-
1
-
-
0025879424
-
Complementary-DNA sequencing - Expressed sequence tags and human genome project
-
Adams M.D., et al. Complementary-DNA sequencing - expressed sequence tags and human genome project. Science. 252:1991;1651-1656.
-
(1991)
Science
, vol.252
, pp. 1651-1656
-
-
Adams, M.D.1
-
2
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
3
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp japonica)
-
Goff S.A., et al. A draft sequence of the rice genome (Oryza sativa L. ssp japonica). Science. 296:2002;92-100.
-
(2002)
Science
, vol.296
, pp. 92-100
-
-
Goff, S.A.1
-
4
-
-
0035102828
-
The use of the Monsanto draft rice genome sequence in research
-
Barry G.F. The use of the Monsanto draft rice genome sequence in research. Plant Physiol. 125:2001;1164-1165.
-
(2001)
Plant Physiol.
, vol.125
, pp. 1164-1165
-
-
Barry, G.F.1
-
5
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp indica)
-
Yu, J. et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp indica). Science 296, 79-92.
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
-
6
-
-
0029334974
-
Grasses, line up and form a circle
-
Moore G., et al. Grasses, line up and form a circle. Curr. Biol. 5:1995;737-739.
-
(1995)
Curr. Biol.
, vol.5
, pp. 737-739
-
-
Moore, G.1
-
7
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard T., et al. The Ensembl genome database project. Nucleic Acids Res. 30:2002;38-41.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
-
8
-
-
12244283747
-
Gramene, a tool for grass genomics
-
Ware D.H., et al. Gramene, a tool for grass genomics. Plant Physiol. 130:2002;1606-1613.
-
(2002)
Plant Physiol.
, vol.130
, pp. 1606-1613
-
-
Ware, D.H.1
-
9
-
-
0036086991
-
Gramene: A resource for comparative grass genomics
-
Ware D.H., et al. Gramene: a resource for comparative grass genomics. Nucleic Acids Res. 30:2002;103-105.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 103-105
-
-
Ware, D.H.1
-
10
-
-
0036092171
-
Gramene: Development and integration of trait and gene ontologies for rice
-
Jaiswal P., et al. Gramene: development and integration of trait and gene ontologies for rice. Comp. Funct. Genomics. 3:2002;132-136.
-
(2002)
Comp. Funct. Genomics
, vol.3
, pp. 132-136
-
-
Jaiswal, P.1
-
11
-
-
1942523430
-
The Brassica/Arabidopsis comparative genome browser: A novel approach to genome browsing
-
Lewis C.T., et al. The Brassica/Arabidopsis comparative genome browser: a novel approach to genome browsing. J. Plant Biotechnology. 5:2003;197-200.
-
(2003)
J. Plant Biotechnology
, vol.5
, pp. 197-200
-
-
Lewis, C.T.1
-
12
-
-
0036330443
-
Grid computing and bioinformatics development. A case study on the Oryza sativa (rice) genome
-
Rungsarityotin W., et al. Grid computing and bioinformatics development. A case study on the Oryza sativa (rice) genome. Pure Appl. Chem. 74:2002;891-897.
-
(2002)
Pure Appl. Chem.
, vol.74
, pp. 891-897
-
-
Rungsarityotin, W.1
-
13
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., et al. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
-
14
-
-
0344838601
-
Redundancy based detection of sequence polymorphisms in express sequence tag data using AutoSNP
-
Barker G., et al. Redundancy based detection of sequence polymorphisms in express sequence tag data using AutoSNP. Bioinformatics. 19:2003;421-422.
-
(2003)
Bioinformatics
, vol.19
, pp. 421-422
-
-
Barker, G.1
-
15
-
-
0037986743
-
Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data
-
Batley J., et al. Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data. Plant Physiol. 132:2003;84-91.
-
(2003)
Plant Physiol.
, vol.132
, pp. 84-91
-
-
Batley, J.1
-
16
-
-
0042201892
-
Mining single-nucleotide polymorphisms from hexaploid wheat ESTs
-
Somers D.J., et al. Mining single-nucleotide polymorphisms from hexaploid wheat ESTs. Genome. 46:2003;431-437.
-
(2003)
Genome
, vol.46
, pp. 431-437
-
-
Somers, D.J.1
-
17
-
-
2942553229
-
Simple sequence repeat marker loci discovery using SSR primer
-
10.1093/bioinformatics/bth104
-
Robinson, A.J. et al. (2004) Simple sequence repeat marker loci discovery using SSR primer. Bioinformatics 10.1093/bioinformatics/bth104 (www.bioinformatics.oupjournals.org).
