-
1
-
-
84931372758
-
Application of next-generation sequencing technologies for genetic diver-sity analysis in cereals
-
In: Gupta PK, Varshney RK (eds). Springer, Berlin
-
Seifollah K, Alina A, Akhunov E (2013) Application of next-generation sequencing technologies for genetic diver-sity analysis in cereals. In: Gupta PK, Varshney RK (eds) Cereal genomics II. Springer, Berlin
-
(2013)
Cereal Genomics II
-
-
Seifollah, K.1
Alina, A.2
Akhunov, E.3
-
2
-
-
79954672317
-
Genome structural variation discovery and genotyping
-
Alkan C, Coe BP, Eichler EE (2011) Genome structural variation discovery and genotyping. Nat Rev Genet 12:363-376
-
(2011)
Nat Rev Genet
, vol.12
, pp. 363-376
-
-
Alkan, C.1
Coe, B.P.2
Eichler, E.E.3
-
3
-
-
80955133916
-
Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)
-
Allen AM, Barker GLA, Berry ST, Coghill JA, Gwilliam R, Kirby S, Robinson P, Brenchley RC, D'Amore R, McKenzie N, Waite D, Hall A, Bevan M, Hall N, Edwards KJ (2011) Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant Biotechnol J 9(9):1086-1099
-
(2011)
Plant Biotechnol J
, vol.9
, Issue.9
, pp. 1086-1099
-
-
Allen, A.M.1
Barker, G.L.A.2
Berry, S.T.3
Coghill, J.A.4
Gwilliam, R.5
Kirby, S.6
Robinson, P.7
Brenchley, R.C.8
D'amore, R.9
McKenzie, N.10
Waite, D.11
Hall, A.12
Bevan, M.13
Hall, N.14
Edwards, K.J.15
-
4
-
-
65449135172
-
Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data
-
Allentoft ME, Schuster SC, Holdaway RN, Hale ML, McLay E, Oskam C, Gilbert MTP, Spencer P, Willerslev E, Bunce M (2009) Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data. Biotechniques 46:195
-
(2009)
Biotechniques
, vol.46
, pp. 195
-
-
Allentoft, M.E.1
Schuster, S.C.2
Holdaway, R.N.3
Hale, M.L.4
McLay, E.5
Oskam, C.6
Gilbert, M.T.P.7
Spencer, P.8
Willerslev, E.9
Bunce, M.10
-
5
-
-
0034727107
-
An SNP map of the human genome generated by reduced representation shotgun sequencing
-
Altshuler D, Pollara V, Cowles C, Van Etten W, Baldwin J, Linton L, Lander E (2000) An SNP map of the human genome generated by reduced representation shotgun sequencing. Nature 407:513-516
-
(2000)
Nature
, vol.407
, pp. 513-516
-
-
Altshuler, D.1
Pollara, V.2
Cowles, C.3
Van Etten, W.4
Baldwin, J.5
Linton, L.6
Lander, E.7
-
6
-
-
30044435245
-
The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza
-
Ammiraju JSS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, Kurata N, Lambert G, Galbraith DW, Arumuganathan K, Rao K, Walling JG, Gill N, Yu Y, SanMiguel P, Soderlund C, Jackson S, Wing RA (2006) The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res 16:140-147
-
(2006)
Genome Res
, vol.16
, pp. 140-147
-
-
Ammiraju, J.S.S.1
Luo, M.2
Goicoechea, J.L.3
Wang, W.4
Kudrna, D.5
Mueller, C.6
Talag, J.7
Kim, H.8
Sisneros, N.B.9
Blackmon, B.10
Fang, E.11
Tomkins, J.B.12
Brar, D.13
Mackill, D.14
McCouch, S.15
Kurata, N.16
Lambert, G.17
Galbraith, D.W.18
Arumuganathan, K.19
Rao, K.20
Walling, J.G.21
Gill, N.22
Yu, Y.23
Sanmiguel, P.24
Soderlund, C.25
Jackson, S.26
Wing, R.A.27
more..
-
7
-
-
78751521261
-
The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives
-
Ammiraju JSS, Song X, Luo M, Sisneros N, Angelova A, Kudrna D, Kim H, Yu Y, Goicoechea JL, Lorieux M, Kurata N, Brar D, Ware D, Jackson S, Wing RA (2010) The Oryza BAC resource: a genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives. Breed Sci 60:536-543
-
(2010)
Breed Sci
, vol.60
, pp. 536-543
-
-
Ammiraju, J.S.S.1
Song, X.2
Luo, M.3
Sisneros, N.4
Angelova, A.5
Kudrna, D.6
Kim, H.7
Yu, Y.8
Goicoechea, J.L.9
Lorieux, M.10
Kurata, N.11
Brar, D.12
Ware, D.13
Jackson, S.14
Wing, R.A.15
-
8
-
-
65349159741
-
New technologies for ultra-high throughput genotyping in plants
-
In: Somers D, Langridge P, Gustafson J (eds). Humana Press, New York
-
Appleby N, Edwards D, Batley J (2009) New technologies for ultra-high throughput genotyping in plants. In: Somers D, Langridge P, Gustafson J (eds) Plant genomics. Humana Press, New York, pp 19-40
-
(2009)
Plant Genomics
, pp. 19-40
-
-
Appleby, N.1
Edwards, D.2
Batley, J.3
-
9
-
-
0030929025
-
Microsatellite variation and evolution in the Mimulus guttatus species complex with contrasting mating systems
-
Awadalla P, Ritland K (1997) Microsatellite variation and evolution in the Mimulus guttatus species complex with contrasting mating systems. Mol Biol Evol 14:1023-1034
-
(1997)
Mol Biol Evol
, vol.14
, pp. 1023-1034
-
-
Awadalla, P.1
Ritland, K.2
-
10
-
-
84863393432
-
Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome
-
Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JDG, Varshney RK (2012) Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. Am J Bot 99:186-192
-
(2012)
Am J Bot
, vol.99
, pp. 186-192
-
-
Azam, S.1
Thakur, V.2
Ruperao, P.3
Shah, T.4
Balaji, J.5
Amindala, B.6
Farmer, A.D.7
Studholme, D.J.8
May, G.D.9
Edwards, D.10
Jones, J.D.G.11
Varshney, R.K.12
-
11
-
-
34548128406
-
SNP discovery via 454 transcriptome sequencing
-
Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS (2007) SNP discovery via 454 transcriptome sequencing. Plant J 51:910-918
-
(2007)
Plant J
, vol.51
, pp. 910-918
-
-
Barbazuk, W.B.1
Emrich, S.J.2
Chen, H.D.3
Li, L.4
Schnable, P.S.5
-
12
-
-
0344838601
-
Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP
-
Barker G, Batley J, O'Sullivan H, Edwards KJ, Edwards D (2003) Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP. Bioinformatics 19:421-422
-
(2003)
Bioinformatics
, vol.19
, pp. 421-422
-
-
Barker, G.1
Batley, J.2
O'sullivan, H.3
Edwards, K.J.4
Edwards, D.5
-
13
-
-
55949119417
-
SNP applications in plants
-
In: Oraguzie N, Rikkerink E, Gardiner S, De Silva H (eds). Springer, New York
-
Batley J, Edwards D (2007) SNP applications in plants. In: Oraguzie N, Rikkerink E, Gardiner S, De Silva H (eds) Association mapping in plants. Springer, New York, pp 95-102
-
(2007)
Association Mapping in Plants
