluch-Senar, M.3    Serrano, L.4
  • 43
    • 77949425194 scopus 로고    scopus 로고
    • The primary transcriptome of the major human pathogen Helicobacter pylori
    • Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, et al. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464: 250-255.
    • (2010) Nature , vol.464 , pp. 250-255
    • Sharma, C.M.1    Hoffmann, S.2    Darfeuille, F.3    Reignier, J.4    Findeiss, S.5
  • 44
    • 79952174199 scopus 로고    scopus 로고
    • An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803
    • Mitschke J, Georg J, Scholz I, Sharma CM, Dienst D, et al. (2011) An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci U S A 108: 2124-2129.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 2124-2129
    • Mitschke, J.1    Georg, J.2    Scholz, I.3    Sharma, C.M.4    Dienst, D.5
  • 45
    • 0142027814 scopus 로고    scopus 로고
    • Structure and function of the feed-forward loop network motif
    • Mangan S, Alon U, (2003) Structure and function of the feed-forward loop network motif. Proc Natl Acad Sci U S A 100: 11980-11985.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 11980-11985
    • Mangan, S.1    Alon, U.2
  • 46
    • 84867095346 scopus 로고    scopus 로고
    • Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ
    • Mank NN, Berghoff BA, Hermanns YN, Klug G, (2012) Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ. Proc Natl Acad Sci U S A 109: 16306-16311.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 16306-16311
    • Mank, N.N.1    Berghoff, B.A.2    Hermanns, Y.N.3    Klug, G.4
  • 47
    • 0030671073 scopus 로고    scopus 로고
    • A quorum-sensing system in the free-living photosynthetic bacterium Rhodobacter sphaeroides
    • Puskas A, Greenberg EP, Kaplan S, Schaefer AL, (1997) A quorum-sensing system in the free-living photosynthetic bacterium Rhodobacter sphaeroides. J Bacteriol 179: 7530-7537.
    • (1997) J Bacteriol , vol.179 , pp. 7530-7537
    • Puskas, A.1    Greenberg, E.P.2    Kaplan, S.3    Schaefer, A.L.4
  • 48
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in Bacteria
    • Waters LS, Storz G, (2009) Regulatory RNAs in Bacteria. Cell 136: 615-628.
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 49
    • 80051929071 scopus 로고    scopus 로고
    • Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
    • Sharma CM, Papenfort K, Pernitzsch SR, Mollenkopf HJ, Hinton JC, et al. (2011) Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol 81: 1144-1165.
    • (2011) Mol Microbiol , vol.81 , pp. 1144-1165
    • Sharma, C.M.1    Papenfort, K.2    Pernitzsch, S.R.3    Mollenkopf, H.J.4    Hinton, J.C.5
  • 50
    • 3042688696 scopus 로고    scopus 로고
    • Reactive species formed on proteins exposed to singlet oxygen
    • Davies MJ, (2004) Reactive species formed on proteins exposed to singlet oxygen. Photochemical and Photobiological Sciences 3: 17-25.
    • (2004) Photochemical and Photobiological Sciences , vol.3 , pp. 17-25
    • Davies, M.J.1
  • 54
    • 59449085150 scopus 로고    scopus 로고
    • Global analysis of cellular protein translation by pulsed SILAC
    • Schwanhausser B, Gossen M, Dittmar G, Selbach M, (2009) Global analysis of cellular protein translation by pulsed SILAC. Proteomics 9: 205-209.
    • (2009) Proteomics , vol.9 , pp. 205-209
    • Schwanhausser, B.1    Gossen, M.2    Dittmar, G.3    Selbach, M.4
  • 55
    • 0003057316 scopus 로고
    • The culture, general physiology, morphology, and classification of the non-sulfur purple and brown bacteria
    • van Niel CB, (1944) The culture, general physiology, morphology, and classification of the non-sulfur purple and brown bacteria. Bacteriological Reviews 8: 1-118.
    • (1944) Bacteriological Reviews , vol.8 , pp. 1-118
    • van Niel, C.B.1
  • 57
    • 34548178909 scopus 로고    scopus 로고
    • In-gel digestion for mass spectrometric characterization of proteins and proteomes
    • Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M, (2006) In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc 1: 2856-2860.