-
(2004)
Bioinformatics
-
-
Robinson, A.J.1
-
19
-
-
0041829442
-
Recent advances in computational promoter analysis in understanding the transcriptional regulatory network
-
Qui P. Recent advances in computational promoter analysis in understanding the transcriptional regulatory network. Biochem. Biophys. Res. Commun. 309:2003;495-501.
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.309
, pp. 495-501
-
-
Qui, P.1
-
20
-
-
0038693591
-
Discovering novel cis-regulatory motifs using functional networks
-
Ettwiller L.M., et al. Discovering novel cis-regulatory motifs using functional networks. Genome Res. 13:2003;883-895.
-
(2003)
Genome Res.
, vol.13
, pp. 883-895
-
-
Ettwiller, L.M.1
-
21
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades M.W., et al. Prediction of plant microRNA targets. Cell. 110:2002;513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
-
22
-
-
0642285627
-
The microRNA world: Small is mighty
-
Nelson P., et al. The microRNA world: small is mighty. Trends Biochem. Sci. 28:2003;534-540.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 534-540
-
-
Nelson, P.1
-
23
-
-
0032234692
-
New experimental and computational approaches to the analysis of gene expression
-
Rafalski J.A., et al. New experimental and computational approaches to the analysis of gene expression. Acta Biochim. Pol. 45:1998;929-934.
-
(1998)
Acta Biochim. Pol.
, vol.45
, pp. 929-934
-
-
Rafalski, J.A.1
-
24
-
-
0028789793
-
Serial analysis of gene expression
-
Velculescu V.E., et al. Serial analysis of gene expression. Science. 270:1995;484-487.
-
(1995)
Science
, vol.270
, pp. 484-487
-
-
Velculescu, V.E.1
-
25
-
-
0034130561
-
Gene expression analysis by massively parallel signal sequencing (MPSS) on microbead arrays
-
Brenner S., et al. Gene expression analysis by massively parallel signal sequencing (MPSS) on microbead arrays. Nat. Biotechnol. 18:2000;630-634.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 630-634
-
-
Brenner, S.1
-
26
-
-
12944293179
-
In vitro cloning of complex mixtures of DNA on microbeads: Physical separation of differentially expressed cDNAs
-
Brenner S., et al. In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNAs. Proc. Natl. Acad. Sci. U. S. A. 97:2000;1665-1670.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 1665-1670
-
-
Brenner, S.1
-
27
-
-
0141450348
-
Comparison and meta analysis of microarray data: From the bench to the computer desk
-
Moreau Y., et al. Comparison and meta analysis of microarray data: from the bench to the computer desk. Trends Genet. 19:2003;570-577.
-
(2003)
Trends Genet.
, vol.19
, pp. 570-577
-
-
Moreau, Y.1
-
28
-
-
0036469893
-
Biological data becomes computer literate: New advances in bioinformatics
-
Goodman N. Biological data becomes computer literate: new advances in bioinformatics. Curr. Opin. Biotechnol. 13:2002;68-71.
-
(2002)
Curr. Opin. Biotechnol.
, vol.13
, pp. 68-71
-
-
Goodman, N.1
-
29
-
-
0242317346
-
Fundamentals of cDNA data analysis
-
Leung Y.F., Cavalieri D. Fundamentals of cDNA data analysis. Trends Genet. 19:2003;649-659.
-
(2003)
Trends Genet.
, vol.19
, pp. 649-659
-
-
Leung, Y.F.1
Cavalieri, D.2
-
30
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
Pan W. A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics. 14:2003;546-554.
-
(2003)
Bioinformatics
, vol.14
, pp. 546-554
-
-
Pan, W.1
-
31
-
-
0037862042
-
Integration and cross-validation of high-throughput gene expression data: Comparing heterogeneous data sets
-
Detours V., et al. Integration and cross-validation of high-throughput gene expression data: comparing heterogeneous data sets. FEBS Lett. 546:2003;98-102.
-
(2003)
FEBS Lett.
, vol.546
, pp. 98-102
-
-
Detours, V.1
-
32
-
-
13344269000
-
From proteins to proteomes: Large scale protein identification by two-dimensional electrophoresis and amino acid analysis
-
Wilkins M., et al. From proteins to proteomes: large scale protein identification by two-dimensional electrophoresis and amino acid analysis. Nat. Biotechnol. 14:1996;61-65.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 61-65
-
-
Wilkins, M.1
-
34
-
-
0037255072
-
The Swiss-Prot protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann B., et al. The Swiss-Prot protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31:2003;365-370.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
-
35
-
-
0043122944
-
ExPASy: The proteomics server for in-depth protein knowledge and analysis
-
Gasteiger E., et al. ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31:2003;3784-3788.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
-
36
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
Schwede T., et al. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. 31:2003;3381-3385.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
-
37
-
-
0035399610
-
Recent developments in computational proteomics
-
Maggio E.T., Ramnarayan K. Recent developments in computational proteomics. Trends Biotechnol. 19:2001;266-272.
