DNA sequence databases

Bioinformatics: Tools and Applications

Volumn , Issue , 2007, Pages 1-11

  Edwards, David ^a   Hansen, David ^c   Stajich, Jason E ^b  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84900916385     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-0-387-92738-1_1     Document Type: Chapter

References (15)

1. Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H et al (1991) Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252:1651-1656
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
3. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL (2006) Genbank. Nucl Acids Res 34:D16-D20
4. Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A et al (2006) EMBL nucleotide sequence database: developments in 2005. Nucl Acids Res 34:D10-D15
5. Drysdale R (2008) FlyBase-A database for the Drosophila research community. Methods Mol Biol 420:45-59
6. Federhen, S. (2003) The taxonomy project, in The NCBI Handbook. National Center for Biotechnology Information.
7. Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G et al (2008) Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Res 36:D577-D581
8. Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K et al (2005) The EMBL Nucleotide Sequence Database. Nucleic Acids Res 33:D29-D33
9. Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R et al (2005) The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. Nucl Acids Res 33:D71-D74
10. Leinonen R, Nardone F, Oyewole O, Redaschi N, Stoehr P (2003) The EMBL sequence version archive. Bioinformatics 19:1861-1862
11. Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P et al (2008) WormBase. Nucleic Acids Res 36:D612-D617
12. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74(12):5463-5467
13. Sugawara H, Ogasawara O, Okubo K, Gojobori T, Tateno Y (2008) DDBJ with new system and face. Nucleic Acids Res 36:D22-D24
14. Swarbreck S, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H et al (2008) The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res 36:D1009-D1014
15. The International HapMap Consortium (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449:851-861