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Volumn 8, Issue 12, 2013, Pages

Mak5 and Ebp2 act together on early pre-60S particles and their reduced functionality bypasses the requirement for the essential pre-60S factor Nsa1

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; DEAD BOX PROTEIN; GROWTH FACTOR; PROTEIN EBP2; PROTEIN MAK5; PROTEIN NOP16; PROTEIN NOP4; PROTEIN NSA1; PROTEIN RIX7; PROTEIN RPF1; PROTEIN RPL14; PROTEIN RPL16; PROTEIN RPL6; RIBOSOME RNA; RNA; RNA 60S; RNA BINDING PROTEIN; UNCLASSIFIED DRUG; CARRIER PROTEIN; EBP2 PROTEIN, S CEREVISIAE; MAK5 PROTEIN, S CEREVISIAE; NOP1 PROTEIN, S CEREVISIAE; NOP4 PROTEIN, S CEREVISIAE; NSA1 PROTEIN, S CEREVISIAE; NUCLEAR PROTEIN; RIBOSOME PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; SMALL NUCLEOLAR RIBONUCLEOPROTEIN;

EID: 84891600418     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0082741     Document Type: Article
Times cited : (28)

References (98)
  • 1
    • 49249139050 scopus 로고    scopus 로고
    • The post-transcriptional steps of eukaryotic ribosome biogenesis
    • doi:10.1007/s00018-008-8027-0. PubMed: 18408888
    • Henras AK, Soudet J, Gérus M, Lebaron S, Caizergues-Ferrer M et al. (2008) The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell Mol Life Sci 65: 2334-2359. doi:10.1007/s00018-008-8027-0. PubMed: 18408888.
    • (2008) Cell Mol Life Sci , vol.65 , pp. 2334-2359
    • Henras, A.K.1    Soudet, J.2    Gérus, M.3    Lebaron, S.4    Caizergues-Ferrer, M.5
  • 2
    • 77953027564 scopus 로고    scopus 로고
    • Driving ribosome assembly
    • doi:10.1016/j.bbamcr.2009.10.009. PubMed: 19879902
    • Kressler D, Hurt E, Baßler J (2010) Driving ribosome assembly. Biochim Biophys Acta 1803: 673-683. doi:10.1016/j.bbamcr.2009.10.009. PubMed: 19879902.
    • (2010) Biochim Biophys Acta , vol.1803 , pp. 673-683
    • Kressler, D.1    Hurt, E.2    Baßler, J.3
  • 3
    • 77952583684 scopus 로고    scopus 로고
    • Maturation of eukaryotic ribosomes: Acquisition of functionality
    • doi:10.1016/j.tibs.2010.01.001. PubMed: 20137954
    • Panse VG, Johnson AW (2010) Maturation of eukaryotic ribosomes: acquisition of functionality. Trends Biochem Sci 35: 260-266. doi:10.1016/j.tibs.2010.01.001. PubMed: 20137954.
    • (2010) Trends Biochem Sci , vol.35 , pp. 260-266
    • Panse, V.G.1    Johnson, A.W.2
  • 4
    • 84855230073 scopus 로고    scopus 로고
    • The power of AAAATPases on the road of pre-60S ribosome maturation - Molecular machines that strip pre-ribosomal particles
    • doi:10.1016/j.bbamcr.2011.06.017. PubMed: 21763358
    • Kressler D, Hurt E, Bergler H, Baßler J (2012) The power of AAAATPases on the road of pre-60S ribosome maturation - molecular machines that strip pre-ribosomal particles. Biochim Biophys Acta 1823: 92-100. doi:10.1016/j.bbamcr.2011.06.017. PubMed: 21763358.
    • (2012) Biochim Biophys Acta , vol.1823 , pp. 92-100
    • Kressler, D.1    Hurt, E.2    Bergler, H.3    Baßler, J.4
  • 5
    • 84875192682 scopus 로고    scopus 로고
    • DExD/H-box RNA helicases in ribosome biogenesis
    • doi:10.4161/rna.21879. PubMed: 22922795
    • Martin R, Straub AU, Doebele C, Bohnsack MT (2013) DExD/H-box RNA helicases in ribosome biogenesis. RNA Biol 10: 4-18. doi:10.4161/rna.21879. PubMed: 22922795.
    • (2013) RNA Biol , vol.10 , pp. 4-18
    • Martin, R.1    Straub, A.U.2    Doebele, C.3    Bohnsack, M.T.4
  • 6
    • 84877921903 scopus 로고    scopus 로고
    • Yeast and human RNA helicases involved in ribosome biogenesis: Current status and perspectives
    • doi:10.1016/j.bbagrm.2013.01.007. PubMed: 23357782
    • Rodríguez-Galán O, García-Gómez JJ, de la Cruz J (2013) Yeast and human RNA helicases involved in ribosome biogenesis: Current status and perspectives. Biochim Biophys Acta 1829: 775-790. doi:10.1016/j.bbagrm.2013.01.007. PubMed: 23357782.
    • (2013) Biochim Biophys Acta , vol.1829 , pp. 775-790
    • Rodríguez-Galán, O.1    García-Gómez, J.J.2    De La Cruz, J.3
  • 7
    • 73249132431 scopus 로고    scopus 로고
    • Powering through ribosome assembly
    • doi:10.1261/rna.1792109. PubMed: 19850913
    • Strunk BS, Karbstein K (2009) Powering through ribosome assembly. RNA 15: 2083-2104. doi:10.1261/rna.1792109. PubMed: 19850913.
    • (2009) RNA , vol.15 , pp. 2083-2104
    • Strunk, B.S.1    Karbstein, K.2
  • 8
    • 0037182878 scopus 로고    scopus 로고
    • A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis
    • doi:10.1038/nature00769. PubMed: 12068309
    • Dragon F, Gallagher JE, Compagnone-Post PA, Mitchell BM, Porwancher KA et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417: 967-970. doi:10.1038/nature00769. PubMed: 12068309.
    • (2002) Nature , vol.417 , pp. 967-970
    • Dragon, F.1    Gallagher, J.E.2    Compagnone-Post, P.A.3    Mitchell, B.M.4    Porwancher, K.A.5
  • 9
    • 18544371820 scopus 로고    scopus 로고
    • 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
    • doi:10.1016/S1097-2765(02)00579-8. PubMed: 12150911
    • Grandi P, Rybin V, Baßler J, Petfalski E, Strauß D et al. (2002) 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol Cell 10: 105-115. doi:10.1016/S1097-2765(02)00579-8. PubMed: 12150911.
    • (2002) Mol Cell , vol.10 , pp. 105-115
    • Grandi, P.1    Rybin, V.2    Baßler, J.3    Petfalski, E.4    Strauß, D.5
  • 10
    • 10944222974 scopus 로고    scopus 로고
    • Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae
    • doi:10.1016/j.molcel.2004.11.031. PubMed: 15610737
    • Osheim YN, French SL, Keck KM, Champion EA, Spasov K et al. (2004) Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae. Mol Cell 16: 943-954. doi:10.1016/j.molcel.2004.11.031. PubMed: 15610737.
    • (2004) Mol Cell , vol.16 , pp. 943-954
    • Osheim, Y.N.1    French, S.L.2    Keck, K.M.3    Champion, E.A.4    Spasov, K.5
  • 11
    • 0037428520 scopus 로고    scopus 로고
    • RNA-guided nucleotide modification of ribosomal and other RNAs
    • doi:10.1074/jbc.R200023200. PubMed: 12431975
    • Decatur WA, Fournier MJ (2003) RNA-guided nucleotide modification of ribosomal and other RNAs. J Biol Chem 278: 695-698. doi:10.1074/jbc.R200023200. PubMed: 12431975.