-
(2001)
Trends Biotechnol.
, vol.19
, pp. 266-272
-
-
Maggio, E.T.1
Ramnarayan, K.2
-
38
-
-
0036468055
-
Structural proteomics: Developments in structure-to-function predictions
-
Norin M., Sundström M. Structural proteomics: developments in structure-to-function predictions. Trends Biotechnol. 20:2002;79-84.
-
(2002)
Trends Biotechnol.
, vol.20
, pp. 79-84
-
-
Norin, M.1
Sundström, M.2
-
39
-
-
0037626984
-
Integrated plant proteomics - Putting the green genomes to work
-
Heazlewood J.L., Millar A.H. Integrated plant proteomics - putting the green genomes to work. Funct. Plant Biol. 30:2003;471-482.
-
(2003)
Funct. Plant Biol.
, vol.30
, pp. 471-482
-
-
Heazlewood, J.L.1
Millar, A.H.2
-
40
-
-
0037353383
-
Mapping the proteome of barrel medic (Medicargo truncatula)
-
Watson B.S., et al. Mapping the proteome of barrel medic (Medicargo truncatula). Plant Physiol. 131:2003;1104-1123.
-
(2003)
Plant Physiol.
, vol.131
, pp. 1104-1123
-
-
Watson, B.S.1
-
41
-
-
0037015062
-
Proteomic survey of metabolic pathways in rice
-
Koller A., et al. Proteomic survey of metabolic pathways in rice. Proc. Natl. Acad. Sci. U. S. A. 99:2002;11969-11974.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 11969-11974
-
-
Koller, A.1
-
42
-
-
0142214654
-
Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation
-
Gallardo K., et al. Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation. Plant Physiol. 133:2003;664-682.
-
(2003)
Plant Physiol.
, vol.133
, pp. 664-682
-
-
Gallardo, K.1
-
43
-
-
0344668825
-
Analysis of the Arabidopsis nuclear proteome and its response to cold stress
-
Bae M.S., et al. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J. 36:2003;652-663.
-
(2003)
Plant J.
, vol.36
, pp. 652-663
-
-
Bae, M.S.1
-
44
-
-
0036532511
-
Protein microarray technology
-
Templin M.F., et al. Protein microarray technology. Trends Biotechnol. 20:2002;160-166.
-
(2002)
Trends Biotechnol.
, vol.20
, pp. 160-166
-
-
Templin, M.F.1
-
45
-
-
0036531903
-
'Omic' approaches for unravelling signalling networks
-
Zhu H., Snyder M. 'Omic' approaches for unravelling signalling networks. Curr. Opin. Cell Biol. 14:2002;173-179.
-
(2002)
Curr. Opin. Cell Biol.
, vol.14
, pp. 173-179
-
-
Zhu, H.1
Snyder, M.2
-
46
-
-
0012522653
-
Protein chips: From concept to practice
-
Lee Y.S., Mrksich M. Protein chips: from concept to practice. Trends Biotechnol. 20:2002;S14-S18.
-
(2002)
Trends Biotechnol.
, vol.20
, pp. 14-S18
-
-
Lee, Y.S.1
Mrksich, M.2
-
47
-
-
0033982936
-
KEGG: Kyoto encylopedia of genes and genomes
-
Kanehisa M., Goto S. KEGG: Kyoto encylopedia of genes and genomes. Nucleic Acids Res. 28:2000;27-30.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
48
-
-
0036081062
-
The KEGG databases at GenomeNet
-
Kanehisa M., et al. The KEGG databases at GenomeNet. Nucleic Acids Res. 30:2002;42-46.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 42-46
-
-
Kanehisa, M.1
-
49
-
-
0037277180
-
Metabolome characterisation in plant systems analysis
-
Fernie A.R. Metabolome characterisation in plant systems analysis. Funct. Plant Biol. 30:2003;111-120.
-
(2003)
Funct. Plant Biol.
, vol.30
, pp. 111-120
-
-
Fernie, A.R.1
-
50
-
-
0036931344
-
Metabolic profiling and biochemical phenotyping of plant systems
-
Roessner U., et al. Metabolic profiling and biochemical phenotyping of plant systems. Plant Cell Rep. 21:2002;189-196.
-
(2002)
Plant Cell Rep.
, vol.21
, pp. 189-196
-
-
Roessner, U.1
-
51
-
-
0033757963
-
Metabolite profiling for plant functional genomics
-
Fiehn O., et al. Metabolite profiling for plant functional genomics. Nat. Biotechnol. 18:2000;1157-1161.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1157-1161
-
-
Fiehn, O.1
-
52
-
-
0036007687
-
Metabolomics - The link between genotypes and phenotypes
-
Fiehn O. Metabolomics - the link between genotypes and phenotypes. Plant Mol. Biol. 48:2002;155-171.