, pp. 95-102
-
-
Batley, J.1
Edwards, D.2
-
14
-
-
70249108523
-
Genome sequence data: Management, storage, and visualization
-
Batley J, Edwards D (2009a) Genome sequence data: management, storage, and visualization. Biotechniques 46:333-336
-
(2009)
Biotechniques
, vol.46
, pp. 333-336
-
-
Batley, J.1
Edwards, D.2
-
15
-
-
78649302767
-
Mining for single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) molecular genetic markers
-
In: Posada D (ed). Humana Press, New York
-
Batley J, Edwards D (2009b) Mining for single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) molecular genetic markers. In: Posada D (ed) Bioinformatics for DNA sequence analysis. Humana Press, New York, pp 303-322
-
(2009)
Bioinformatics for DNA Sequence Analysis
, pp. 303-322
-
-
Batley, J.1
Edwards, D.2
-
16
-
-
0037986743
-
Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data
-
Batley J, Barker G, O'Sullivan H, Edwards KJ, Edwards D (2003a) Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data. Plant Physiol 132:84-91
-
(2003)
Plant Physiol
, vol.132
, pp. 84-91
-
-
Batley, J.1
Barker, G.2
O'sullivan, H.3
Edwards, K.J.4
Edwards, D.5
-
17
-
-
0037293160
-
A high-throughput SNuPE assay for genotyping SNPs in the flanking regions of Zea mays sequence tagged simple sequence repeats
-
Batley J, Mogg R, Edwards D, O'Sullivan H, Edwards KJ (2003b) A high-throughput SNuPE assay for genotyping SNPs in the flanking regions of Zea mays sequence tagged simple sequence repeats. Mol Breeding 11:111-120
-
(2003)
Mol Breeding
, vol.11
, pp. 111-120
-
-
Batley, J.1
Mogg, R.2
Edwards, D.3
O'sullivan, H.4
Edwards, K.J.5
-
18
-
-
40549128392
-
Automated discovery of single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) molecular genetic markers
-
In: Edwards D (ed). Humana Press, New York
-
Batley J, Jewell E, Edwards D (2007) Automated discovery of single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) molecular genetic markers. In: Edwards D (ed) Plant bioinformatics. Humana Press, New York, pp 473-494
-
(2007)
Plant Bioinformatics
, pp. 473-494
-
-
Batley, J.1
Jewell, E.2
Edwards, D.3
-
19
-
-
79961167445
-
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS
-
Berkman PJ, Skarshewski A, Lorenc MT, Lai K, Duran C, Ling EYS, Stiller J, Smits L, Imelfort M, Manoli S, McKenzie M, Kubalakova M, Simkova H, Batley J, Fleury D, Dolezel J, Edwards D (2011) Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS. Plant Biotechnol J 9:768-775
-
(2011)
Plant Biotechnol J
, vol.9
, pp. 768-775
-
-
Berkman, P.J.1
Skarshewski, A.2
Lorenc, M.T.3
Lai, K.4
Duran, C.5
Ling, E.Y.S.6
Stiller, J.7
Smits, L.8
Imelfort, M.9
Manoli, S.10
McKenzie, M.11
Kubalakova, M.12
Simkova, H.13
Batley, J.14
Fleury, D.15
Dolezel, J.16
Edwards, D.17
-
20
-
-
84858592204
-
Next generation sequencing applications for wheat crop improvement
-
Berkman PJ, Lai K, Lorenc MT, Edwards D (2012a) Next generation sequencing applications for wheat crop improvement. Am J Bot 99:365-371
-
(2012)
Am J Bot
, vol.99
, pp. 365-371
-
-
Berkman, P.J.1
Lai, K.2
Lorenc, M.T.3
Edwards, D.4
-
21
-
-
84860842759
-
Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation
-
Berkman PJ, Skarshewski A, Manoli S, Lorenc MT, Stiller J, Smits L, Lai K, Campbell E, Kubalakova M, Simkova H, Batley J, Dolezel J, Hernandez P, Edwards D (2012b) Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theor Appl Genet 124:423-432
-
(2012)
Theor Appl Genet
, vol.124
, pp. 423-432
-
-
Berkman, P.J.1
Skarshewski, A.2
Manoli, S.3
Lorenc, M.T.4
Stiller, J.5
Smits, L.6
Lai, K.7
Campbell, E.8
Kubalakova, M.9
Simkova, H.10
Batley, J.11
Dolezel, J.12
Hernandez, P.13
Edwards, D.14
-
22
-
-
43149107930
-
Quality scores and SNP detection in sequencing-by-synthesis systems
-
Brockman W, Alvarez P, Young S, Garber M, Giannoukos G, Lee WL, Russ C, Lander ES, Nusbaum C, Jaffe DB (2008) Quality scores and SNP detection in sequencing-by-synthesis systems. Genome Res 18:763-770
-
(2008)
Genome Res
, vol.18
, pp. 763-770
-
-
Brockman, W.1
Alvarez, P.2
Young, S.3
Garber, M.4
Giannoukos, G.5
Lee, W.L.6
Russ, C.7
Lander, E.S.8
Nusbaum, C.9
Jaffe, D.B.10
-
23
-
-
53849099359
-
Single nucleotide polymorphism genotyping in plants
-
In: Oraguzie N, Rikkerink E, Gardiner S, De Silva H (eds) Springer, New York
-
Chagné D, Batley J, Edwards D, Forster JW (2007) Single nucleotide polymorphism genotyping in plants. In: Oraguzie N, Rikkerink E, Gardiner S, De Silva H (eds) Association mapping in plants. Springer, New York, pp 77-94
-
(2007)
Association Mapping in Plants
, pp. 77-94
-
-
Chagné, D.1
Batley, J.2
Edwards, D.3
Forster, J.W.4
-
24
-
-
0038744804
-
SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines
-
Ching A, Caldwell K, Jung M, Dolan M, Smith O, Tingey S, Morgante M, Rafalski A (2002) SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. BMC Genet 3:19
-
(2002)
BMC Genet
, vol.3
, pp. 19
-
-
Ching, A.1
Caldwell, K.2
Jung, M.3
Dolan, M.4
Smith, O.5
Tingey, S.6
Morgante, M.7
Rafalski, A.8
-
25
-
-
73449108400
-
Development and implementation of high-throughput SNP genotyping in barley
-
Close T, Bhat P, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson J, Wanamaker S, Bozdag S, Roose M, Moscou M, Chao S, Varshney R, Szucs P, Sato K, Hayes P, Matthews D, Kleinhofs A, Muehlbauer G, DeYoung J, Marshall D, Madishetty K, Fenton R, Condamine P, Graner A, Waugh R (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582
-
(2009)
BMC Genomics
, vol.10
, pp. 582
-
-
Close, T.1
Bhat, P.2
Lonardi, S.3
Wu, Y.4
Rostoks, N.5
Ramsay, L.6
Druka, A.7
Stein, N.8
Svensson, J.9
Wanamaker, S.10
Bozdag, S.11
Roose, M.12
Moscou, M.13
Chao, S.14
Varshney, R.15
Szucs, P.16
Sato, K.17
Hayes, P.18
Matthews, D.19
Kleinhofs, A.20
Muehlbauer, G.21
Deyoung, J.22
Marshall, D.23
Madishetty, K.24
Fenton, R.25
Condamine, P.26
Graner, A.27
Waugh, R.28
more..