    • (2003) J Biol Chem , vol.278 , pp. 695-698
    • Decatur, W.A.1    Fournier, M.J.2
  • 12
    • 0033509092 scopus 로고    scopus 로고
    • Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae
    • PubMed: 10567516
    • Kressler D, Linder P, de la Cruz J (1999) Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae. Mol Cell Biol 19: 7897-7912. PubMed: 10567516.
    • (1999) Mol Cell Biol , vol.19 , pp. 7897-7912
    • Kressler, D.1    Linder, P.2    De La Cruz, J.3
  • 13
    • 33847270751 scopus 로고    scopus 로고
    • New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
    • doi:10.1261/rna.373107. PubMed: 17283215
    • Piekna-Przybylska D, Decatur WA, Fournier MJ (2007) New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13: 305-312. doi:10.1261/rna.373107. PubMed: 17283215.
    • (2007) RNA , vol.13 , pp. 305-312
    • Piekna-Przybylska, D.1    Decatur, W.A.2    Fournier, M.J.3
  • 14
    • 0033367325 scopus 로고    scopus 로고
    • Ribosome synthesis in Saccharomyces cerevisiae
    • doi:10.1146/annurev.genet.33.1.261. PubMed: 10690410
    • Venema J, Tollervey D (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33: 261-311. doi:10.1146/annurev.genet.33.1.261. PubMed: 10690410.
    • (1999) Annu Rev Genet , vol.33 , pp. 261-311
    • Venema, J.1    Tollervey, D.2
  • 15
    • 0036629250 scopus 로고    scopus 로고
    • rRNA modifications and ribosome function
    • doi:10.1016/S0968-0004(02)02109-6. PubMed: 12114023
    • Decatur WA, Fournier MJ (2002) rRNA modifications and ribosome function. Trends Biochem Sci 27: 344-351. doi:10.1016/S0968-0004(02)02109-6. PubMed: 12114023.
    • (2002) Trends Biochem Sci , vol.27 , pp. 344-351
    • Decatur, W.A.1    Fournier, M.J.2
  • 16
    • 70449656291 scopus 로고    scopus 로고
    • RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1
    • doi:10.1074/jbc.M109.040774. PubMed: 19801658
    • Pertschy B, Schneider C, Gnädig M, Schäfer T, Tollervey D et al. (2009) RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1. J Biol Chem 284: 35079-35091. doi:10.1074/jbc.M109.040774. PubMed: 19801658.
    • (2009) J Biol Chem , vol.284 , pp. 35079-35091
    • Pertschy, B.1    Schneider, C.2    Gnädig, M.3    Schäfer, T.4    Tollervey, D.5
  • 17
    • 80053576895 scopus 로고    scopus 로고
    • Inside the 40S ribosome assembly machinery
    • doi:10.1016/j.cbpa.2011.07.023. PubMed: 21862385
    • Karbstein K (2011) Inside the 40S ribosome assembly machinery. Curr Opin Chem Biol 15: 657-663. doi:10.1016/j.cbpa.2011.07.023. PubMed: 21862385.
    • (2011) Curr Opin Chem Biol , vol.15 , pp. 657-663
    • Karbstein, K.1
  • 18
    • 0038738334 scopus 로고    scopus 로고
    • Pre-ribosomes on the road from the nucleolus to the cytoplasm
    • doi:10.1016/S0962-8924(03)00054-0. PubMed: 12742169
    • Tschochner H, Hurt E (2003) Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends Cell Biol 13: 255-263. doi:10.1016/S0962-8924(03)00054- 0. PubMed: 12742169.
    • (2003) Trends Cell Biol , vol.13 , pp. 255-263
    • Tschochner, H.1    Hurt, E.2
  • 19
    • 77954404581 scopus 로고    scopus 로고
    • Defining the pathway of cytoplasmic maturation of the 60S ribosomal subunit
    • doi:10.1016/j.molcel.2010.06.018. PubMed: 20670889
    • Lo KY, Li Z, Bussiere C, Bresson S, Marcotte EM et al. (2010) Defining the pathway of cytoplasmic maturation of the 60S ribosomal subunit. Mol Cell 39: 196-208. doi:10.1016/j.molcel.2010.06.018. PubMed: 20670889.
    • (2010) Mol Cell , vol.39 , pp. 196-208
    • Lo, K.Y.1    Li, Z.2    Bussiere, C.3    Bresson, S.4    Marcotte, E.M.5
  • 20
    • 33745869788 scopus 로고    scopus 로고
    • RNA-quality control by the exosome
    • doi:10.1038/nrm1964. PubMed: 16829983
    • Houseley J, LaCava J, Tollervey D (2006) RNA-quality control by the exosome. Nat Rev Mol Cell Biol 7: 529-539. doi:10.1038/nrm1964. PubMed: 16829983.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 529-539
    • Houseley, J.1    LaCava, J.2    Tollervey, D.3
  • 21
    • 84876816592 scopus 로고    scopus 로고
    • Quality control mechanisms during ribosome maturation
    • doi:10.1016/j.tcb.2013.01.004. PubMed: 23375955
    • Karbstein K (2013) Quality control mechanisms during ribosome maturation. Trends Cell Biol 23: 242-250. doi:10.1016/j.tcb.2013.01.004. PubMed: 23375955.
    • (2013) Trends Cell Biol , vol.23 , pp. 242-250
    • Karbstein, K.1
  • 22
    • 77952580619 scopus 로고    scopus 로고
    • A 'garbage can' for ribosomes: How eukaryotes degrade their ribosomes
    • doi:10.1016/j.tibs.2009.12.006. PubMed: 20097077
    • Lafontaine DL (2010) A 'garbage can' for ribosomes: how eukaryotes degrade their ribosomes. Trends Biochem Sci 35: 267-277. doi:10.1016/j.tibs. 2009.12.006. PubMed: 20097077.
    • (2010) Trends Biochem Sci , vol.35 , pp. 267-277
    • Lafontaine, D.L.1
  • 23
    • 33645727798 scopus 로고    scopus 로고
    • Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae
    • doi:10.1038/sj.emboj.7601035. PubMed: 16541108
    • Dez C, Houseley J, Tollervey D (2006) Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae. EMBO J 25: 1534-1546. doi:10.1038/sj.emboj.7601035. PubMed: 16541108.
    • (2006) EMBO J , vol.25 , pp. 1534-1546
    • Dez, C.1    Houseley, J.2    Tollervey, D.3
  • 24
    • 33645739358 scopus 로고    scopus 로고
    • Yeast Trf5p is a nuclear poly(A) polymerase
    • doi:10.1038/sj.embor.7400612. PubMed: 16374505
    • Houseley J, Tollervey D (2006) Yeast Trf5p is a nuclear poly(A) polymerase. EMBO Rep 7: 205-211. doi:10.1038/sj.embor.7400612. PubMed: 16374505.
    • (2006) EMBO Rep , vol.7 , pp. 205-211
    • Houseley, J.1    Tollervey, D.2
  • 25
    • 20444368818 scopus 로고    scopus 로고
    • RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
    • doi:10.1016/j.cell.2005.04.029. PubMed: 15935758
    • LaCava J, Houseley J, Saveanu C, Petfalski E, Thompson E et al. (2005) RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121: 713-724. doi:10.1016/j.cell.2005.04.029. PubMed: 15935758.
