-
1
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
Rubin, G. M., Yandell, M. D., Wortman, J. R., Gabor Miklos, G. L., Nelson, C. R., Hariharan, I. K. et al. (2000). Comparative genomics of the eukaryotes. Science, 287, 2204-2215
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Gabor Miklos, G.L.4
Nelson, C.R.5
Hariharan, I.K.6
-
2
-
-
0035808566
-
Active disruption of an RNA-protein interaction by a DExH/D RNA helicase
-
Jankowsky, E., Gross, C. H., Shuman, S. & Pyle, A. M. (2001). Active disruption of an RNA-protein interaction by a DExH/D RNA helicase. Science, 291, 121-125
-
(2001)
Science
, vol.291
, pp. 121-125
-
-
Jankowsky, E.1
Gross, C.H.2
Shuman, S.3
Pyle, A.M.4
-
3
-
-
0034857262
-
DExD/H box RNA helicases: From generic motors to specific dissociation functions
-
Tanner, N. K. & Linder, P. (2001). DExD/H box RNA helicases: From generic motors to specific dissociation functions. Mol. Cell, 8, 251-262
-
(2001)
Mol. Cell
, vol.8
, pp. 251-262
-
-
Tanner, N.K.1
Linder, P.2
-
4
-
-
0040142238
-
Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A
-
Rogers, G. W., Jr, Richter, N. J. & Merrick, W. C. (1999). Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A. J. Biol. Chem. 274, 12236-12244
-
(1999)
J. Biol. Chem
, vol.274
, pp. 12236-12244
-
-
Rogers, G.W.1
Richter, N.J.2
Merrick, W.C.3
-
5
-
-
0034719392
-
The DExH protein NPH-II is a processive and directional motor for unwinding RNA
-
Jankowsky, E., Gross, C. H., Shuman, S. & Pyle, A. M. (2000). The DExH protein NPH-II is a processive and directional motor for unwinding RNA. Nature, 403, 447-451
-
(2000)
Nature
, vol.403
, pp. 447-451
-
-
Jankowsky, E.1
Gross, C.H.2
Shuman, S.3
Pyle, A.M.4
-
6
-
-
0035105921
-
Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor
-
Chen, J. Y., Stands, L., Staley, J. P., Jackups, R. R., Jr, Latus, L. J. & Chang, T. H. (2001). Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor. Mol. Cell, 7, 227-232
-
(2001)
Mol. Cell
, vol.7
, pp. 227-232
-
-
Chen, J.Y.1
Stands, L.2
Staley, J.P.3
Jackups, R.R.4
Latus, L.J.5
Chang, T.H.6
-
7
-
-
0032489021
-
Mechanical devices of the spliceosome: Motors, clocks, springs, and things
-
Staley, J. P. & Guthrie, C. (1998). Mechanical devices of the spliceosome: Motors, clocks, springs, and things. Cell, 92, 315-326
-
(1998)
Cell
, vol.92
, pp. 315-326
-
-
Staley, J.P.1
Guthrie, C.2
-
8
-
-
0033010430
-
An RNA switch at the 5′ splice site requires ATP and the DEAD box protein Prp28p
-
Staley, J. P. & Guthrie, C. (1999). An RNA switch at the 5′ splice site requires ATP and the DEAD box protein Prp28p. Mol. Cell, 3, 55-64
-
(1999)
Mol. Cell
, vol.3
, pp. 55-64
-
-
Staley, J.P.1
Guthrie, C.2
-
9
-
-
0028301073
-
RNA helicases: Modulators of RNA structure
-
Fuller-Pace, F. (1994). RNA helicases: Modulators of RNA structure. Trends Cell. Biol. 4, 271-274
-
(1994)
Trends Cell. Biol
, vol.4
, pp. 271-274
-
-
Fuller-Pace, F.1
-
10
-
-
0035370084
-
From RNA helicases to RNPases
-
Linder, P., Tanner, N. K. & Banroques, J. (2001). From RNA helicases to RNPases. Trends Biochem. Sci. 26, 339-341
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 339-341
-
-
Linder, P.1
Tanner, N.K.2
Banroques, J.3
-
11
-
-
0035877630
-
Functional domains of the yeast splicing factor Prp22p
-