-
26
-
-
58149186472
-
AutoSNPdb: An annotated single nucleotide polymorphism database for crop plants
-
Duran C, Appleby N, Clark T, Wood D, Imelfort M, Batley J, Edwards D (2009a) AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants. Nucleic Acids Res 37:D951-D953
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D951-D953
-
-
Duran, C.1
Appleby, N.2
Clark, T.3
Wood, D.4
Imelfort, M.5
Batley, J.6
Edwards, D.7
-
27
-
-
65349187578
-
Molecular genetic markers: Discovery, applications, data storage and visualisation
-
Duran C, Appleby N, Edwards D, Batley J (2009b) Molecular genetic markers: discovery, applications, data storage and visualisation. Curr Bioinform 4:16-27
-
(2009)
Curr Bioinform
, vol.4
, pp. 16-27
-
-
Duran, C.1
Appleby, N.2
Edwards, D.3
Batley, J.4
-
28
-
-
64749116576
-
Single nucleotide polymorphism discovery in barley using autoSNPdb
-
Duran C, Appleby N, Vardy M, Imelfort M, Edwards D, Batley J (2009c) Single nucleotide polymorphism discovery in barley using autoSNPdb. Plant Biotechnol J 7:326-333
-
(2009)
Plant Biotechnol J
, vol.7
, pp. 326-333
-
-
Duran, C.1
Appleby, N.2
Vardy, M.3
Imelfort, M.4
Edwards, D.5
Batley, J.6
-
29
-
-
77950481535
-
CMap3D: A 3D visualisation tool for comparative genetic maps
-
Duran C, Boskovic Z, Imelfort M, Batley J, Hamilton NA, Edwards D (2010a) CMap3D: a 3D visualisation tool for comparative genetic maps. Bioinformatics 26:273-274
-
(2010)
Bioinformatics
, vol.26
, pp. 273-274
-
-
Duran, C.1
Boskovic, Z.2
Imelfort, M.3
Batley, J.4
Hamilton, N.A.5
Edwards, D.6
-
30
-
-
78649283677
-
Future tools for association mapping in crop plants
-
Duran C, Eales D, Marshall D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Appleby N, Batley J, Basford K, Edwards D (2010b) Future tools for association mapping in crop plants. Genome 53:1017-1023
-
(2010)
Genome
, vol.53
, pp. 1017-1023
-
-
Duran, C.1
Eales, D.2
Marshall, D.3
Imelfort, M.4
Stiller, J.5
Berkman, P.J.6
Clark, T.7
McKenzie, M.8
Appleby, N.9
Batley, J.10
Basford, K.11
Edwards, D.12
-
31
-
-
84891352365
-
Bioinformatics and plant genomics for staple crops improvement
-
In: Kang MS, Priyadarshan PM (eds) Blackwell, Oxford
-
Edwards D (2007) Bioinformatics and plant genomics for staple crops improvement. In: Kang MS, Priyadarshan PM (eds) Breeding major food staples. Blackwell, Oxford, pp 93-106
-
(2007)
Breeding Major Food Staples
, pp. 93-106
-
-
Edwards, D.1
-
32
-
-
84921790498
-
Wheat bioinformatics
-
In: Bonjean A, Angus W, Van Ginkel M (eds) Lavoisier, France
-
Edwards D (2011) Wheat bioinformatics. In: Bonjean A, Angus W, Van Ginkel M (eds) The world wheat book. Lavoisier, France, pp 851-875
-
(2011)
The World Wheat Book
, pp. 851-875
-
-
Edwards, D.1
-
33
-
-
1942502343
-
Plant bioinformatics: From genome to phenome
-
Edwards D, Batley J (2004) Plant bioinformatics: from genome to phenome. Trends Biotechnol 22:232-237
-
(2004)
Trends Biotechnol
, vol.22
, pp. 232-237
-
-
Edwards, D.1
Batley, J.2
-
34
-
-
78649263698
-
Bioinformatics: Fundamentals and applications in plant genetics, mapping and breeding
-
In: Kole C, Abbott AG (eds) Science Publishers Inc., USA
-
Edwards D, Batley J (2008) Bioinformatics: fundamentals and applications in plant genetics, mapping and breeding. In: Kole C, Abbott AG (eds) Principles and practices of plant genomics. Science Publishers Inc., USA, pp 269-302
-
(2008)
Principles and Practices of Plant Genomics
, pp. 269-302
-
-
Edwards, D.1
Batley, J.2
-
35
-
-
71949131301
-
Plant genome sequencing: Applications for crop improvement
-
Edwards D, Batley J (2010) Plant genome sequencing: applications for crop improvement. Plant Biotechnol J 7:1-8
-
(2010)
Plant Biotechnol J
, vol.7
, pp. 1-8
-
-
Edwards, D.1
Batley, J.2
-
36
-
-
84863578286
-
Genome sequencing initiatives
-
In: Edwards D, Parkin IAP, Batley J (eds) Science Publishers Inc., New Hampshire
-
Edwards D, Wang X (2012) Genome Sequencing Initiatives. In: Edwards D, Parkin IAP, Batley J (eds) Genetics, genomics and breeding of Oilseed Brassicas. Science Publishers Inc., New Hampshire, pp 152-157
-
(2012)
Genetics, Genomics and Breeding of Oilseed Brassicas
, pp. 152-157
-
-
Edwards, D.1
Wang, X.2
-
37
-
-
0030015122
-
Microsatellite libraries enriched for several microsatellite sequences in plants
-
Edwards KJ, Barker JHA, Daly A, Jones C, Karp A (1996) Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques 20:758
-
(1996)
Biotechniques
, vol.20
, pp. 758
-
-
Edwards, K.J.1
Barker, J.H.A.2
Daly, A.3
Jones, C.4
Karp, A.5
-
38
-
-
49349106974
-
What are SNPs?