    • (2005) Cell , vol.121 , pp. 713-724
    • LaCava, J.1    Houseley, J.2    Saveanu, C.3    Petfalski, E.4    Thompson, E.5
  • 26
    • 84864705013 scopus 로고    scopus 로고
    • Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits
    • doi:10.1038/nsmb.2308. PubMed: 22751017
    • Lebaron S, Schneider C, van Nues RW, Swiatkowska A, Walsh D et al. (2012) Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits. Nat Struct Mol Biol 19: 744-753. doi:10.1038/nsmb.2308. PubMed: 22751017.
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 744-753
    • Lebaron, S.1    Schneider, C.2    Van Nues, R.W.3    Swiatkowska, A.4    Walsh, D.5
  • 27
    • 84866071914 scopus 로고    scopus 로고
    • Getting ready to commit: Ribosomes rehearse translation
    • doi:10.1038/nsmb.2368. PubMed: 22955931
    • Schütz S, Panse VG (2012) Getting ready to commit: ribosomes rehearse translation. Nat Struct Mol Biol 19: 861-862. doi:10.1038/nsmb.2368. PubMed: 22955931.
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 861-862
    • Schütz, S.1    Panse, V.G.2
  • 28
    • 84863619022 scopus 로고    scopus 로고
    • A Translation- Like Cycle Is a Quality Control Checkpoint for Maturing 40S Ribosome Subunits
    • doi:10.1016/j.cell.2012.04.044. PubMed: 22770215
    • Strunk BS, Novak MN, Young CL, Karbstein K (2012) A Translation- Like Cycle Is a Quality Control Checkpoint for Maturing 40S Ribosome Subunits. Cell 150: 111-121. doi:10.1016/j.cell.2012.04.044. PubMed: 22770215.
    • (2012) Cell , vol.150 , pp. 111-121
    • Strunk, B.S.1    Novak, M.N.2    Young, C.L.3    Karbstein, K.4
  • 29
    • 84863628465 scopus 로고    scopus 로고
    • Integrity of the P-site is probed during maturation of the 60S ribosomal subunit
    • doi:10.1083/jcb.201112131. PubMed: 22689654
    • Bussiere C, Hashem Y, Arora S, Frank J, Johnson AW (2012) Integrity of the P-site is probed during maturation of the 60S ribosomal subunit. J Cell Biol 197: 747-759. doi:10.1083/jcb.201112131. PubMed: 22689654.
    • (2012) J Cell Biol , vol.197 , pp. 747-759
    • Bussiere, C.1    Hashem, Y.2    Arora, S.3    Frank, J.4    Johnson, A.W.5
  • 30
    • 65649104440 scopus 로고    scopus 로고
    • A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay
    • doi:10.1016/j.molcel.2009.04.017. PubMed: 19481524
    • Cole SE, LaRiviere FJ, Merrikh CN, Moore MJ (2009) A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay. Mol Cell 34: 440-450. doi:10.1016/j.molcel.2009.04. 017. PubMed: 19481524.
    • (2009) Mol Cell , vol.34 , pp. 440-450
    • Cole, S.E.1    LaRiviere, F.J.2    Merrikh, C.N.3    Moore, M.J.4
  • 31
    • 65249168677 scopus 로고    scopus 로고
    • A role for ubiquitin in the clearance of nonfunctional rRNAs
    • doi:10.1101/gad.1775609. PubMed: 19390089
    • Fujii K, Kitabatake M, Sakata T, Miyata A, Ohno M (2009) A role for ubiquitin in the clearance of nonfunctional rRNAs. Genes Dev 23: 963-974. doi:10.1101/gad.1775609. PubMed: 19390089.
    • (2009) Genes Dev , vol.23 , pp. 963-974
    • Fujii, K.1    Kitabatake, M.2    Sakata, T.3    Miyata, A.4    Ohno, M.5
  • 32
    • 65249145158 scopus 로고    scopus 로고
    • Active destruction of defective ribosomes by a ubiquitin ligase involved in DNA repair
    • doi:10.1101/gad.1800509. PubMed: 19390082
    • Hinnebusch AG (2009) Active destruction of defective ribosomes by a ubiquitin ligase involved in DNA repair. Genes Dev 23: 891-895. doi:10.1101/gad.1800509. PubMed: 19390082.
    • (2009) Genes Dev , vol.23 , pp. 891-895
    • Hinnebusch, A.G.1
  • 33
    • 33751316103 scopus 로고    scopus 로고
    • A late-acting quality control process for mature eukaryotic rRNAs
    • doi:10.1016/j.molcel.2006.10.008. PubMed: 17188037
    • LaRiviere FJ, Cole SE, Ferullo DJ, Moore MJ (2006) A late-acting quality control process for mature eukaryotic rRNAs. Mol Cell 24: 619-626. doi:10.1016/j.molcel.2006.10.008. PubMed: 17188037.
    • (2006) Mol Cell , vol.24 , pp. 619-626
    • LaRiviere, F.J.1    Cole, S.E.2    Ferullo, D.J.3    Moore, M.J.4
  • 34
    • 78650854687 scopus 로고    scopus 로고
    • RNA helicases at work: Binding and rearranging
    • doi:10.1016/j.tibs.2010.07.008. PubMed: 20813532
    • Jankowsky E (2011) RNA helicases at work: binding and rearranging. Trends Biochem Sci 36: 19-29. doi:10.1016/j.tibs.2010.07.008. PubMed: 20813532.
    • (2011) Trends Biochem Sci , vol.36 , pp. 19-29
    • Jankowsky, E.1
  • 35
    • 33749130843 scopus 로고    scopus 로고
    • Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases
    • doi:10.1093/nar/gkl410. PubMed: 16935886
    • Jankowsky E, Bowers H (2006) Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases. Nucleic Acids Res 34: 4181-4188. doi:10.1093/nar/ gkl410. PubMed: 16935886.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4181-4188
    • Jankowsky, E.1    Bowers, H.2
  • 36
    • 79960724199 scopus 로고    scopus 로고
    • From unwinding to clamping - The DEAD box RNA helicase family
    • doi:10.1038/nrm3154. PubMed: 21779027
    • Linder P, Jankowsky E (2011) From unwinding to clamping - the DEAD box RNA helicase family. Nat Rev Mol Cell Biol 12: 505-516. doi:10.1038/nrm3154. PubMed: 21779027.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 505-516
    • Linder, P.1    Jankowsky, E.2
  • 37
    • 77953105480 scopus 로고    scopus 로고
    • The AAA-ATPase Rea1 drives removal of biogenesis factors during multiple stages of 60S ribosome assembly
    • doi:10.1016/j.molcel.2010.05.024. PubMed: 20542003
    • Baßler J, Kallas M, Pertschy B, Ulbrich C, Thoms M et al. (2010) The AAA-ATPase Rea1 drives removal of biogenesis factors during multiple stages of 60S ribosome assembly. Mol Cell 38: 712-721. doi:10.1016/j.molcel.2010.05. 024. PubMed: 20542003.
    • (2010) Mol Cell , vol.38 , pp. 712-721
    • Baßler, J.1    Kallas, M.2    Pertschy, B.3    Ulbrich, C.4    Thoms, M.5
  • 38
    • 84871965556 scopus 로고    scopus 로고
    • Rlp24 activates the AAA-ATPase Drg1 to initiate cytoplasmic pre-60S maturation
    • doi:10.1083/jcb.201205021. PubMed: 23185031
    • Kappel L, Loibl M, Zisser G, Klein I, Fruhmann G et al. (2012) Rlp24 activates the AAA-ATPase Drg1 to initiate cytoplasmic pre-60S maturation. J Cell Biol 199: 771-782. doi:10.1083/jcb.201205021. PubMed: 23185031.