Schneider, S. & Schwer, B. (2001). Functional domains of the yeast splicing factor Prp22p. J. Biol. Chem. 276, 21184-21191
-
(2001)
J. Biol. Chem
, vol.276
, pp. 21184-21191
-
-
Schneider, S.1
Schwer, B.2
-
12
-
-
0029417203
-
The "DEAD box" protein DbpA interacts specifically with the peptidyltransferase center in 23 S rRNA
-
Nicol, S. M. & Fuller-Pace, F. V. (1995). The "DEAD box" protein DbpA interacts specifically with the peptidyltransferase center in 23 S rRNA. Proc. Natl. Acad. Sci. USA, 92, 11681-11685
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 11681-11685
-
-
Nicol, S.M.1
Fuller-Pace, F.V.2
-
13
-
-
0027301893
-
DbpA: A DEAD box protein specifically activated by 23 S rRNA
-
Fuller-Pace, F. V., Nicol, S. M., Reid, A. D. & Lane, D. P. (1993). DbpA: A DEAD box protein specifically activated by 23 S rRNA. EMBO J. 12, 3619-3626
-
(1993)
EMBO J
, vol.12
, pp. 3619-3626
-
-
Fuller-Pace, F.V.1
Nicol, S.M.2
Reid, A.D.3
Lane, D.P.4
-
14
-
-
0032502997
-
Ribosome-catalyzed peptide-bond formation with an A-site substrate covalently linked to 23 S ribosomal RNA
-
Green, R., Switzer, C. & Noller, H. F. (1998). Ribosome-catalyzed peptide-bond formation with an A-site substrate covalently linked to 23 S ribosomal RNA. Science, 280, 286-289
-
(1998)
Science
, vol.280
, pp. 286-289
-
-
Green, R.1
Switzer, C.2
Noller, H.F.3
-
15
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 Á resolution
-
Yusupov, M. M., Yusupova, G. Z., Baucom, A., Lieberman, K., Earnest, T. N., Cate, J. H. & Noller, H. F. (2001). Crystal structure of the ribosome at 5.5 Á resolution. Science, 292, 883-896
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.6
Noller, H.F.7
-
16
-
-
0035046795
-
The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23 S rRNA
-
Tsu, C. A., Kossen, K. & Uhlenbeck, O. C. (2001). The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23 S rRNA. RNA, 7, 702-709
-
(2001)
RNA
, vol.7
, pp. 702-709
-
-
Tsu, C.A.1
Kossen, K.2
Uhlenbeck, O.C.3
-
17
-
-
0032387820
-
Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23 S ribosomal RNA
-
Tsu, C. A. & Uhlenbeck, O. C. (1998). Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23 S ribosomal RNA. Biochemistry, 37, 16989-16996
-
(1998)
Biochemistry
, vol.37
, pp. 16989-16996
-
-
Tsu, C.A.1
Uhlenbeck, O.C.2
-
18
-
-
0037133527
-
Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA
-
Polach, K. J. & Uhlenbeck, O. C. (2002). Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA. Biochemistry, 41, 3693-3702
-
(2002)
Biochemistry
, vol.41
, pp. 3693-3702
-
-
Polach, K.J.1
Uhlenbeck, O.C.2
-
19
-
-
0033214564
-
Interaction of the Escherichia coli DEAD box protein DbpA with 23 S ribosomal RNA
-
Pugh, G. E., Nicol, S. M. & Fuller-Pace, F. V. (1999). Interaction of the Escherichia coli DEAD box protein DbpA with 23 S ribosomal RNA. J. Mol. Biol. 292, 771-778
-
(1999)
J. Mol. Biol
, vol.292
, pp. 771-778
-
-
Pugh, G.E.1
Nicol, S.M.2
Fuller-Pace, F.V.3
-
20
-
-
0035476705
-
Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23 S rRNA
-
Diges, C. M. & Uhlenbeck, O. C. (2001). Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23 S rRNA. EMBO J. 20, 5503-5512
-
(2001)
EMBO J
, vol.20
, pp. 5503-5512
-
-
Diges, C.M.1
Uhlenbeck, O.C.2
-
21
-
-
0033214805
-
Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23 S rRNA: Delineation of a novel sub-family of bacterial DEAD proteins
-
Kossen, K. & Uhlenbeck, O. C. (1999). Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23 S rRNA: Delineation of a novel sub-family of bacterial DEAD proteins. Nucl. Acids Res. 27, 3811-3820
-
(1999)
Nucl. Acids Res
, vol.27
, pp. 3811-3820
-
-
Kossen, K.1
Uhlenbeck, O.C.2
-
22
-
-
0024220027
-
An eIF-4A-like protein is a suppressor of an Escherichia coli mutant defective in 50 S ribosomal subunit assembly
-
Nishi, K., Morel-Deville, F., Hershey, J. W., Leighton, T. & Schnier, J. (1988). An eIF-4A-like protein is a suppressor of an Escherichia coli mutant defective in 50 S ribosomal subunit assembly. Nature, 336, 496-498
-
(1988)
Nature
, vol.336
, pp. 496-498
-
-
Nishi, K.1
Morel-Deville, F.2
Hershey, J.W.3
Leighton, T.4
Schnier, J.5
-
23
-
-
0034700086
-
Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase
-
Caruthers, J. M., Johnson, E. R. & McKay, D. B. (2000). Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase. Proc. Natl. Acad. Sci. USA, 97, 13080-13085
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 13080-13085
-
-
Caruthers, J.M.1
Johnson, E.R.2
McKay, D.B.3
-
24
-
-
0035852638
-
Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii
-
Story, R. M., Li, H. & Abelson, J. N. (2001). Crystal structure of a DEAD box protein from the hyper-thermophile Methanococcus jannaschii. Proc. Natl. Acad. Sci. USA, 98, 1465-1470
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 1465-1470
-
-
Story, R.M.1
Li, H.2
Abelson, J.N.3
-
25
-
-
0032518490
-
Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding
-
Kim, J. L., Morgenstern, K. A., Griffith, J. P., Dwyer, M. D., Thomson, J. A., Murcko, M. A. et al. (1998). Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding. Structure, 6, 89-100
-
(1998)
Structure
, vol.6
, pp. 89-100
-
-
Kim, J.L.1
Morgenstern, K.A.2
Griffith, J.P.3
Dwyer, M.D.4
Thomson, J.A.5
Murcko, M.A.6
-
26
-
-
0025187414
-
Identification of a putative RNA helicase in E. coli
-
Iggo, R., Picksley, S., Southgate, J., McPheat, J. & Lane, D. P. (1990). Identification of a putative RNA helicase in E. coli. Nucl. Acids Res. 18, 5413-5417
-
(1990)
Nucl. Acids Res
, vol.18
, pp. 5413-5417
-
-
Iggo, R.1
Picksley, S.2
Southgate, J.3
McPheat, J.4
Lane, D.P.5
-
27
-
-
0022730369
-
A temperature-sensitive mutant in the gene rplX for ribosomal protein L24 and its suppression by spontaneous mutations in a 23 S rRNA gene of Escherichia coli
-
Nishi, K. & Schnier, J. (1986). A temperature-sensitive mutant in the gene rplX for ribosomal protein L24 and its suppression by spontaneous mutations in a 23 S rRNA gene of Escherichia coli. EMBO J. 5, 1373-1376
-
(1986)
EMBO J
, vol.5
, pp. 1373-1376
-
-
Nishi, K.1
Schnier, J.2
-
28
-
-
0018321175
-
On the control of ribosomal protein biosynthesis in E. coli. IV. Studies on a temperature-sensitive mutant defective in the assembly of 50 S subunits
-
Marvaldi, J., Pichon, J. & Marchis-Mouren, G. (1979). On the control of ribosomal protein biosynthesis in E. coli. IV. Studies on a temperature-sensitive mutant defective in the assembly of 50 S subunits. Mol. Gen. Genet. 171, 317-325
-
(1979)
Mol. Gen. Genet
, vol.171
, pp. 317-325
-
-
Marvaldi, J.1
Pichon, J.2
Marchis-Mouren, G.3
-
29
-
-
0027996760
-