-
In: Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva HN (eds) Springer, New York
-
Edwards D, Forster JW, Chagné D, Batley J (2007a) What are SNPs? In: Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva HN (eds) Association mapping in plants. Springer, New York, pp 41-52
-
(2007)
Association Mapping in Plants
, pp. 41-52
-
-
Edwards, D.1
Forster, J.W.2
Chagné, D.3
Batley, J.4
-
39
-
-
51349127904
-
Single nucleotide polymorphism discovery
-
In: Oraguzie N, Rikkerink E, Gardiner S, De Silva H (eds) Springer, New York
-
Edwards D, Forster JW, Cogan NOI, Batley J, Chagné D (2007b) Single nucleotide polymorphism discovery. In: Oraguzie N, Rikkerink E, Gardiner S, De Silva H (eds) Association mapping in plants. Springer, New York, pp 53-76
-
(2007)
Association Mapping in Plants
, pp. 53-76
-
-
Edwards, D.1
Forster, J.W.2
Cogan, N.O.I.3
Batley, J.4
Chagné, D.5
-
41
-
-
84871906959
-
Accessing complex crop genomes with next-generation sequencing
-
Edwards D, Batley J, Snowdon R (2012a) Accessing complex crop genomes with next-generation sequencing. Theor Appl Genet 126:1-11
-
(2012)
Theor Appl Genet
, vol.126
, pp. 1-11
-
-
Edwards, D.1
Batley, J.2
Snowdon, R.3
-
42
-
-
84863590625
-
Preface: Advances in DNA sequencing accelerating plant biotechnology
-
Edwards D, Henry RJ, Edwards KJ (2012b) Preface: advances in DNA sequencing accelerating plant biotechnology. Plant Biotechnol J 10:621-622
-
(2012)
Plant Biotechnol J
, vol.10
, pp. 621-622
-
-
Edwards, D.1
Henry, R.J.2
Edwards, K.J.3
-
43
-
-
84863589392
-
Bread matters: A national initiative to profile the genetic diversity of Australian wheat
-
Edwards D, Wilcox S, Barrero RA, Fleury D, Cavanagh CR, Forrest KL, Hayden MJ, Moolhuijzen P, Gagnere GK, Bellgard MI, Lorenc MT, Shang CA, Baumann U, Taylor JM, Morell MK, Langridge P, Appels R, Fitzgerald A (2012c) Bread matters: a national initiative to profile the genetic diversity of Australian wheat. Plant Biotechnol J 10:703-708
-
(2012)
Plant Biotechnol J
, vol.10
, pp. 703-708
-
-
Edwards, D.1
Wilcox, S.2
Barrero, R.A.3
Fleury, D.4
Cavanagh, C.R.5
Forrest, K.L.6
Hayden, M.J.7
Moolhuijzen, P.8
Gagnere, G.K.9
Bellgard, M.I.10
Lorenc, M.T.11
Shang, C.A.12
Baumann, U.13
Taylor, J.M.14
Morell, M.K.15
Langridge, P.16
Appels, R.17
Fitzgerald, A.18
-
44
-
-
84859643160
-
Oxford nanopore announcement sets sequencing sector abuzz
-
Eisenstein M (2012) Oxford nanopore announcement sets sequencing sector abuzz. Nat Biotech 30:295-296
-
(2012)
Nat Biotech
, vol.30
, pp. 295-296
-
-
Eisenstein, M.1
-
45
-
-
25844507219
-
Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries
-
Emberton J, Ma J, Yuan Y, SanMiguel P, Bennetzen JL (2005) Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries. Genome Res 15:1441-1446
-
(2005)
Genome Res
, vol.15
, pp. 1441-1446
-
-
Emberton, J.1
Ma, J.2
Yuan, Y.3
Sanmiguel, P.4
Bennetzen, J.L.5
-
46
-
-
4644353880
-
An SNP resource for rice genetics and breeding based on subspecies Indica and Japonica genome alignments
-
Feltus FA, Wan J, Schulze SR, Estill JC, Jiang N, Paterson AH (2004) An SNP resource for rice genetics and breeding based on subspecies Indica and Japonica genome alignments. Genome Res 14:1812-1819
-
(2004)
Genome Res
, vol.14
, pp. 1812-1819
-
-
Feltus, F.A.1
Wan, J.2
Schulze, S.R.3
Estill, J.C.4
Jiang, N.5
Paterson, A.H.6
-
47
-
-
77952865614
-
Repeat subtraction-mediated sequence capture from a complex genome
-
Fu Y, Springer NM, Gerhardt DJ, Ying K, Yeh C-T, Wu W, Swanson-Wagner R, D'Ascenzo M, Millard T, Freeberg L, Aoyama N, Kitzman J, Burgess D, Richmond T, Albert TJ, Barbazuk WB, Jeddeloh JA, Schnable PS (2010) Repeat subtraction-mediated sequence capture from a complex genome. Plant J 62:898-909
-
(2010)
Plant J
, vol.62
, pp. 898-909
-
-
Fu, Y.1
Springer, N.M.2
Gerhardt, D.J.3
Ying, K.4
Yeh, C.-T.5
Wu, W.6
Swanson-Wagner, R.7
D'ascenzo, M.8
Millard, T.9
Freeberg, L.10
Aoyama, N.11
Kitzman, J.12
Burgess, D.13
Richmond, T.14
Albert, T.J.15
Barbazuk, W.B.16
Jeddeloh, J.A.17
Schnable, P.S.18
-
48
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn TC (2011) Field guide to next-generation DNA sequencers. Mol Ecol Resour 11:759-769
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
49
-
-
70450204614
-
A first-generation haplotype map of maize
-
Gore M, Chia J, Elshire R, Sun Q, Ersoz E, Hurwitz B, Peiffer J, McMullen M, Grills G, Ross-Ibarra J (2009) A first-generation haplotype map of maize. Science 326:1115-1117
-
(2009)
Science
, vol.326
, pp. 1115-1117
-
-
Gore, M.1
Chia, J.2
Elshire, R.3
Sun, Q.4
Ersoz, E.5
Hurwitz, B.6
Peiffer, J.7
McMullen, M.8
Grills, G.9
Ross-Ibarra, J.10
-
50
-
-
53949113588
-
Single-molecule DNA sequencing technologies for future genomics research
-
Gupta PK (2008) Single-molecule DNA sequencing technologies for future genomics research. Trends Biotechnol 26:602-611
-
(2008)
Trends Biotechnol
, vol.26
, pp. 602-611
-
-
Gupta, P.K.1
-
51
-
-
0028311787
-
Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats
-
Gupta M, Chyi YS, Romeroseverson J, Owen JL (1994) Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats. Theor Appl Genet 89:998-1006
-
(1994)
Theor Appl Genet
, vol.89
, pp. 998-1006
-
-
Gupta, M.1
Chyi, Y.S.2
Romeroseverson, J.3
Owen, J.L.4
-
52
-
-
0012339256
-
Single nucleotide polymorphisms: A new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants
-
Gupta PK, Roy JK, Prasad M (2001) Single nucleotide polymorphisms: a new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants. Curr Sci 80:524-535
-
(2001)
Curr Sci
, vol.80
, pp. 524-535
-
-
Gupta, P.K.1
Roy, J.K.2
Prasad, M.3
-
53
-
-
0347634449
-
Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat
-
Gupta PK, Rustgi S, Sharma S, Singh R, Kumar N, Balyan HS (2003) Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol Genet Genomics 270:315-323
-
(2003)
Mol Genet Genomics
, vol.270
, pp. 315-323
-
-
Gupta, P.K.1
Rustgi, S.2
Sharma, S.3
Singh, R.4
Kumar, N.5
Balyan, H.S.6
-
54
-
-
84901340591
-
Array-based high-throughput DNA markers and genotyping platforms for cereal genetics and genomics
-
In: Gupta PK, Varshney RK (eds). Springer, Berlin
-
Gupta PK, Rustgi S, Mir RR (2013) Array-based high-throughput DNA markers and genotyping platforms for cereal genetics and genomics. In: Gupta PK, Varshney RK (eds) Cereal genomics II. Springer, Berlin
-
(2013)
Cereal Genomics II
-
-
Gupta, P.K.1
Rustgi, S.2
Mir, R.R.3
-
55
-
-
80053354042
-
From RNA-seq to large-scale genotyping-genomics resources for rye (Secale cereale L.)
-
Haseneyer G, Schmutzer T, Seidel M, Zhou R, Mascher M, Schon C-C, Taudien S, Scholz U, Stein N, Mayer K, Bauer E (2011) From RNA-seq to large-scale genotyping-genomics resources for rye (Secale cereale L.). BMC Plant Biol 11:131
-
(2011)
BMC Plant Biol
, vol.11
, pp. 131
-
-
Haseneyer, G.1
Schmutzer, T.2
Seidel, M.3
Zhou, R.4
Mascher, M.5
Schon, C.-C.6
Taudien, S.7
Scholz, U.8
Stein, N.9
Mayer, K.10
Bauer, E.11
-
56
-
-
66449120272
-
High-throughput genotyping by whole-genome resequencing
-
Huang X, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T, Dong G, Sang T, Han B (2009) High-throughput genotyping by whole-genome resequencing. Genome Res 19:1068-1076
-
(2009)
Genome Res
, vol.19
, pp. 1068-1076
-
-
Huang, X.1
Feng, Q.2
Qian, Q.3
Zhao, Q.4
Wang, L.5
Wang, A.6
Guan, J.7
Fan, D.8
Weng, Q.9
Huang, T.10
Dong, G.11
Sang, T.12
Han, B.13
-
57
-
-
78049332150
-
Genome-wide association studies of 14 agronomic traits in rice landraces
-
Huang XH, Wei XH, Sang T, Zhao QA, Feng Q, Zhao Y, Li CY, Zhu CR, Lu TT, Zhang ZW, Li M, Fan DL, Guo YL, Wang A, Wang L, Deng LW, Li WJ, Lu YQ, Weng QJ, Liu KY, Huang T, Zhou TY, Jing YF, Li W, Lin Z, Buckler ES, Qian QA, Zhang QF, Li JY, Han B (2010) Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet 42:U961-U976
-
(2010)
Nat Genet
, vol.42
, pp. U961-U976
-
-
Huang, X.H.1
Wei, X.H.2
Sang, T.3
Zhao, Q.A.4
Feng, Q.5
Zhao, Y.6
Li, C.Y.7
Zhu, C.R.8
Lu, T.T.9
Zhang, Z.W.10
Li, M.11
Fan, D.L.12
Guo, Y.L.13
Wang, A.14
Wang, L.15
Deng, L.W.16
Li, W.J.17
Lu, Y.Q.18
Weng, Q.J.19
Liu, K.Y.20
Huang, T.21
Zhou, T.Y.22
Jing, Y.F.23
Li, W.24
Lin, Z.25
Buckler, E.S.26
Qian, Q.A.27
Zhang, Q.F.28
Li, J.Y.29
Han, B.30
more..