    • (2012) J Cell Biol , vol.199 , pp. 771-782
    • Kappel, L.1    Loibl, M.2    Zisser, G.3    Klein, I.4    Fruhmann, G.5
  • 39
    • 45349094341 scopus 로고    scopus 로고
    • The AAA ATPase Rix7 powers progression of ribosome biogenesis by stripping Nsa1 from pre-60S particles
    • doi:10.1083/jcb.200801181. PubMed: 18559667
    • Kressler D, Roser D, Pertschy B, Hurt E (2008) The AAA ATPase Rix7 powers progression of ribosome biogenesis by stripping Nsa1 from pre-60S particles. J Cell Biol 181: 935-944. doi:10.1083/jcb.200801181. PubMed: 18559667.
    • (2008) J Cell Biol , vol.181 , pp. 935-944
    • Kressler, D.1    Roser, D.2    Pertschy, B.3    Hurt, E.4
  • 40
    • 69649102579 scopus 로고    scopus 로고
    • Mechanochemical removal of ribosome biogenesis factors from nascent 60S ribosomal subunits
    • doi:10.1016/j.cell.2009.06.045. PubMed: 19737519
    • Ulbrich C, Diepholz M, Bassler J, Kressler D, Pertschy B et al. (2009) Mechanochemical removal of ribosome biogenesis factors from nascent 60S ribosomal subunits. Cell 138: 911-922. doi:10.1016/j.cell.2009.06.045. PubMed: 19737519.
    • (2009) Cell , vol.138 , pp. 911-922
    • Ulbrich, C.1    Diepholz, M.2    Bassler, J.3    Kressler, D.4    Pertschy, B.5
  • 41
    • 33845939821 scopus 로고    scopus 로고
    • Cdc48 (p97): A "molecular gearbox" in the ubiquitin pathway?
    • doi:10.1016/j.tibs.2006.11.005. PubMed: 17142044
    • Jentsch S, Rumpf S (2007) Cdc48 (p97): a "molecular gearbox" in the ubiquitin pathway? Trends Biochem Sci 32: 6-11. doi:10.1016/j.tibs.2006.11. 005. PubMed: 17142044.
    • (2007) Trends Biochem Sci , vol.32 , pp. 6-11
    • Jentsch, S.1    Rumpf, S.2
  • 42
    • 80053299005 scopus 로고    scopus 로고
    • Cdc48: A power machine in protein degradation
    • doi:10.1016/j.tibs.2011.06.001. PubMed: 21741246
    • Stolz A, Hilt W, Buchberger A, Wolf DH (2011) Cdc48: a power machine in protein degradation. Trends Biochem Sci 36: 515-523. doi:10.1016/j.tibs.2011.06. 001. PubMed: 21741246.
    • (2011) Trends Biochem Sci , vol.36 , pp. 515-523
    • Stolz, A.1    Hilt, W.2    Buchberger, A.3    Wolf, D.H.4
  • 43
    • 0024977417 scopus 로고
    • Elevated recombination rates in transcriptionally active DNA
    • doi:10.1016/0092-8674(89)90584-9. PubMed: 2645056
    • Thomas BJ, Rothstein R (1989) Elevated recombination rates in transcriptionally active DNA. Cell 56: 619-630. doi:10.1016/0092-8674(89)90584- 9. PubMed: 2645056.
    • (1989) Cell , vol.56 , pp. 619-630
    • Thomas, B.J.1    Rothstein, R.2
  • 44
    • 18644372079 scopus 로고    scopus 로고
    • 60S preribosome formation viewed from assembly in the nucleolus until export to the cytoplasm
    • doi:10.1093/emboj/cdf547. PubMed: 12374754
    • Nissan TA, Baßler J, Petfalski E, Tollervey D, Hurt E (2002) 60S preribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. EMBO J 21: 5539-5547. doi:10.1093/emboj/cdf547. PubMed: 12374754.
    • (2002) EMBO J , vol.21 , pp. 5539-5547
    • Nissan, T.A.1    Baßler, J.2    Petfalski, E.3    Tollervey, D.4    Hurt, E.5
  • 45
    • 0030455820 scopus 로고    scopus 로고
    • Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
    • PubMed: 8978031
    • James P, Halladay J, Craig EA (1996) Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144: 1425-1436. PubMed: 8978031.
    • (1996) Genetics , vol.144 , pp. 1425-1436
    • James, P.1    Halladay, J.2    Craig, E.A.3
  • 46
    • 4444271170 scopus 로고    scopus 로고
    • A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes
    • doi:10.1002/yea.1142. PubMed: 15334558
    • Janke C, Magiera MM, Rathfelder N, Taxis C, Reber S et al. (2004) A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes. Yeast 21: 947-962. doi:10.1002/yea.1142. PubMed: 15334558.
    • (2004) Yeast , vol.21 , pp. 947-962
    • Janke, C.1    Magiera, M.M.2    Rathfelder, N.3    Taxis, C.4    Reber, S.5
  • 47
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • doi:10.1002/(SICI)1097-0061(199807)14:10. PubMed: 9717241
    • Longtine MS, McKenzie A 3rd, Demarini DJ, Shah NG, Wach A et al. (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953-961. doi:10.1002/(SICI)1097-0061(199807)14:10. PubMed: 9717241.
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie III, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5
  • 48
    • 0034841844 scopus 로고    scopus 로고
    • The tandem affinity purification (TAP) method: A general procedure of protein complex purification
    • doi:10.1006/meth.2001.1183. PubMed: 11403571
    • Puig O, Caspary F, Rigaut G, Rutz B, Bouveret E et al. (2001) The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24: 218-229. doi:10.1006/meth.2001.1183. PubMed: 11403571.
    • (2001) Methods , vol.24 , pp. 218-229
    • Puig, O.1    Caspary, F.2    Rigaut, G.3    Rutz, B.4    Bouveret, E.5
  • 49
    • 0343517443 scopus 로고    scopus 로고
    • Synthetic lethality with conditional dbp6 alleles identifies Rsa1p, a nucleoplasmic protein involved in the assembly of 60S ribosomal subunits
    • PubMed: 10567587
    • Kressler D, Doère M, Rojo M, Linder P (1999) Synthetic lethality with conditional dbp6 alleles identifies Rsa1p, a nucleoplasmic protein involved in the assembly of 60S ribosomal subunits. Mol Cell Biol 19: 8633-8645. PubMed: 10567587.
    • (1999) Mol Cell Biol , vol.19 , pp. 8633-8645
    • Kressler, D.1    Doère, M.2    Rojo, M.3    Linder, P.4
  • 50
    • 0031000205 scopus 로고    scopus 로고
    • The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae
    • doi:10.1073/pnas.94.10.5201. PubMed: 9144215
    • de la Cruz J, Iost I, Kressler D, Linder P (1997) The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 94: 5201-5206. doi:10.1073/pnas.94.10. 5201. PubMed: 9144215.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 5201-5206
    • De La Cruz, J.1    Iost, I.2    Kressler, D.3    Linder, P.4
  • 51
    • 0030679565 scopus 로고    scopus 로고
    • Fal1p is an essential DEAD-box protein involved in 40S-ribosomal-subunit biogenesis in Saccharomyces cerevisiae
    • PubMed: 9372960
    • Kressler D, de la Cruz J, Rojo M, Linder P (1997) Fal1p is an essential DEAD-box protein involved in 40S-ribosomal-subunit biogenesis in Saccharomyces cerevisiae. Mol Cell Biol 17: 7283-7294. PubMed: 9372960.
