Characterization of the flanking regions of Zea mays microsatellites reveals a large number of useful sequence polymorphisms

Theoretical and Applied Genetics

Volumn 105, Issue 4, 2002, Pages 532-543

  Mogg, R ^a   Batley, J ^a   Hanley, S ^a   Edwards, D ^a   O'Sullivan, H ^a   Edwards, Keith J ^a  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

Indels; Microsatellites; Single nucleotide polymorphism; SSRs; Zea mays

Indexed keywords

GENETIC ENGINEERING;

MICROSATELLITES; SINGLE-NUCLEOTIDES POLYMORPHISMS;

GENES;

EMBRYOPHYTA; ZEA MAYS;

EID: 0036931439     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-0897-1     Document Type: Article

References (23)

1. Alexander LJ, Rohrer GA, Beattie CW (1996) Cloning and characterization of 414 polymorphic porcine microsatellites. Anim Genet 27:137-148
2. Barros EG de, Tingey S, Rafalski JA (2000) Sequence characterization of hypervariable regions in the soybean genome: Leucine-rich repeats and simple sequence repeats. Genet Mol Biol 23:411-415
3. Brookes AJ (1999) The essence of SNPs. Gene 234:177-186
4. Brown TA (1999) Genomics, 1st Edn. Bios Scientific publishers, Oxford, UK
5. Bryan GJ, Stephenson P, Collins A, Kirby J, Smith JB, Gale MD (1999) Low levels of DNA sequence variation among adapted genotypes of hexaploid wheat. Theor Appl Genet 99:192-198
6. Coryell VH, Jessen H, Schupp JM, Webb D, Keim P (1999) Allele-specific hybridization markers for soybean. Theor Appl Genet 98:690-696
7. Dilella AG, Woo Savio LC (1987) Hybridisation of genomic DNA to oligonucleotide probes in the presence of tetramethylammonium chloride. Methods Enzymol 152:447-451
8. Edwards K, Johnstone C, Thompson C (1991) A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res 19:1349
9. Felsenstein J (1985) Confidence-limits on phylogenies-an approach using the bootstrap. Evolution 39:783-791
10. Germano J, Klein AS (1999) Species-specific nuclear and chloroplast single nucleotide polymorphisms to distinguish Picea glauca P-mariana and P-rubens. Theor Appl Genet 99:37-49
11. Grimaldi MC, Crouau Roy B (1997) Microsatellite allelic homoplasy due to variable flanking sequences. J Mol Evol 44:336-340
12. Gonen D, VeenstraVanderWeele J, Yang Z, Leventhal BL, Cook EH (1999) High-throughput flourescent CE-SSCP SNP genotyping. Mol Psychiatry 4:339-343
13. Guo Z, Guilfoyle RA, Thiel AJ, Wang R, Smith LM (1994) Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass support. Nucleic Acids Res 22:5456-5465
14. Gupta PK, Balyan IS, Sharma PC, Ramesh B (1996) Microsatellites in plants: A new class of molecular markers. Curt Sci 70:45-54
15. Hanley S, Edwards D, Stevenson D, Haines S, Hegarty M, Schuch W, Edwards KJ (2000) Identification of transposon tagged genes by the random sequencing of Mutator-tagged DNA fragments from Zea mays. Plant J 22:557-566
16. Helentjaris T Slocum M, Wright S, Schaefer A, Nienhuis J (1986) Construction of genetic linkage maps in maize and tomato using restriction fragment length polymorphism. Theor Appl Genet 72:761-769
17. Li W, Sadler LA (1991) Low nucleotide diversity in man. Genetics 129:513-523
18. Melchior WB, von Hippel PH (1973) Alteration of the relative stability of dA.dT and dG.dC base pairs in DNA. Proc Natl Acad Sci USA 70:298-302
19. Mogg R, Hanley S, Edwards KJ (1999) Generation of maize allele specific oligonucleotides from the flanking regions of microsatellite markers. Plant and Animal Genome Conference: PI491
20. Saiki RK, Walsh PS, Levenson CH, Erlich HA (1989) Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes. Proc Nat Acad Sci USA 86:6230-6234
21. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd Edn. Cold Spring Harbour Laboratory, Cold Spring Harbour, New York
22. Vos P, Hogers R, Bleeker M, Rijans M, Van de Lee T, Hornes M, Frijters A, Pots J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
23. Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44:388-396