-
58
-
-
76749130701
-
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
-
Hyten D, Cannon S, Song Q, Weeks N, Fickus E, Shoemaker R, Specht J, Farmer A, May G, Cregan P (2010a) High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics 11:38
-
(2010)
BMC Genomics
, vol.11
, pp. 38
-
-
Hyten, D.1
Cannon, S.2
Song, Q.3
Weeks, N.4
Fickus, E.5
Shoemaker, R.6
Specht, J.7
Farmer, A.8
May, G.9
Cregan, P.10
-
59
-
-
77955527989
-
High-throughput SNP discovery and assay development in common bean
-
Hyten D, Song Q, Fickus E, Quigley C, Lim J, Choi I, Hwang E, Pastor-Corrales M, Cregan P (2010b) High-throughput SNP discovery and assay development in common bean. BMC Genomics 11:475
-
(2010)
BMC Genomics
, vol.11
, pp. 475
-
-
Hyten, D.1
Song, Q.2
Fickus, E.3
Quigley, C.4
Lim, J.5
Choi, I.6
Hwang, E.7
Pastor-Corrales, M.8
Cregan, P.9
-
60
-
-
70450169667
-
De novo sequencing of plant genomes using second-generation technologies
-
Imelfort M, Edwards D (2009) De novo sequencing of plant genomes using second-generation technologies. Briefings Bioinf 10:609-618
-
(2009)
Briefings Bioinf
, vol.10
, pp. 609-618
-
-
Imelfort, M.1
Edwards, D.2
-
61
-
-
65349182945
-
Genome sequencing approaches and successes
-
In: Somers D, Langridge P, Gustafson J (eds) Humana Press, New York
-
Imelfort M, Batley J, Grimmond S, Edwards D (2009a) Genome sequencing approaches and successes. In: Somers D, Langridge P, Gustafson J (eds) Plant genomics. Humana Press, New York, pp 345-358
-
(2009)
Plant Genomics
, pp. 345-358
-
-
Imelfort, M.1
Batley, J.2
Grimmond, S.3
Edwards, D.4
-
62
-
-
64749113018
-
Discovering genetic polymorphisms in nextgeneration sequencing data
-
Imelfort M, Duran C, Batley J, Edwards D (2009b) Discovering genetic polymorphisms in nextgeneration sequencing data. Plant Biotechnol J 7:312-317
-
(2009)
Plant Biotechnol J
, vol.7
, pp. 312-317
-
-
Imelfort, M.1
Duran, C.2
Batley, J.3
Edwards, D.4
-
63
-
-
33747854965
-
SSR Primer and SSR Taxonomy Tree: Biome SSR discovery
-
Jewell E, Robinson A, Savage D, Erwin T, Love CG, Lim GAC, Li X, Batley J, Spangenberg GC, Edwards D (2006) SSR Primer and SSR Taxonomy Tree: biome SSR discovery. Nucleic Acids Res 34:W656-W659
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W656-W659
-
-
Jewell, E.1
Robinson, A.2
Savage, D.3
Erwin, T.4
Love, C.G.5
Lim, G.A.C.6
Li, X.7
Batley, J.8
Spangenberg, G.C.9
Edwards, D.10
-
64
-
-
0031081111
-
Simple sequence repeats as a source of quantitative genetic variation
-
Kashi Y, King D, Soller M (1997) Simple sequence repeats as a source of quantitative genetic variation. Trends Genet 13:74-78
-
(1997)
Trends Genet
, vol.13
, pp. 74-78
-
-
Kashi, Y.1
King, D.2
Soller, M.3
-
65
-
-
0034946803
-
Differential distribution of simple sequence repeats in eukaryotic genome sequences
-
Katti MV, Ranjekar PK, Gupta VS (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18:1161-1167
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1161-1167
-
-
Katti, M.V.1
Ranjekar, P.K.2
Gupta, V.S.3
-
66
-
-
0142107475
-
Snipping polymorphisms from large EST collections in barley (Hordeum vulgareL.)
-
Kota R, Rudd S, Facius A, Kolesov G, Thiel T, Zhang H, Stein N, Mayer K, Graner A (2003) Snipping polymorphisms from large EST collections in barley (Hordeum vulgareL.). Mol Genet Genomics 270:24-33
-
(2003)
Mol Genet Genomics
, vol.270
, pp. 24-33
-
-
Kota, R.1
Rudd, S.2
Facius, A.3
Kolesov, G.4
Thiel, T.5
Zhang, H.6
Stein, N.7
Mayer, K.8
Graner, A.9
-
67
-
-
0035206133
-
Applications of retrotransposons as genetic tools in plant biology
-
Kumar A, Hirochika H (2001) Applications of retrotransposons as genetic tools in plant biology. Trends Plant Sci 6:127-134
-
(2001)
Trends Plant Sci
, vol.6
, pp. 127-134
-
-
Kumar, A.1
Hirochika, H.2
-
68
-
-
78049338441
-
Genome-wide patterns of genetic variation among elite maize inbred lines
-
Lai JS, Li RQ, Xu X, Jin WW, Xu ML, Zhao HN, Xiang ZK, Song WB, Ying K, Zhang M, Jiao YP, Ni PX, Zhang JG, Li D, Guo XS, Ye KX, Jian M, Wang B, Zheng HS, Liang HQ, Zhang XQ, Wang SC, Chen SJ, Li JS, Fu Y, Springer NM, Yang HM, Wang JA, Dai JR, Schnable PS, Wang J (2010) Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet 42:U1027-U1158
-
(2010)
Nat Genet
, vol.42
, pp. U1027-U1158
-
-
Lai, J.S.1
Li, R.Q.2
Xu, X.3
Jin, W.W.4
Xu, M.L.5
Zhao, H.N.6
Xiang, Z.K.7
Song, W.B.8
Ying, K.9
Zhang, M.10
Jiao, Y.P.11
Ni, P.X.12
Zhang, J.G.13
Li, D.14
Guo, X.S.15
Ye, K.X.16
Jian, M.17
Wang, B.18
Zheng, H.S.19
Liang, H.Q.20
Zhang, X.Q.21
Wang, S.C.22
Chen, S.J.23
Li, J.S.24
Fu, Y.25
Springer, N.M.26
Yang, H.M.27
Wang, J.A.28
Dai, J.R.29
Schnable, P.S.30
Wang, J.31
more..