mRNAs can be stabilized by DEAD-box proteins
-
Iost, I. & Dreyfus, M. (1994). mRNAs can be stabilized by DEAD-box proteins. Nature, 372, 193-196
-
(1994)
Nature
, vol.372
, pp. 193-196
-
-
Iost, I.1
Dreyfus, M.2
-
31
-
-
0031011214
-
Hydrolysis of AMPPNP by the motor domain of ncd, a kinesin-related protein
-
Suzuki, Y., Shimizu, T., Morii, H. & Tanokura, M. (1997). Hydrolysis of AMPPNP by the motor domain of ncd, a kinesin-related protein. FEBS Letters, 409, 29-32
-
(1997)
FEBS Letters
, vol.409
, pp. 29-32
-
-
Suzuki, Y.1
Shimizu, T.2
Morii, H.3
Tanokura, M.4
-
32
-
-
0032562239
-
The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide
-
Lorsch, J. R. & Herschlag, D. (1998). The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide. Biochemistry, 37, 2180-2193
-
(1998)
Biochemistry
, vol.37
, pp. 2180-2193
-
-
Lorsch, J.R.1
Herschlag, D.2
-
33
-
-
0030916948
-
Protein-facilitated folding
-
Weeks, K. M. (1997). Protein-facilitated folding. Curr. Opin. Struct. Biol. 7, 336-342
-
(1997)
Curr. Opin. Struct. Biol
, vol.7
, pp. 336-342
-
-
Weeks, K.M.1
-
34
-
-
0028326761
-
New insights into the auxiliary domains of eukaryotic RNA binding proteins
-
Biamonti, G. & Riva, S. (1994). New insights into the auxiliary domains of eukaryotic RNA binding proteins. FEBS Letters, 340, 1-8
-
(1994)
FEBS Letters
, vol.340
, pp. 1-8
-
-
Biamonti, G.1
Riva, S.2
-
35
-
-
0029163563
-
RNA chaperones and the RNA folding problem
-
Herschlag, D. (1995). RNA chaperones and the RNA folding problem. J. Biol. Chem. 270, 20871-20874
-
(1995)
J. Biol. Chem
, vol.270
, pp. 20871-20874
-
-
Herschlag, D.1
-
36
-
-
0040708535
-
Characterization of DbpA, an Escherichia coli DEAD box protein with ATP independent RNA unwinding activity
-
Boddeker, N., Stade, K. & Franceschi, F. (1997). Characterization of DbpA, an Escherichia coli DEAD box protein with ATP independent RNA unwinding activity. Nucl. Acids Res. 25, 537-545
-
(1997)
Nucl. Acids Res
, vol.25
, pp. 537-545
-
-
Boddeker, N.1
Stade, K.2
Franceschi, F.3
-
37
-
-
0011542799
-
The Pfam protein families database
-
Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S. R. et al. (2002). The Pfam protein families database. Nucl. Acids Res. 30, 276-280
-
(2002)
Nucl. Acids Res
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
-
38
-
-
0025733344
-
deaD, a new Escherichia coli gene encoding a presumed ATP-dependent RNA helicase, can suppress a mutation in rpsB, the gene encoding ribosomal protein S2
-
Toone, W. M., Rudd, K. E. & Friesen, J. D. (1991). deaD, a new Escherichia coli gene encoding a presumed ATP-dependent RNA helicase, can suppress a mutation in rpsB, the gene encoding ribosomal protein S2. J. Bacteriol. 173, 3291-3302
-
(1991)
J. Bacteriol
, vol.173
, pp. 3291-3302
-
-
Toone, W.M.1
Rudd, K.E.2
Friesen, J.D.3
-
39
-
-
0031697183
-
PRP16, a DEAH-box RNA helicase, is recruited to the spliceosome primarily via its nonconserved N-terminal domain
-
Wang, Y. & Guthrie, C. (1998). PRP16, a DEAH-box RNA helicase, is recruited to the spliceosome primarily via its nonconserved N-terminal domain. RNA, 4, 1216-1229
-
(1998)
RNA
, vol.4
, pp. 1216-1229
-
-
Wang, Y.1
Guthrie, C.2
-
40
-
-
0032824138
-
Structure-based mutagenesis study of hepatitis C virus NS3 helicase
-