    • (1997) Mol Cell Biol , vol.17 , pp. 7283-7294
    • Kressler, D.1    De La Cruz, J.2    Rojo, M.3    Linder, P.4
  • 52
    • 0000856498 scopus 로고
    • Two nuclear mutations that block mitochondrial protein import in yeast
    • doi:10.1073/pnas.81.15.4819. PubMed: 6235522
    • Yaffe MP, Schatz G (1984) Two nuclear mutations that block mitochondrial protein import in yeast. Proc Natl Acad Sci U S A 81: 4819-4823. doi:10.1073/pnas.81.15.4819. PubMed: 6235522.
    • (1984) Proc Natl Acad Sci U S A , vol.81 , pp. 4819-4823
    • Yaffe, M.P.1    Schatz, G.2
  • 53
    • 0029790980 scopus 로고    scopus 로고
    • The yeast protein Arc1p binds to tRNA and functions as a cofactor for the methionyl- and glutamyl-tRNA synthetases
    • PubMed: 8895587
    • Simos G, Segref A, Fasiolo F, Hellmuth K, Shevchenko A et al. (1996) The yeast protein Arc1p binds to tRNA and functions as a cofactor for the methionyl- and glutamyl-tRNA synthetases. EMBO J 15: 5437-5448. PubMed: 8895587.
    • (1996) EMBO J , vol.15 , pp. 5437-5448
    • Simos, G.1    Segref, A.2    Fasiolo, F.3    Hellmuth, K.4    Shevchenko, A.5
  • 54
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • doi:10.1006/jmbi.2000.4042. PubMed: 10964570
    • Notredame C, Higgins DG, Heringa J (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol 302: 205-217. doi:10.1006/jmbi.2000.4042. PubMed: 10964570.
    • (2000) J Mol Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 55
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • doi:10.1006/jmbi.1999.3091. PubMed: 10493868
    • Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 292: 195-202. doi:10.1006/jmbi.1999.3091. PubMed: 10493868.
    • (1999) J Mol Biol , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 56
    • 83855162728 scopus 로고    scopus 로고
    • The structure of the eukaryotic ribosome at 3.0 Å resolution
    • doi:10.1126/science.1212642. PubMed: 22096102
    • Ben-Shem A, Garreau de Loubresse N, Melnikov S, Jenner L, Yusupova G et al. (2011) The structure of the eukaryotic ribosome at 3.0 Å resolution. Science 334: 1524-1529. doi:10.1126/science.1212642. PubMed: 22096102.
    • (2011) Science , vol.334 , pp. 1524-1529
    • Ben-Shem, A.1    Garreau De Loubresse, N.2    Melnikov, S.3    Jenner, L.4    Yusupova, G.5
  • 57
    • 84877310529 scopus 로고    scopus 로고
    • Structures of the human and Drosophila 80S ribosome
    • doi:10.1038/nature12104. PubMed: 23636399
    • Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M et al. (2013) Structures of the human and Drosophila 80S ribosome. Nature 497: 80-85. doi:10.1038/nature12104. PubMed: 23636399.
    • (2013) Nature , vol.497 , pp. 80-85
    • Anger, A.M.1    Armache, J.P.2    Berninghausen, O.3    Habeck, M.4    Subklewe, M.5
  • 58
    • 0345548558 scopus 로고    scopus 로고
    • Mak5p, which is required for the maintenance of the M1 dsRNA virus, is encoded by the yeast ORF YBR142w and is involved in the biogenesis of the 60S subunit of the ribosome
    • doi:10.1007/s00438-003-0913-4. PubMed: 13680366
    • Zagulski M, Kressler D, Bécam AM, Rytka J, Herbert CJ (2003) Mak5p, which is required for the maintenance of the M1 dsRNA virus, is encoded by the yeast ORF YBR142w and is involved in the biogenesis of the 60S subunit of the ribosome. Mol Genet Genomics 270: 216-224. doi:10.1007/s00438-003-0913-4. PubMed: 13680366.
    • (2003) Mol Genet Genomics , vol.270 , pp. 216-224
    • Zagulski, M.1    Kressler, D.2    Bécam, A.M.3    Rytka, J.4    Herbert, C.J.5
  • 59
    • 0028302637 scopus 로고
    • Synthetic lethality with fibrillarin identifies NOP77p, a nucleolar protein required for prerRNA processing and modification
    • PubMed: 8039506
    • Bergès T, Petfalski E, Tollervey D, Hurt EC (1994) Synthetic lethality with fibrillarin identifies NOP77p, a nucleolar protein required for prerRNA processing and modification. EMBO J 13: 3136-3148. PubMed: 8039506.
    • (1994) EMBO J , vol.13 , pp. 3136-3148
    • Bergès, T.1    Petfalski, E.2    Tollervey, D.3    Hurt, E.C.4
  • 60
    • 80053594862 scopus 로고    scopus 로고
    • A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease
    • doi:10.1038/emboj.2011.256. PubMed: 21811236.
    • Granneman S, Petfalski E, Tollervey D (2011) A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease. EMBO J 30: 4006-4019. doi:10.1038/emboj.2011.256. PubMed: 21811236.
    • (2011) EMBO J , vol.30 , pp. 4006-4019
    • Granneman, S.1    Petfalski, E.2    Tollervey, D.3
  • 61
    • 0028357522 scopus 로고
    • The yeast NOP4 gene product is an essential nucleolar protein required for pre-rRNA processing and accumulation of 60S ribosomal subunits
    • PubMed: 8039505
    • Sun C, Woolford JL Jr. (1994) The yeast NOP4 gene product is an essential nucleolar protein required for pre-rRNA processing and accumulation of 60S ribosomal subunits. EMBO J 13: 3127-3135. PubMed: 8039505.
    • (1994) EMBO J , vol.13 , pp. 3127-3135
    • Sun, C.1    Woolford Jr., J.L.2
  • 62
    • 0036786431 scopus 로고    scopus 로고
    • Purified box C/D snoRNPs are able to reproduce site-specific 2′-O-methylation of target RNA in vitro
    • doi:10.1128/MCB. 22.19.6663-6668.2002. PubMed: 12215523
    • Galardi S, Fatica A, Bachi A, Scaloni A, Presutti C et al. (2002) Purified box C/D snoRNPs are able to reproduce site-specific 2′-O-methylation of target RNA in vitro. Mol Cell Biol 22: 6663-6668. doi:10.1128/MCB. 22.19.6663-6668.2002. PubMed: 12215523.
    • (2002) Mol Cell Biol , vol.22 , pp. 6663-6668
    • Galardi, S.1    Fatica, A.2    Bachi, A.3    Scaloni, A.4    Presutti, C.5
  • 63
    • 79251574683 scopus 로고    scopus 로고
    • Structural basis for site-specific ribose methylation by box C/D RNA protein complexes
    • doi:10.1038/nature09688. PubMed: 21270896
    • Lin J, Lai S, Jia R, Xu A, Zhang L et al. (2011) Structural basis for site-specific ribose methylation by box C/D RNA protein complexes. Nature 469: 559-563. doi:10.1038/nature09688. PubMed: 21270896.