-
69
-
-
84857205586
-
WheatGenome.info: An integrated database and portal for wheat genome information
-
Lai K, Berkman PJ, Lorenc MT, Duran C, Smits L, Manoli S, Stiller J, Edwards D (2012a) WheatGenome.info: an integrated database and portal for wheat genome information. Plant Cell Physiol 53:1-7
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 1-7
-
-
Lai, K.1
Berkman, P.J.2
Lorenc, M.T.3
Duran, C.4
Smits, L.5
Manoli, S.6
Stiller, J.7
Edwards, D.8
-
70
-
-
84863596169
-
Single nucleotide polymorphism discovery from wheat next-generation sequence data
-
Lai K, Duran C, Berkman PJ, Lorenc MT, Stiller J, Manoli S, Hayden MJ, Forrest KL, Fleury D, Baumann U, Zander M, Mason AS, Batley J, Edwards D (2012b) Single nucleotide polymorphism discovery from wheat next-generation sequence data. Plant Biotechnol J 10:743-749
-
(2012)
Plant Biotechnol J
, vol.10
, pp. 743-749
-
-
Lai, K.1
Duran, C.2
Berkman, P.J.3
Lorenc, M.T.4
Stiller, J.5
Manoli, S.6
Hayden, M.J.7
Forrest, K.L.8
Fleury, D.9
Baumann, U.10
Zander, M.11
Mason, A.S.12
Batley, J.13
Edwards, D.14
-
71
-
-
84863574813
-
Genomic databases for crop improvement
-
Lai K, Lorenc MT, Edwards D (2012c) Genomic databases for crop improvement. Agronomy 2:62-73
-
(2012)
Agronomy
, vol.2
, pp. 62-73
-
-
Lai, K.1
Lorenc, M.T.2
Edwards, D.3
-
72
-
-
34547488367
-
Molecular markers: Actual and potential contributions to wheat genome characterization and breeding
-
Landjeva S, Korzun V, Borner A (2007) Molecular markers: actual and potential contributions to wheat genome characterization and breeding. Euphytica 156:271-296
-
(2007)
Euphytica
, vol.156
, pp. 271-296
-
-
Landjeva, S.1
Korzun, V.2
Borner, A.3
-
73
-
-
84863126127
-
Bioinformatics tools and databases for analysis of next generation sequence data
-
Lee H, Lai K, Lorenc MT, Imelfort M, Duran C, Edwards D (2012) Bioinformatics tools and databases for analysis of next generation sequence data. Briefings Funct Genom 2:12-24
-
(2012)
Briefings Funct Genom
, vol.2
, pp. 12-24
-
-
Lee, H.1
Lai, K.2
Lorenc, M.T.3
Imelfort, M.4
Duran, C.5
Edwards, D.6
-
74
-
-
84864920004
-
Comparison of next-generation sequencing systems
-
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (2012) Comparison of next-generation sequencing systems. J Biomed Biotechnol 2012:11
-
(2012)
J Biomed Biotechnol
, vol.2012
, pp. 11
-
-
Liu, L.1
Li, Y.2
Li, S.3
Hu, N.4
He, Y.5
Pong, R.6
Lin, D.7
Lu, L.8
Law, M.9
-
75
-
-
84871914205
-
Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP
-
Lorenc MT, Hayashi S, Stiller J, Lee H, Manoli S, Ruperao P, Visendi P, Berkman PJ, Lai K, Batley J, Edwards D (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology 1:370-382
-
(2012)
Biology
, vol.1
, pp. 370-382
-
-
Lorenc, M.T.1
Hayashi, S.2
Stiller, J.3
Lee, H.4
Manoli, S.5
Ruperao, P.6
Visendi, P.7
Berkman, P.J.8
Lai, K.9
Batley, J.10
Edwards, D.11
-
76
-
-
9244230702
-
Applied computational tools for crop genome research
-
Love CG, Batley J, Edwards D (2003) Applied computational tools for crop genome research. J Plant Biotechnol 5:193-195
-
(2003)
J Plant Biotechnol
, vol.5
, pp. 193-195
-
-
Love, C.G.1
Batley, J.2
Edwards, D.3
-
77
-
-
77957742080
-
Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding
-
Mammadov J, Chen W, Ren R, Pai R, Marchione W, Yalçin F, Witsenboer H, Greene T, Thompson S, Kumpatla S (2010) Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding. Theor Appl Genet 121:577-588
-
(2010)
Theor Appl Genet
, vol.121
, pp. 577-588
-
-
Mammadov, J.1
Chen, W.2
Ren, R.3
Pai, R.4
Marchione, W.5
Yalçin, F.6
Witsenboer, H.7
Greene, T.8
Thompson, S.9
Kumpatla, S.10
-
78
-
-
85040646860
-
Targeted identification of genomic regions using TAGdb
-
Marshall D, Hayward A, Eales D, Imelfort M, Stiller J, Berkman P, Clark T, McKenzie M, Lai K, Duran C, Batley J, Edwards D (2010) Targeted identification of genomic regions using TAGdb. Plant Methods 6:19
-
(2010)
Plant Methods
, vol.6
, pp. 19
-
-
Marshall, D.1
Hayward, A.2
Eales, D.3
Imelfort, M.4
Stiller, J.5
Berkman, P.6
Clark, T.7
McKenzie, M.8
Lai, K.9
Duran, C.10
Batley, J.11
Edwards, D.12
-
79
-
-
78751512972
-
Development of genome-wide SNP assays for rice
-
McCouch SR, Zhao K, Wright M, Tung C-W, Ebana K, Thomson M, Reynolds A, Wang D, DeClerck G, Ali ML, McClung A, Eizenga G, Bustamante C (2010) Development of genome-wide SNP assays for rice. Breed Sci 60:524-535
-
(2010)
Breed Sci
, vol.60
, pp. 524-535
-
-
McCouch, S.R.1
Zhao, K.2
Wright, M.3
Tung, C.-W.4
Ebana, K.5
Thomson, M.6
Reynolds, A.7
Wang, D.8
Declerck, G.9
Ali, M.L.10
McClung, A.11
Eizenga, G.12
Bustamante, C.13
-
80
-
-
68149145780
-
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
-
McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, Bustamante CD, Weigel D, Mackill DJ, Bruskiewich RM, Rätsch G, Buell CR, Leung H, Leach JE (2009) Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc National Acad Sci 106(30):12273-12278
-
(2009)
Proc National Acad Sci
, vol.106
, Issue.30
, pp. 12273-12278
-
-
McNally, K.L.1
Childs, K.L.2
Bohnert, R.3
Davidson, R.M.4
Zhao, K.5
Ulat, V.J.6
Zeller, G.7
Clark, R.M.8
Hoen, D.R.9
Bureau, T.E.10
Stokowski, R.11
Ballinger, D.G.12
Frazer, K.A.13
Cox, D.R.14
Padhukasahasram, B.15
Bustamante, C.D.16
Weigel, D.17
Mackill, D.J.18
Bruskiewich, R.M.19
Rätsch, G.20
Buell, C.R.21
Leung, H.22
Leach, J.E.23
more..