-
(2002)
Plant Mol. Biol.
, vol.48
, pp. 155-171
-
-
Fiehn, O.1
-
53
-
-
0345270397
-
Plant metabolomics: Large-scale phytochemistry in the functional genomics era
-
Sumner L.W., et al. Plant metabolomics: large-scale phytochemistry in the functional genomics era. Phytochemistry. 62:2003;817-836.
-
(2003)
Phytochemistry
, vol.62
, pp. 817-836
-
-
Sumner, L.W.1
-
54
-
-
0142040405
-
Metabolomics in systems biology
-
Weckworth W. Metabolomics in systems biology. Annu. Rev. Plant Physiol. 54:2003;669-689.
-
(2003)
Annu. Rev. Plant Physiol.
, vol.54
, pp. 669-689
-
-
Weckworth, W.1
-
55
-
-
0004248992
-
-
M.G. et al. Neuffer. Cold Spring Harbor Laboratory Press
-
Neuffer M.G., et al. Mutants of Maize. 1996;Cold Spring Harbor Laboratory Press.
-
(1996)
Mutants of Maize
-
-
-
57
-
-
0003638473
-
-
T. Kiesselbach. Cold Spring Harbor Laboratory Press
-
Kiesselbach T. The Structure and Reproduction of Corn. 1999;Cold Spring Harbor Laboratory Press.
-
(1999)
The Structure and Reproduction of Corn
-
-
-
58
-
-
0036645449
-
BioSig: An imaging bioinformatic system for studying phenomics
-
Parvin B., et al. BioSig: an imaging bioinformatic system for studying phenomics. Comput. 35:2002;65-71.
-
(2002)
Comput.
, vol.35
, pp. 65-71
-
-
Parvin, B.1
-
59
-
-
0035932946
-
Evolution of genome-phenome diversity under environmental stress
-
Nevo E. Evolution of genome-phenome diversity under environmental stress. Proc. Natl. Acad. Sci. U. S. A. 98:2001;6233-6240.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 6233-6240
-
-
Nevo, E.1
-
60
-
-
0043163729
-
The computational analysis of scientific literature to define and recognise gene expression clusters
-
Raychaudhuri S., et al. The computational analysis of scientific literature to define and recognise gene expression clusters. Nucleic Acids Res. 31:2003;4553-4560.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4553-4560
-
-
Raychaudhuri, S.1
-
61
-
-
0038349286
-
Development and evaluation of an automated annotation pipeline and cDNA annotation system
-
Kasukawa T., et al. Development and evaluation of an automated annotation pipeline and cDNA annotation system. Genome Res. 13:2003;1542-1551.
-
(2003)
Genome Res.
, vol.13
, pp. 1542-1551
-
-
Kasukawa, T.1
-
62
-
-
0037396730
-
The Gene Ontology (GOA) project: Implementation of GO in Swiss-Prot, TrEMBL and Interpro
-
Camon E., et al. The Gene Ontology (GOA) project: implementation of GO in Swiss-Prot, TrEMBL and Interpro. Genome Res. 13:2003;662-672.
-
(2003)
Genome Res.
, vol.13
, pp. 662-672
-
-
Camon, E.1
-
63
-
-
0034887203
-
Creating the gene ontology resource: Design and implementation
-
Consortium T.G.O. Creating the gene ontology resource: design and implementation. Genome Res. 11:2001;1425-1433.
-
(2001)
Genome Res.
, vol.11
, pp. 1425-1433
-
-
Consortium, T.G.O.1
-
64
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME) - Towards standards for microarray data
-
Brazma A., et al. Minimum information about a microarray experiment (MIAME) - towards standards for microarray data. Nat. Genet. 29:2002;365-371.
-
(2002)
Nat. Genet.
, vol.29
, pp. 365-371
-
-
Brazma, A.1
-
65
-
-
0036092260
-
The Plant Ontology™ Consortium and plant ontologies
-
Bruskiewich R., et al. The Plant Ontology™ Consortium and plant ontologies. Comp. Funct. Genomics. 3:2002;137-142.
-
(2002)
Comp. Funct. Genomics
, vol.3
, pp. 137-142
-
-
Bruskiewich, R.1
-
66
-
-
0242607632
-
Parallel analysis of transcript and metabolic profiles: A new approach in systems biology
-
Urbanczyk-Wochniak E., et al. Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep. 4:2003;989-993.
-
(2003)
EMBO Rep.
, vol.4
, pp. 989-993
-
-
Urbanczyk-Wochniak, E.1
|