    • (2011) Nature , vol.469 , pp. 559-563
    • Lin, J.1    Lai, S.2    Jia, R.3    Xu, A.4    Zhang, L.5
  • 64
    • 0033534476 scopus 로고    scopus 로고
    • S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase
    • doi:10.1074/jbc.274.2.814. PubMed: 9873020
    • Niewmierzycka A, Clarke S (1999) S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase. J Biol Chem 274: 814-824. doi:10.1074/jbc.274.2.814. PubMed: 9873020.
    • (1999) J Biol Chem , vol.274 , pp. 814-824
    • Niewmierzycka, A.1    Clarke, S.2
  • 65
    • 0027536869 scopus 로고
    • Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
    • doi:10.1016/0092-8674(93)90120-F. PubMed: 8431947
    • Tollervey D, Lehtonen H, Jansen R, Kern H, Hurt EC (1993) Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 72: 443-457. doi:10.1016/0092-8674(93)90120-F. PubMed: 8431947.
    • (1993) Cell , vol.72 , pp. 443-457
    • Tollervey, D.1    Lehtonen, H.2    Jansen, R.3    Kern, H.4    Hurt, E.C.5
  • 66
    • 0034141555 scopus 로고    scopus 로고
    • Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution
    • doi:10.1093/emboj/19.3.317. PubMed: 10654930
    • Wang H, Boisvert D, Kim KK, Kim R, Kim SH (2000) Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution. EMBO J 19: 317-323. doi:10.1093/emboj/19.3.317. PubMed: 10654930.
    • (2000) EMBO J , vol.19 , pp. 317-323
    • Wang, H.1    Boisvert, D.2    Kim, K.K.3    Kim, R.4    Kim, S.H.5
  • 67
    • 21744446127 scopus 로고    scopus 로고
    • AAA+ proteins: Have engine, will work
    • doi:10.1038/nrg1649. PubMed: 16072036
    • Hanson PI, Whiteheart SW (2005) AAA+ proteins: have engine, will work. Nat Rev Mol Cell Biol 6: 519-529. doi:10.1038/nrg1649. PubMed: 16072036.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 519-529
    • Hanson, P.I.1    Whiteheart, S.W.2
  • 68
    • 75349090585 scopus 로고    scopus 로고
    • ATP-bound form of the D1 AAA domain inhibits an essential function of Cdc48p/p97
    • doi:10.1139/O09-116. PubMed: 20130684
    • Esaki M, Ogura T (2010) ATP-bound form of the D1 AAA domain inhibits an essential function of Cdc48p/p97. Biochem Cell Biol 88: 109-117. doi:10.1139/O09-116. PubMed: 20130684.
    • (2010) Biochem Cell Biol , vol.88 , pp. 109-117
    • Esaki, M.1    Ogura, T.2
  • 69
    • 0038487228 scopus 로고    scopus 로고
    • Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: Dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains
    • doi:10.1083/jcb.200302169. PubMed: 12847084
    • Ye Y, Meyer HH, Rapoport TA (2003) Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains. J Cell Biol 162: 71-84. doi:10.1083/jcb.200302169. PubMed: 12847084.
    • (2003) J Cell Biol , vol.162 , pp. 71-84
    • Ye, Y.1    Meyer, H.H.2    Rapoport, T.A.3
  • 70
    • 3042671460 scopus 로고    scopus 로고
    • Npa1p, a component of very early pre-60S ribosomal particles, associates with a subset of small nucleolar RNPs required for peptidyl transferase center modification
    • doi:10.1128/MCB.24.14.6324-6337.2004. PubMed: 15226434
    • Dez C, Froment C, Noaillac-Depeyre J, Monsarrat B, Caizergues- Ferrer M et al. (2004) Npa1p, a component of very early pre-60S ribosomal particles, associates with a subset of small nucleolar RNPs required for peptidyl transferase center modification. Mol Cell Biol 24: 6324-6337. doi:10.1128/MCB.24.14.6324-6337.2004. PubMed: 15226434.
    • (2004) Mol Cell Biol , vol.24 , pp. 6324-6337
    • Dez, C.1    Froment, C.2    Noaillac-Depeyre, J.3    Monsarrat, B.4    Caizergues-Ferrer, M.5
  • 71
    • 33644555054 scopus 로고    scopus 로고
    • Proteome survey reveals modularity of the yeast cell machinery
    • doi:10.1038/nature04532. PubMed: 16429126
    • Gavin AC, Aloy P, Grandi P, Krause R, Boesche M et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440: 631-636. doi:10.1038/nature04532. PubMed: 16429126.
    • (2006) Nature , vol.440 , pp. 631-636
    • Gavin, A.C.1    Aloy, P.2    Grandi, P.3    Krause, R.4    Boesche, M.5
  • 72
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • doi:10.1038/415141a. PubMed: 11805826
    • Gavin AC, Bösche M, Krause R, Grandi P, Marzioch M et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147. doi:10.1038/415141a. PubMed: 11805826.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1    Bösche, M.2    Krause, R.3    Grandi, P.4    Marzioch, M.5
  • 73
    • 84861556012 scopus 로고    scopus 로고
    • Ebp2 and Brx1 function cooperatively in 60S ribosomal subunit assembly in Saccharomyces cerevisiae
    • doi:10.1093/nar/gks057. PubMed: 22319211
    • Shimoji K, Jakovljevic J, Tsuchihashi K, Umeki Y, Wan K et al. (2012) Ebp2 and Brx1 function cooperatively in 60S ribosomal subunit assembly in Saccharomyces cerevisiae. Nucleic Acids Res 40: 4574-4588. doi:10.1093/nar/ gks057. PubMed: 22319211.
    • (2012) Nucleic Acids Res , vol.40 , pp. 4574-4588
    • Shimoji, K.1    Jakovljevic, J.2    Tsuchihashi, K.3    Umeki, Y.4    Wan, K.5
  • 74
    • 0036184160 scopus 로고    scopus 로고
    • Ssf1p prevents premature processing of an early pre-60S ribosomal particle
    • doi:10.1016/S1097-2765(02)00458-6. PubMed: 11864607
    • Fatica A, Cronshaw AD, Dlakić M, Tollervey D (2002) Ssf1p prevents premature processing of an early pre-60S ribosomal particle. Mol Cell 9: 341-351. doi:10.1016/S1097-2765(02)00458-6. PubMed: 11864607.
    • (2002) Mol Cell , vol.9 , pp. 341-351
    • Fatica, A.1    Cronshaw, A.D.2    Dlakić, M.3    Tollervey, D.4
  • 75
    • 79956302113 scopus 로고    scopus 로고
    • Human eIF4AIII interacts with an eIF4G-like partner, NOM1, revealing an evolutionarily conserved function outside the exon junction complex
    • doi:10.1101/gad.2045411. PubMed: 21576267
    • Alexandrov A, Colognori D, Steitz JA (2011) Human eIF4AIII interacts with an eIF4G-like partner, NOM1, revealing an evolutionarily conserved function outside the exon junction complex. Genes Dev 25: 1078-1090. doi:10.1101/gad. 2045411. PubMed: 21576267.