-
81
-
-
72849144434
-
Applications of next-generation sequencing, Sequencing technologies-The next generation
-
Metzker ML (2010) Applications of next-generation sequencing, Sequencing technologies-the next generation. Nat Rev Genet 11:31-46
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
82
-
-
33846874137
-
Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
-
Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA (2007) Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Res 17:240-248
-
(2007)
Genome Res
, vol.17
, pp. 240-248
-
-
Miller, M.R.1
Dunham, J.P.2
Amores, A.3
Cresko, W.A.4
Johnson, E.A.5
-
83
-
-
0036931439
-
Characterization of the flanking regions of Zea mays microsatellites reveals a large number of useful sequence polymorphisms
-
Mogg R, Batley J, Hanley S, Edwards D, O'Sullivan H, Edwards KJ (2002) Characterization of the flanking regions of Zea mays microsatellites reveals a large number of useful sequence polymorphisms. Theor Appl Genet 105:532-543
-
(2002)
Theor Appl Genet
, vol.105
, pp. 532-543
-
-
Mogg, R.1
Batley, J.2
Hanley, S.3
Edwards, D.4
O'sullivan, H.5
Edwards, K.J.6
-
84
-
-
34547518291
-
Simple Sequence Repeat (SSR) and GC distribution in the Arabidopsis thaliana genome
-
Mortimer J, Batley J, Love C, Logan E, Edwards D (2005) Simple Sequence Repeat (SSR) and GC distribution in the Arabidopsis thaliana genome. J Plant Biotechnol 7:17-25
-
(2005)
J Plant Biotechnol
, vol.7
, pp. 17-25
-
-
Mortimer, J.1
Batley, J.2
Love, C.3
Logan, E.4
Edwards, D.5
-
85
-
-
0032615249
-
DNA microsatellites: Agents of evolution?
-
Moxon ER, Wills C (1999) DNA microsatellites: agents of evolution? Sci Am 280:94-99
-
(1999)
Sci Am
, vol.280
, pp. 94-99
-
-
Moxon, E.R.1
Wills, C.2
-
86
-
-
84866089252
-
Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology
-
Nie X, Li B, Wang L, Liu P, Biradar SS, Li T, Dolezel J, Edwards D, Luo MC, Weining S (2012) Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology. Am J Bot 99:e369-e371
-
(2012)
Am J Bot
, vol.99
, pp. e369-e371
-
-
Nie, X.1
Li, B.2
Wang, L.3
Liu, P.4
Biradar, S.S.5
Li, T.6
Dolezel, J.7
Edwards, D.8
Luo, M.C.9
Weining, S.10
-
87
-
-
73949088815
-
Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat
-
Paux E, Faure S, Choulet F, Roger D, Gauthier V, Martinant J, Sourdille P, Balfourier F, Le Paslier M, Chauveau A (2010) Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat. Plant Biotechnol J 8:196-210
-
(2010)
Plant Biotechnol J
, vol.8
, pp. 196-210
-
-
Paux, E.1
Faure, S.2
Choulet, F.3
Roger, D.4
Gauthier, V.5
Martinant, J.6
Sourdille, P.7
Balfourier, F.8
Le Paslier, M.9
Chauveau, A.10
-
88
-
-
84860435798
-
Search for pore-fection
-
Pennisi E (2012) Search for pore-fection. Science 336:534-537
-
(2012)
Science
, vol.336
, pp. 534-537
-
-
Pennisi, E.1
-
89
-
-
84857520461
-
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
-
Poland JA, Brown PJ, Sorrells ME, Jannink J-L (2012) Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS ONE 7:e32253
-
(2012)
PLoS ONE
, vol.7
, pp. e32253
-
-
Poland, J.A.1
Brown, P.J.2
Sorrells, M.E.3
Jannink, J.-L.4
-
91
-
-
0036008761
-
Applications of single nucleotide polymorphisms in crop genetics
-
Rafalski A (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5:94-100
-
(2002)
Curr Opin Plant Biol
, vol.5
, pp. 94-100
-
-
Rafalski, A.1
-
92
-
-
71049119344
-
Nucleotide polymorphism in the wheat transcriptional activator spa influences its pattern of expression and has pleiotropic effects on grain protein composition, dough viscoelasticity, and grain hardness
-
Ravel C, Martre P, Romeuf I, Dardevet M, El-Malki R, Bordes J, Duchateau N, Brunel D, Balfourier F, Charmet G (2009) Nucleotide polymorphism in the wheat transcriptional activator spa influences its pattern of expression and has pleiotropic effects on grain protein composition, dough viscoelasticity, and grain hardness. Plant Physiol 151:2133-2144
-
(2009)
Plant Physiol
, vol.151
, pp. 2133-2144
-
-
Ravel, C.1
Martre, P.2
Romeuf, I.3
Dardevet, M.4
El-Malki, R.5
Bordes, J.6
Duchateau, N.7
Brunel, D.8
Balfourier, F.9
Charmet, G.10
-
93
-
-
2942553229
-
Simple sequence repeat marker loci discovery using SSR primer
-
Robinson AJ, Love CG, Batley J, Barker G, Edwards D (2004) Simple sequence repeat marker loci discovery using SSR primer. Bioinformatics 20:1475-1476
-
(2004)
Bioinformatics
, vol.20
, pp. 1475-1476
-
-
Robinson, A.J.1
Love, C.G.2
Batley, J.3
Barker, G.4
Edwards, D.5
-
94
-
-
70350217284
-
EST-SNPs in bread wheat: Discovery, validation, genotyping and haplotype structure
-
Rustgi S, Bandopadhyay R, Balyan HS, Gupta PK (2009) EST-SNPs in bread wheat: discovery, validation, genotyping and haplotype structure. Czech J Genet Plant Breed 45:106-116
-
(2009)
Czech J Genet Plant Breed
, vol.45
, pp. 106-116
-
-
Rustgi, S.1
Bandopadhyay, R.2
Balyan, H.S.3
Gupta, P.K.4
-
95
-
-
80052831072
-
Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome
-
Saintenac C, Jiang D, Akhunov E (2011) Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome. Genome Biol 12:R88
-
(2011)
Genome Biol
, vol.12
, pp. R88
-
-
Saintenac, C.1
Jiang, D.2
Akhunov, E.3
-
96
-
-
65449189638
-
Microsatellite discovery by deep sequencing of enriched genomic libraries
-
Santana QC, Coetzee MPA, Steenkamp ET, Mlonyeni OX, Hammond GNA, Wingfield MJ, Wingfield BD (2009) Microsatellite discovery by deep sequencing of enriched genomic libraries. Biotechniques 46:217-223
-
(2009)
Biotechniques
, vol.46
, pp. 217-223
-
-
Santana, Q.C.1
Coetzee, M.P.A.2
Steenkamp, E.T.3
Mlonyeni, O.X.4
Hammond, G.N.A.5
Wingfield, M.J.6
Wingfield, B.D.7
-
98
-
-
35648929376
-
Mining microsatellites in eukaryotic genomes
-
Sharma PC, Grover A, Kahl G (2007) Mining microsatellites in eukaryotic genomes. Trends Biotechnol 25:490-498
-
(2007)
Trends Biotechnol
, vol.25
, pp. 490-498
-
-
Sharma, P.C.1
Grover, A.2
Kahl, G.3
-
99
-
-
3543034045
-
Development of genomewide DNA polymorphism database for map-based cloning of rice genes
-
Shen Y-J, Jiang H, Jin J-P, Zhang Z-B, Xi B, He Y-Y, Wang G, Wang C, Qian L, Li X, Yu Q-B, Liu H-J, Chen D-H, Gao J-H, Huang H, Shi T-L, Yang Z-N (2004) Development of genomewide DNA polymorphism database for map-based cloning of rice genes. Plant Physiol 135:1198-1205
