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Volumn 469, Issue 7331, 2011, Pages 559-564

Structural basis for site-specific ribose methylation by box C/D RNA protein complexes

Author keywords

[No Author keywords available]

Indexed keywords

FIBRILLARIN; L7AE PROTEIN; NOP5 PROTEIN; PROTEIN; RIBONUCLEOPROTEIN; RIBOSE; RNA; UNCLASSIFIED DRUG;

EID: 79251574683     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature09688     Document Type: Article
Times cited : (105)

References (37)
  • 1
    • 0033367325 scopus 로고    scopus 로고
    • Ribosome synthesisin Saccharomyces cerevisiae
    • Venema, J. & Tollervey, D. Ribosome synthesis in Saccharomyces cerevisiae. Annu. Rev. Genet. 33, 261-311 (1999)
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 261-311
    • Venema, J.1    Tollervey, D.2
  • 2
    • 0035898634 scopus 로고    scopus 로고
    • Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
    • Kiss, T. Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J. 20, 3617-3622 (2001)
    • (2001) EMBO J. , vol.20 , pp. 3617-3622
    • Kiss, T.1
  • 3
    • 34247130376 scopus 로고    scopus 로고
    • The structure and function of small nucleolar ribonucleoproteins
    • Reichow, S. L., Hamma, T., Ferre-D'Amare, A. R. & Varani, G. The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res. 35, 1452-1464 (2007)
    • (2007) Nucleic Acids Res. , vol.35 , pp. 1452-1464
    • Reichow, S.L.1    Hamma, T.2    Ferre-D'Amare, A.R.3    Varani, G.4
  • 4
    • 49249139050 scopus 로고    scopus 로고
    • The post-transcriptional steps of eukaryotic ribosome biogenesis
    • Henras, A. K. et al. The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell. Mol. Life Sci. 65, 2334-2359 (2008)
    • (2008) Cell. Mol. Life Sci. , vol.65 , pp. 2334-2359
    • Henras, A.K.1
  • 5
    • 0029808113 scopus 로고    scopus 로고
    • Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides
    • Cavaille, J., Nicoloso, M. & Bachellerie, J. P. Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature 383, 732-735 (1996)
    • (1996) Nature , vol.383 , pp. 732-735
    • Cavaille, J.1    Nicoloso, M.2    Bachellerie, J.P.3
  • 6
    • 0030604698 scopus 로고    scopus 로고
    • Sitespecific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
    • Kiss-Laszlo, Z., Henry, Y., Bachellerie, J. P., Caizergues-Ferrer, M. & Kiss, T. Sitespecific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell 85, 1077-1088 (1996)
    • (1996) Cell , vol.85 , pp. 1077-1088
    • Kiss-Laszlo, Z.1    Henry, Y.2    Bachellerie, J.P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 7
    • 0029855867 scopus 로고    scopus 로고
    • A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus
    • Tycowski, K. T., Smith, C. M., Shu, M. D. & Steitz, J. A. A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. Proc. Natl Acad. Sci. USA 93, 14480-14485 (1996)
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 14480-14485
    • Tycowski, K.T.1    Smith, C.M.2    Shu, M.D.3    Steitz, J.A.4
  • 8
    • 0034697257 scopus 로고    scopus 로고
    • Homologs of small nucleolar RNAs in Archaea
    • Omer, A. D. et al. Homologs of small nucleolar RNAs in Archaea. Science 288, 517-522 (2000)
    • (2000) Science , vol.288 , pp. 517-522
    • Omer, A.D.1
  • 9
    • 0034141555 scopus 로고    scopus 로고
    • Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, A hyperthermophile, at L.6 A resolution
    • Wang, H., Boisvert, D., Kim, K. K., Kim, R.& Kim, S. H. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, A hyperthermophile, At L.6 A resolution. EMBO J. 19, 317-323 (2000)
    • (2000) EMBO J. , vol.19 , pp. 317-323
    • Wang, H.1    Boisvert, D.2    Kim, K.K.3    Kim, R.4    Kim, S.H.5
  • 10
    • 0034509631 scopus 로고    scopus 로고
    • Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment
    • Vidovic, I., Nottrott, S., Hartmuth, K., Luhrmann, R. & Ficner, R. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. Mol. Cell 6, 1331-1342 (2000)
    • (2000) Mol. Cell , vol.6 , pp. 1331-1342
    • Vidovic, I.1    Nottrott, S.2    Hartmuth, K.3    Luhrmann, R.4    Ficner, R.5
  • 11
    • 0034721649 scopus 로고    scopus 로고
    • AcommoncoreRNPstructuresharedbetweenthesmallnucleoar box C/D RNPs and the spliceosomal U4 snRNP
    • Watkins,N. J.et al.AcommoncoreRNPstructuresharedbetweenthesmallnucleoar box C/D RNPs and the spliceosomal U4 snRNP. Cell 103, 457-466 (2000)
    • (2000) Cell , vol.103 , pp. 457-466
    • Watkins, N.J.1
  • 12
    • 0037099680 scopus 로고    scopus 로고
    • Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP
    • Cahill, N. M. et al. Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP. EMBO J. 21, 3816-3828 (2002)
    • (2002) EMBO J. , vol.21 , pp. 3816-3828
    • Cahill, N.M.1
  • 13
    • 0037117533 scopus 로고    scopus 로고
    • In vitro reconstitutionandactivity of a C/D box methylation guide ribonucleoprotein complex
    • Omer, A. D., Ziesche, S., Ebhardt, H. & Dennis, P. P. In vitro reconstitutionandactivity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl Acad. Sci. USA 99, 5289-5294 (2002)
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 5289-5294
    • Omer, A.D.1    Ziesche, S.2    Ebhardt, H.3    Dennis, P.P.4
  • 14
    • 0037389971 scopus 로고    scopus 로고
    • Structure and function of archaeal box C/D sRNP core proteins
    • Aittaleb, M. et al. Structure and function of archaeal box C/D sRNP core proteins. Nature Struct. Biol. 10, 256-263 (2003)
    • (2003) Nature Struct. Biol. , vol.10 , pp. 256-263
    • Aittaleb, M.1
  • 15
    • 0141869105 scopus 로고    scopus 로고
    • Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles
    • Rashid, R. et al. Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles. J. Mol. Biol. 333, 295-306 (2003)
    • (2003) J. Mol. Biol. , vol.333 , pp. 295-306
    • Rashid, R.1
  • 16
    • 0043026864 scopus 로고    scopus 로고
    • Efficient RNA 29-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C9/D9 RNPs
    • Tran, E. J., Zhang, X. & Maxwell, E. S. Efficient RNA 29-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C9/D9 RNPs. EMBO J. 22, 3930-3940 (2003)
    • (2003) EMBO J. , vol.22 , pp. 3930-3940
    • Tran, E.J.1    Zhang, X.2    Maxwell, E.S.3
  • 17
    • 2342475659 scopus 로고    scopus 로고
    • Molecular basis of box C/D RNA-protein interactions; Cocrystal structure of archaealL7Aeanda box C/DRNA
    • Moore, T., Zhang, Y., Fenley, M. O. & Li, H. Molecular basis of box C/D RNA-protein interactions; Cocrystal structure of archaealL7Aeanda box C/DRNA. Structure12, 807-818 (2004)
    • (2004) Structure , vol.12 , pp. 807-818
    • Moore, T.1    Zhang, Y.2    Fenley, M.O.3    Li, H.4
  • 18
    • 13944251291 scopus 로고    scopus 로고
    • Conserved spacing between the box C/D and C9/D9 RNPs of the archaeal box C/D sRNP complex is required for efficient 29-O-methylation of target RNAs
    • Tran, E., Zhang, X., Lackey, L. & Maxwell, E. S. Conserved spacing between the box C/D and C9/D9 RNPs of the archaeal box C/D sRNP complex is required for efficient 29-O-methylation of target RNAs. RNA 11, 285-293 (2005)
    • (2005) RNA , vol.11 , pp. 285-293
    • Tran, E.1    Zhang, X.2    Lackey, L.3    Maxwell, E.S.4
  • 19
    • 33750974186 scopus 로고    scopus 로고
    • Thebipartite architecture of the sRNAin an archaeal box C/D complex is a primary determinant of specificity
    • Hardin, J. W. & Batey, R. T. Thebipartite architecture of the sRNAin an archaeal box C/D complex is a primary determinant of specificity. Nucleic Acids Res. 34, 5039-5051 (2006)