    • (2011) Genes Dev , vol.25 , pp. 1078-1090
    • Alexandrov, A.1    Colognori, D.2    Steitz, J.A.3
  • 76
    • 33745406566 scopus 로고    scopus 로고
    • The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis
    • doi:10.1093/nar/gkl419. PubMed: 16772403
    • Granneman S, Lin C, Champion EA, Nandineni MR, Zorca C et al. (2006) The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis. Nucleic Acids Res 34: 3189-3199. doi:10.1093/nar/gkl419. PubMed: 16772403.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3189-3199
    • Granneman, S.1    Lin, C.2    Champion, E.A.3    Nandineni, M.R.4    Zorca, C.5
  • 77
    • 0036927393 scopus 로고    scopus 로고
    • The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA
    • doi:10.1016/S0022-2836(02)01140-3. PubMed: 12460566
    • Kossen K, Karginov FV, Uhlenbeck OC (2002) The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA. J Mol Biol 324: 625-636. doi:10.1016/S0022-2836(02)01140-3. PubMed: 12460566.
    • (2002) J Mol Biol , vol.324 , pp. 625-636
    • Kossen, K.1    Karginov, F.V.2    Uhlenbeck, O.C.3
  • 78
    • 72449189579 scopus 로고    scopus 로고
    • The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis
    • doi:10.1038/emboj.2009.335. PubMed: 19927118
    • Lebaron S, Papin C, Capeyrou R, Chen YL, Froment C et al. (2009) The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis. EMBO J 28: 3808-3819. doi:10.1038/emboj.2009.335. PubMed: 19927118.
    • (2009) EMBO J , vol.28 , pp. 3808-3819
    • Lebaron, S.1    Papin, C.2    Capeyrou, R.3    Chen, Y.L.4    Froment, C.5
  • 79
    • 59049092956 scopus 로고    scopus 로고
    • Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation
    • doi:10.1016/j.cell.2009.01.014. PubMed: 19203580
    • Marintchev A, Edmonds KA, Marintcheva B, Hendrickson E, Oberer M et al. (2009) Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation. Cell 136: 447-460. doi:10.1016/j.cell.2009.01.014. PubMed: 19203580.
    • (2009) Cell , vol.136 , pp. 447-460
    • Marintchev, A.1    Edmonds, K.A.2    Marintcheva, B.3    Hendrickson, E.4    Oberer, M.5
  • 80
    • 77954958169 scopus 로고    scopus 로고
    • Prp43p contains a processive helicase structural architecture with a specific regulatory domain
    • doi:10.1038/emboj.2010.102. PubMed: 20512115
    • Walbott H, Mouffok S, Capeyrou R, Lebaron S, Humbert O et al. (2010) Prp43p contains a processive helicase structural architecture with a specific regulatory domain. EMBO J 29: 2194-2204. doi:10.1038/emboj.2010.102. PubMed: 20512115.
    • (2010) EMBO J , vol.29 , pp. 2194-2204
    • Walbott, H.1    Mouffok, S.2    Capeyrou, R.3    Lebaron, S.4    Humbert, O.5
  • 81
    • 84880372171 scopus 로고    scopus 로고
    • Cofactor-dependent specificity of a DEAD-box protein
    • doi:10.1073/pnas.1302577110. PubMed: 23630256
    • Young CL, Khoshnevis S, Karbstein K (2013) Cofactor-dependent specificity of a DEAD-box protein. Proc Natl Acad Sci U S A 110: E2668-E2676. doi:10.1073/pnas.1302577110. PubMed: 23630256.
    • (2013) Proc Natl Acad Sci U S A , vol.110
    • Young, C.L.1    Khoshnevis, S.2    Karbstein, K.3
  • 82
    • 17944367764 scopus 로고    scopus 로고
    • Composition and functional characterization of yeast 66S ribosome assembly intermediates
    • doi:10.1016/S1097-2765(01)00344-6. PubMed: 11583614
    • Harnpicharnchai P, Jakovljevic J, Horsey E, Miles T, Roman J et al. (2001) Composition and functional characterization of yeast 66S ribosome assembly intermediates. Mol Cell 8: 505-515. doi:10.1016/S1097-2765(01)00344-6. PubMed: 11583614.
    • (2001) Mol Cell , vol.8 , pp. 505-515
    • Harnpicharnchai, P.1    Jakovljevic, J.2    Horsey, E.3    Miles, T.4    Roman, J.5
  • 83
    • 0034666314 scopus 로고    scopus 로고
    • The budding yeast homolog of the human EBNA1-binding protein 2 (Ebp2p) is an essential nucleolar protein required for pre-rRNA processing
    • doi:10.1074/jbc.M000594200. PubMed: 10849420
    • Huber MD, Dworet JH, Shire K, Frappier L, McAlear MA (2000) The budding yeast homolog of the human EBNA1-binding protein 2 (Ebp2p) is an essential nucleolar protein required for pre-rRNA processing. J Biol Chem 275: 28764-28773. doi:10.1074/jbc.M000594200. PubMed: 10849420.
    • (2000) J Biol Chem , vol.275 , pp. 28764-28773
    • Huber, M.D.1    Dworet, J.H.2    Shire, K.3    Frappier, L.4    McAlear, M.A.5
  • 84
    • 0033853152 scopus 로고    scopus 로고
    • Ebp2p, yeast homologue of a human protein that interacts with Epstein-Barr virus nuclear antigen 1, is required for pre-rRNA processing and ribosomal subunit assembly
    • Tsujii R, Miyoshi K, Tsuno A, Matsui Y, Toh-e A, et al. (2000) Ebp2p, yeast homologue of a human protein that interacts with Epstein-Barr virus nuclear antigen 1, is required for pre-rRNA processing and ribosomal subunit assembly. Genes Cells 5: 543-553.
    • (2000) Genes Cells , vol.5 , pp. 543-553
    • Tsujii, R.1    Miyoshi, K.2    Tsuno, A.3    Matsui, Y.4    Toh-e, A.5
  • 85
    • 0036183980 scopus 로고    scopus 로고
    • The sigma(70)-like motif: A eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis
    • doi:10.1016/S1097-2765(02)00438-0. PubMed: 11864606
    • Wehner KA, Baserga SJ (2002) The sigma(70)-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis. Mol Cell 9: 329-339. doi:10.1016/S1097-2765(02)00438-0. PubMed: 11864606.
    • (2002) Mol Cell , vol.9 , pp. 329-339
    • Wehner, K.A.1    Baserga, S.J.2
  • 86
    • 84870390071 scopus 로고    scopus 로고
    • Crystal structure of the 80S yeast ribosome
    • doi:10.1016/j.sbi.2012.07.013. PubMed: 22884264
    • Jenner L, Melnikov S, de Loubresse NG, Ben-Shem A, Iskakova M et al. (2012) Crystal structure of the 80S yeast ribosome. Curr Opin Struct Biol 22: 759-767. doi:10.1016/j.sbi.2012.07.013. PubMed: 22884264.
    • (2012) Curr Opin Struct Biol , vol.22 , pp. 759-767
    • Jenner, L.1    Melnikov, S.2    De Loubresse, N.G.3    Ben-Shem, A.4    Iskakova, M.5
  • 87
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
    • doi:10.1126/science.289.5481.905. PubMed: 10937989
    • Ban N, Nissen P, Hansen J, Moore PB, Steitz TA (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289: 905-920. doi:10.1126/science.289.5481.905. PubMed: 10937989.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 88
    • 84860597372 scopus 로고    scopus 로고
    • Ribosome deficiency protects against ER stress in Saccharomyces cerevisiae
    • doi:10.1534/genetics.111.136549. PubMed: 22377630
    • Steffen KK, McCormick MA, Pham KM, MacKay VL, Delaney JR et al. (2012) Ribosome deficiency protects against ER stress in Saccharomyces cerevisiae. Genetics 191: 107-118. doi:10.1534/genetics.111.136549. PubMed: 22377630.