Lin, C. & Kim, J. L. (1999). Structure-based mutagenesis study of hepatitis C virus NS3 helicase. J. Virol. 73, 8798-8807
-
(1999)
J. Virol
, vol.73
, pp. 8798-8807
-
-
Lin, C.1
Kim, J.L.2
-
41
-
-
0034595414
-
Kinetic analysis of the effects of mutagenesis of W501 and V432 of the hepatitis C virus NS3 helicase domain on ATPase and strand-separating activity
-
Preugschat, F., Danger, D. P., Carter, L. H., III, Davis, R. G. & Porter, D. J. (2000). Kinetic analysis of the effects of mutagenesis of W501 and V432 of the hepatitis C virus NS3 helicase domain on ATPase and strand-separating activity. Biochemistry, 39, 5174-5183
-
(2000)
Biochemistry
, vol.39
, pp. 5174-5183
-
-
Preugschat, F.1
Danger, D.P.2
Carter, L.H.3
Davis, R.G.4
Porter, D.J.5
-
42
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein, E., Caudy, A. A., Hammond, S. M. & Hannon, G. J. (2001). Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature, 409, 363-366
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
43
-
-
0027494565
-
The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis
-
Pause, A., Methot, N. & Sonenberg, N. (1993). The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis. Mol. Cell. Biol. 13, 6789-6798
-
(1993)
Mol. Cell. Biol
, vol.13
, pp. 6789-6798
-
-
Pause, A.1
Methot, N.2
Sonenberg, N.3
-
44
-
-
0023953676
-
Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro
-
Sampson, J. R. & Uhlenbeck, O. C. (1988). Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc. Natl. Acad. Sci. USA, 85, 1033-1037
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 1033-1037
-
-
Sampson, J.R.1
Uhlenbeck, O.C.2
-
45
-
-
0023216779
-
In vitro synthesis of 16 S ribosomal RNA containing single base changes and assembly into a functional 30 S ribosome
-
Krzyzosiak, W., Denman, R., Nurse, K., Hellmann, W., Boublik, M., Gehrke, C. W. et al. (1987). In vitro synthesis of 16 S ribosomal RNA containing single base changes and assembly into a functional 30 S ribosome. Biochemistry, 26, 2353-2364
-
(1987)
Biochemistry
, vol.26
, pp. 2353-2364
-
-
Krzyzosiak, W.1
Denman, R.2
Nurse, K.3
Hellmann, W.4
Boublik, M.5
Gehrke, C.W.6
-
46
-
-
0025314138
-
Cloning, in vitro transcription, and biological activity of Escherichia coli 23 S ribosomal RNA
-
Weitzmann, C. J., Cunningham, P. R. & Ofengand, J. (1990). Cloning, in vitro transcription, and biological activity of Escherichia coli 23 S ribosomal RNA. Nucl. Acids Res. 18, 3515-3520
-
(1990)
Nucl. Acids Res
, vol.18
, pp. 3515-3520
-
-
Weitzmann, C.J.1
Cunningham, P.R.2
Ofengand, J.3
-
47
-
-
0024285808
-
Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: Enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes
-
Zaug, A. J., Grosshans, C. A. & Cech, T. R. (1988). Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: Enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes. Biochemistry, 27, 8924-8931
-
(1988)
Biochemistry
, vol.27
, pp. 8924-8931
-
-
Zaug, A.J.1
Grosshans, C.A.2
Cech, T.R.3
-
50
-
-
2942571539
-
The comparative RNA web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone, J. J., Subramanian, S., Schnare, M. N., Collett, J. R., D'Souza, L. M., Du, Y. et al. (2002). The comparative RNA web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformat. 3, 2
-
(2002)
BMC Bioinformat
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
|