    • (2006) Nat Protoc , vol.1 , pp. 2856-2860
    • Shevchenko, A.1    Tomas, H.2    Havlis, J.3    Olsen, J.V.4    Mann, M.5
  • 58
    • 0037317228 scopus 로고    scopus 로고
    • Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
    • Rappsilber J, Ishihama Y, Mann M, (2003) Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem 75: 663-670.
    • (2003) Anal Chem , vol.75 , pp. 663-670
    • Rappsilber, J.1    Ishihama, Y.2    Mann, M.3
  • 60
    • 80052769923 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer
    • M111 011015
    • Michalski A, Damoc E, Hauschild JP, Lange O, Wieghaus A, et al. (2011) Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer. Mol Cell Proteomics 10: M111 011015.
    • (2011) Mol Cell Proteomics , vol.10
    • Michalski, A.1    Damoc, E.2    Hauschild, J.P.3    Lange, O.4    Wieghaus, A.5
  • 61
    • 67649400942 scopus 로고    scopus 로고
    • A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
    • Cox J, Matic I, Hilger M, Nagaraj N, Selbach M, et al. (2009) A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics. Nat Protoc 4: 698-705.
    • (2009) Nat Protoc , vol.4 , pp. 698-705
    • Cox, J.1    Matic, I.2    Hilger, M.3    Nagaraj, N.4    Selbach, M.5
  • 62
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 63
    • 0021325997 scopus 로고
    • Synthesis of pigment-binding protein in toluene-treated Rhodopseudomonas capsulata and in cell-free systems
    • Dierstein R, (1984) Synthesis of pigment-binding protein in toluene-treated Rhodopseudomonas capsulata and in cell-free systems. Eur J Biochem 138: 509-518.
    • (1984) Eur J Biochem , vol.138 , pp. 509-518
    • Dierstein, R.1
  • 64
    • 0022599284 scopus 로고
    • Evidence for a coordinate transcriptional control of apha-toxin and protein-a synthesis in Staphylococcus aureus
    • Janzon L, Lofdahl S, Arvidson S, (1986) Evidence for a coordinate transcriptional control of apha-toxin and protein-a synthesis in Staphylococcus aureus. FEMS Microbiology Letters 33: 193-198.
    • (1986) FEMS Microbiology Letters , vol.33 , pp. 193-198
    • Janzon, L.1    Lofdahl, S.2    Arvidson, S.3
  • 65
    • 79955977759 scopus 로고    scopus 로고
    • Response of the photosynthetic bacterium Rhodobacter sphaeroides to iron limitation and the role of a Fur orthologue in this response
    • Peuser V, Metz S, Klug G, (2011) Response of the photosynthetic bacterium Rhodobacter sphaeroides to iron limitation and the role of a Fur orthologue in this response. Environmental Microbiology Reports 3: 397-404.
    • (2011) Environmental Microbiology Reports , vol.3 , pp. 397-404
    • Peuser, V.1    Metz, S.2    Klug, G.3
  • 66
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth GK, Speed T, (2003) Normalization of cDNA microarray data. Methods 31: 265-273.
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 67
    • 0037311919 scopus 로고    scopus 로고
    • TM4: a free, open-source system for microarray data management and analysis
    • Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1    Sharov, V.2    White, J.3    Li, J.4    Liang, W.5
  • 69
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 70
    • 70349667200 scopus 로고    scopus 로고
    • Fast mapping of short sequences with mismatches, insertions and deletions using index structures
    • Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, et al. (2009) Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput Biol 5: e1000502.
    • (2009) PLoS Comput Biol , vol.5
    • Hoffmann, S.1    Otto, C.2    Kurtz, S.3    Sharma, C.M.4    Khaitovich, P.5
  • 71
    • 70349739736 scopus 로고    scopus 로고
    • The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
    • Nicol JW, Helt GA, Blanchard SG Jr, Raja A, Loraine AE, (2009) The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics 25: 2730-2731.
    • (2009) Bioinformatics , vol.25 , pp. 2730-2731
    • Nicol, J.W.1    Helt, G.A.2    Blanchard Jr., S.G.3    Raja, A.4    Loraine, A.E.5
  • 72
    • 70449729343 scopus 로고    scopus 로고
    • Bacterial responses to photo-oxidative stress
    • Ziegelhoffer EC, Donohue TJ, (2009) Bacterial responses to photo-oxidative stress. Nat Rev Microbiol 7: 856-863.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 856-863
    • Ziegelhoffer, E.C.1    Donohue, T.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.