    • (2012) Genetics , vol.191 , pp. 107-118
    • Steffen, K.K.1    McCormick, M.A.2    Pham, K.M.3    MacKay, V.L.4    Delaney, J.R.5
  • 89
    • 50849104525 scopus 로고    scopus 로고
    • 60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes
    • doi:10.1093/nar/gkn469. PubMed: 18658244
    • Lebreton A, Rousselle JC, Lenormand P, Namane A, Jacquier A et al. (2008) 60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes. Nucleic Acids Res 36: 4988-4999. doi:10.1093/nar/gkn469. PubMed: 18658244.
    • (2008) Nucleic Acids Res , vol.36 , pp. 4988-4999
    • Lebreton, A.1    Rousselle, J.C.2    Lenormand, P.3    Namane, A.4    Jacquier, A.5
  • 90
    • 0035702842 scopus 로고    scopus 로고
    • Brix from xenopus laevis and Brx1p from yeast define a new family of proteins involved in the biogenesis of large ribosomal subunits
    • PubMed: 11843177
    • Kaser A, Bogengruber E, Hallegger M, Doppler E, Lepperdinger G et al. (2001) Brix from xenopus laevis and Brx1p from yeast define a new family of proteins involved in the biogenesis of large ribosomal subunits. Biol Chem 382: 1637-1647. PubMed: 11843177.
    • (2001) Biol Chem , vol.382 , pp. 1637-1647
    • Kaser, A.1    Bogengruber, E.2    Hallegger, M.3    Doppler, E.4    Lepperdinger, G.5
  • 91
    • 0017799839 scopus 로고
    • The course of the assembly of ribosomal subunits in yeast
    • doi:10.1016/0005-2787(78)90204-6. PubMed: 626744
    • Kruiswijk T, Planta RJ, Krop JM (1978) The course of the assembly of ribosomal subunits in yeast. Biochim Biophys Acta 517: 378-389. doi:10.1016/0005-2787(78)90204-6. PubMed: 626744.
    • (1978) Biochim Biophys Acta , vol.517 , pp. 378-389
    • Kruiswijk, T.1    Planta, R.J.2    Krop, J.M.3
  • 92
    • 0000254254 scopus 로고    scopus 로고
    • Identification of a 60S preribosomal particle that is closely linked to nuclear export
    • doi:10.1016/S1097-2765(01)00342-2. PubMed: 11583615
    • Baßler J, Grandi P, Gadal O, Leßmann T, Petfalski E et al. (2001) Identification of a 60S preribosomal particle that is closely linked to nuclear export. Mol Cell 8: 517-529. doi:10.1016/S1097-2765(01)00342-2. PubMed: 11583615.
    • (2001) Mol Cell , vol.8 , pp. 517-529
    • Baßler, J.1    Grandi, P.2    Gadal, O.3    Leßmann, T.4    Petfalski, E.5
  • 93
    • 2442502571 scopus 로고    scopus 로고
    • The putative RNA helicase Dbp6p functionally interacts with Rpl3p, Nop8p and the novel trans-acting Factor Rsa3p during biogenesis of 60S ribosomal subunits in Saccharomyces cerevisiae
    • doi:10.1534/genetics.166.4.1687. PubMed: 15126390
    • de la Cruz J, Lacombe T, Deloche O, Linder P, Kressler D (2004) The putative RNA helicase Dbp6p functionally interacts with Rpl3p, Nop8p and the novel trans-acting Factor Rsa3p during biogenesis of 60S ribosomal subunits in Saccharomyces cerevisiae. Genetics 166: 1687-1699. doi:10.1534/genetics.166.4. 1687. PubMed: 15126390.
    • (2004) Genetics , vol.166 , pp. 1687-1699
    • De La Cruz, J.1    Lacombe, T.2    Deloche, O.3    Linder, P.4    Kressler, D.5
  • 94
    • 33846926262 scopus 로고    scopus 로고
    • Characterization of Saccharomyces cerevisiae Npa2p (Urb2p) reveals a low-molecular-mass complex containing Dbp6p, Npa1p (Urb1p), Nop8p, and Rsa3p involved in early steps of 60S ribosomal subunit biogenesis
    • doi:10.1128/MCB.01523-06. PubMed: 17145778
    • Rosado IV, Dez C, Lebaron S, Caizergues-Ferrer M, Henry Y et al. (2007) Characterization of Saccharomyces cerevisiae Npa2p (Urb2p) reveals a low-molecular-mass complex containing Dbp6p, Npa1p (Urb1p), Nop8p, and Rsa3p involved in early steps of 60S ribosomal subunit biogenesis. Mol Cell Biol 27: 1207-1221. doi:10.1128/MCB.01523-06. PubMed: 17145778.
    • (2007) Mol Cell Biol , vol.27 , pp. 1207-1221
    • Rosado, I.V.1    Dez, C.2    Lebaron, S.3    Caizergues-Ferrer, M.4    Henry, Y.5
  • 95
    • 78049406997 scopus 로고    scopus 로고
    • Visualizing ribosome biogenesis: Parallel assembly pathways for the 30S subunit
    • doi:10.1126/science.1193220. PubMed: 21030658
    • Mulder AM, Yoshioka C, Beck AH, Bunner AE, Milligan RA et al. (2010) Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit. Science 330: 673-677. doi:10.1126/science.1193220. PubMed: 21030658.
    • (2010) Science , vol.330 , pp. 673-677
    • Mulder, A.M.1    Yoshioka, C.2    Beck, A.H.3    Bunner, A.E.4    Milligan, R.A.5
  • 96
    • 28444479853 scopus 로고    scopus 로고
    • An assembly landscape for the 30S ribosomal subunit
    • doi:10.1038/nature04261. PubMed: 16319883
    • Talkington MW, Siuzdak G, Williamson JR (2005) An assembly landscape for the 30S ribosomal subunit. Nature 438: 628-632. doi:10.1038/nature04261. PubMed: 16319883.
    • (2005) Nature , vol.438 , pp. 628-632
    • Talkington, M.W.1    Siuzdak, G.2    Williamson, J.R.3
  • 97
    • 0035898612 scopus 로고    scopus 로고
    • A nuclear AAA-type ATPase (Rix7p) is required for biogenesis and nuclear export of 60S ribosomal subunits
    • doi:10.1093/emboj/20.14.3695. PubMed: 11447111
    • Gadal O, Strauß D, Braspenning J, Hoepfner D, Petfalski E et al. (2001) A nuclear AAA-type ATPase (Rix7p) is required for biogenesis and nuclear export of 60S ribosomal subunits. EMBO J 20: 3695-3704. doi:10.1093/emboj/20.14. 3695. PubMed: 11447111.
    • (2001) EMBO J , vol.20 , pp. 3695-3704
    • Gadal, O.1    Strauß, D.2    Braspenning, J.3    Hoepfner, D.4    Petfalski, E.5
  • 98
    • 27644557445 scopus 로고    scopus 로고
    • Structural insights into the roles of water and the 2′ hydroxyl of the P site tRNA in the peptidyl transferase reaction
    • doi:10.1016/j.molcel.2005.09.006. PubMed: 16285925
    • Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) Structural insights into the roles of water and the 2′ hydroxyl of the P site tRNA in the peptidyl transferase reaction. Mol Cell 20: 437-448. doi:10.1016/j.molcel.2005.09.006. PubMed: 16285925.
    • (2005) Mol Cell , vol.20 , pp. 437-448
    • Schmeing, T.M.1    Huang, K.S.2    Kitchen, D.E.3    Strobel, S.A.4    Steitz, T.A.5


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