-
(2004)
Plant Physiol
, vol.135
, pp. 1198-1205
-
-
Shen, Y.-J.1
Jiang, H.2
Jin, J.-P.3
Zhang, Z.-B.4
Xi, B.5
He, Y.-Y.6
Wang, G.7
Wang, C.8
Qian, L.9
Li, X.10
Yu, Q.-B.11
Liu, H.-J.12
Chen, D.-H.13
Gao, J.-H.14
Huang, H.15
Shi, T.-L.16
Yang, Z.-N.17
-
100
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure J, Ji HL (2008) Next-generation DNA sequencing. Nat Biotechnol 26:1135-1145
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.L.2
-
101
-
-
0037268258
-
Genome-wide analysis of microsatellite repeats in humans: Their abundance and density in specific genomic regions
-
Subramanian S, Mishra RK, Singh L (2003) Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions. Genome Bio 4(2):R13
-
(2003)
Genome Bio
, vol.4
, Issue.2
, pp. R13
-
-
Subramanian, S.1
Mishra, R.K.2
Singh, L.3
-
102
-
-
0028725547
-
Concerted evolution, molecular drive and natural-selection-reply
-
Tautz D, Schlotterer C (1994) Concerted evolution, molecular drive and natural-selection-reply. Current Biol 4:1165-1166
-
(1994)
Current Biol
, vol.4
, pp. 1165-1166
-
-
Tautz, D.1
Schlotterer, C.2
-
103
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: Survey and analysis
-
Toth G, Gaspari Z, Jurka J (2000) Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Res 10:967-981
-
(2000)
Genome Res
, vol.10
, pp. 967-981
-
-
Toth, G.1
Gaspari, Z.2
Jurka, J.3
-
104
-
-
79961173230
-
High-throughput SNP discovery and genotyping in durum wheat (Triticum durum)
-
Trebbi D, Maccaferri M, de Heer P, Sørensen A, Giuliani S, Salvi S, Sanguineti M, Massi A, van der Vossen E, Tuberosa R (2011) High-throughput SNP discovery and genotyping in durum wheat (Triticum durum). Theor Appl Genet 123:555-569
-
(2011)
Theor Appl Genet
, vol.123
, pp. 555-569
-
-
Trebbi, D.1
Maccaferri, M.2
De Heer, P.3
Sørensen, A.4
Giuliani, S.5
Salvi, S.6
Sanguineti, M.7
Massi, A.8
Van Der Vossen, E.9
Tuberosa, R.10
-
105
-
-
84856121095
-
Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat
-
Trick M, Adamski N, Mugford S, Jiang C-C, Febrer M, Uauy C (2012) Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat. BMC Plant Biol 12:14
-
(2012)
BMC Plant Biol
, vol.12
, pp. 14
-
-
Trick, M.1
Adamski, N.2
Mugford, S.3
Jiang, C.-C.4
Febrer, M.5
Uauy, C.6
-
106
-
-
43149110423
-
Complexity reduction of polymorphic sequences (crops): A novel approach for large-scale polymorphism discovery in complex genomes
-
van Orsouw NJ, Hogers RCJ, Janssen A, Yalcin F, Snoeijers S, Verstege E, Schneiders H, van der Poel H, van Oeveren J, Verstegen H, van Eijk MJT (2007) Complexity reduction of polymorphic sequences (crops): a novel approach for large-scale polymorphism discovery in complex genomes. PLoS ONE 2:e1172
-
(2007)
PLoS ONE
, vol.2
, pp. e1172
-
-
Van Orsouw, N.J.1
Hogers, R.C.J.2
Janssen, A.3
Yalcin, F.4
Snoeijers, S.5
Verstege, E.6
Schneiders, H.7
Van Der Poel, H.8
Van Oeveren, J.9
Verstegen, H.10
Van Eijk, M.J.T.11
-
107
-
-
7944238456
-
Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice
-
Varshney RK, Sigmund R, Börner A, Korzun V, Stein N, Sorrells ME, Langridge P, Graner A (2005) Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice. Plant Sci 168:195-202
-
(2005)
Plant Sci
, vol.168
, pp. 195-202
-
-
Varshney, R.K.1
Sigmund, R.2
Börner, A.3
Korzun, V.4
Stein, N.5
Sorrells, M.E.6
Langridge, P.7
Graner, A.8
-
108
-
-
84863604990
-
Targeted re-sequencing of the allohexaploid wheat exome
-
Winfield MO, Wilkinson PA, Allen AM, Barker GLA, Coghill JA, Burridge A, Hall A, Brenchley RC, D'Amore R, Hall N, Bevan MW, Richmond T, Gerhardt DJ, Jeddeloh JA, Edwards KJ (2012) Targeted re-sequencing of the allohexaploid wheat exome. Plant Biotechnol J 10:733-742
-
(2012)
Plant Biotechnol J
, vol.10
, pp. 733-742
-
-
Winfield, M.O.1
Wilkinson, P.A.2
Allen, A.M.3
Barker, G.L.A.4
Coghill, J.A.5
Burridge, A.6
Hall, A.7
Brenchley, R.C.8
D'amore, R.9
Hall, N.10
Bevan, M.W.11
Richmond, T.12
Gerhardt, D.J.13
Jeddeloh, J.A.14
Edwards, K.J.15
-
109
-
-
84856604851
-
The oryza map alignment project (omap): A new re-source for comparative genome studies within oryza
-
In: Upadhyaya NM (ed) Springer, New York
-
Wing R, Kim H, Foicoechea J, Yu Y, Kudrna D, Zuccolo A, Ammiraju J, Luo M, Nelson W, Ma J (2007) The oryza map alignment project (omap): a new re-source for comparative genome studies within oryza. In: Upadhyaya NM (ed) Rice functional genomics. Springer, New York, pp 395-409
-
(2007)
Rice Functional Genomics
, pp. 395-409
-
-
Wing, R.1
Kim, H.2
Foicoechea, J.3
Yu, Y.4
Kudrna, D.5
Zuccolo, A.6
Ammiraju, J.7
Luo, M.8
Nelson, W.9
Ma, J.10
-
110
-
-
84862936211
-
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
-
Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, Li Y, Yu C, Kristiansen K, Zhang X, Wang J, Wright M, McCouch S, Nielsen R, Wang J, Wang W (2012) Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotech 30:105-111
-
(2012)
Nat Biotech
, vol.30
, pp. 105-111
-
-
Xu, X.1
Liu, X.2
Ge, S.3
Jensen, J.D.4
Hu, F.5
Li, X.6
Dong, Y.7
Gutenkunst, R.N.8
Fang, L.9
Huang, L.10
Li, J.11
He, W.12
Zhang, G.13
Zheng, X.14
Zhang, F.15
Li, Y.16
Yu, C.17
Kristiansen, K.18
Zhang, X.19
Wang, J.20
Wright, M.21
McCouch, S.22
Nielsen, R.23
Wang, J.24
Wang, W.25
more..
-
111
-
-
77951217695
-
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genomewide discovery of single-nucleotide polymorphisms
-
Yamamoto T, Nagasaki H, Yonemaru J-i, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genomewide discovery of single-nucleotide polymorphisms. BMC Genomics 11:267
-
(2010)
BMC Genomics
, vol.11
, pp. 267
-
-
Yamamoto, T.1
Nagasaki, H.2
Yonemaru, J.-I.3
Ebana, K.4
Nakajima, M.5
Shibaya, T.6
Yano, M.7
-
112
-
-
78951478131
-
Annotationbased genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence
-
You F, Huo N, Deal K, Gu Y, Luo M-C, McGuire P, Dvorak J, Anderson O (2011) Annotationbased genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence. BMC Genomics 12:59
-
(2011)
BMC Genomics
, vol.12
, pp. 59
-
-
You, F.1
Huo, N.2
Deal, K.3
Gu, Y.4
Luo, M.-C.5
McGuire, P.6
Dvorak, J.7
Anderson, O.8
|