    • (2006) Nucleic Acids Res. , vol.34 , pp. 5039-5051
    • Hardin, J.W.1    Batey, R.T.2
  • 20
    • 33748161045 scopus 로고    scopus 로고
    • Probing the structure and functionof an archaeal C/D-box methylation guide sRNA
    • Omer, A. D., Zago, M., Chang, A. & Dennis, P. P. Probing the structure and functionof an archaeal C/D-box methylation guide sRNA. RNA 12, 1708-1720 (2006)
    • (2006) RNA , vol.12 , pp. 1708-1720
    • Omer, A.D.1    Zago, M.2    Chang, A.3    Dennis, P.P.4
  • 21
    • 33646890462 scopus 로고    scopus 로고
    • The coiled-coil domain of theNop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation
    • Zhang, X. et al. The coiled-coil domain of theNop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation. RNA 12, 1092-1103 (2006)
    • (2006) RNA , vol.12 , pp. 1092-1103
    • Zhang, X.1
  • 22
    • 34547586356 scopus 로고    scopus 로고
    • Alternative conformations of the archaeal Nop56/58-fibrillarin complex imply flexibility in box C/D RNPs
    • Oruganti, S. et al. Alternative conformations of the archaeal Nop56/58-fibrillarin complex imply flexibility in box C/D RNPs. J. Mol. Biol. 371, 1141-1150 (2007)
    • (2007) J. Mol. Biol. , vol.371 , pp. 1141-1150
    • Oruganti, S.1
  • 23
    • 69549114951 scopus 로고    scopus 로고
    • Structural organization ofbox C/DRNA-guidedRNAmethyltransferase
    • Ye, K. et al. Structural organization ofbox C/DRNA- guidedRNAmethyltransferase. Proc. Natl Acad. Sci. USA 106, 13808-13813 (2009)
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 13808-13813
    • Ye, K.1
  • 24
    • 70249117455 scopus 로고    scopus 로고
    • A dimeric structure for archaeal box C/D small ribonucleoproteins
    • Bleichert, F. et al. A dimeric structure for archaeal box C/D small ribonucleoproteins. Science 325, 1384-1387 (2009)
    • (2009) Science , vol.325 , pp. 1384-1387
    • Bleichert, F.1
  • 25
    • 77956912854 scopus 로고    scopus 로고
    • Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle
    • Xue, S. et al. Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. Mol. Cell 39, 939-949 (2010)
    • (2010) Mol. Cell , vol.39 , pp. 939-949
    • Xue, S.1
  • 26
    • 0035423087 scopus 로고    scopus 로고
    • The kink-turn: A new RNA secondary structure motif
    • Klein, D. J., Schmeing, T. M., Moore, P. B. & Steitz, T. A. The kink-turn: a new RNA secondary structure motif. EMBO J. 20, 4214-4221 (2001)
    • (2001) EMBO J. , vol.20 , pp. 4214-4221
    • Klein, D.J.1    Schmeing, T.M.2    Moore, P.B.3    Steitz, T.A.4
  • 27
    • 0036889385 scopus 로고    scopus 로고
    • Conserved stemII of the box C/D motif is essential for nucleolar localization and is required, Along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP
    • Watkins, N. J., Dickmanns, A. & Luhrmann, R. Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, Along with the 15.5K protein, For the hierarchical assembly of the box C/D snoRNP. Mol. Cell. Biol. 22, 8342-8352 (2002)
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 8342-8352
    • Watkins, N.J.1    Dickmanns, A.2    Luhrmann, R.3
  • 28
    • 34248229182 scopus 로고    scopus 로고
    • Exploration ofpairing constraints identifies a 9 base-pair core within box C/D snoRNA-rRNA duplexes
    • Chen, C. L., Perasso, R., Qu, L. H. & Amar, L. Exploration of pairing constraints identifies a 9 base-pair core within box C/D snoRNA-rRNA duplexes. J. Mol. Biol. 369, 771-783 (2007)
    • (2007) J. Mol. Biol. , vol.369 , pp. 771-783
    • Chen, C.L.1    Perasso, R.2    Qu, L.H.3    Amar, L.4
  • 29
    • 34249044487 scopus 로고    scopus 로고
    • Structural features of the guide:target RNA duplex required for archaeal box C/DsRNA-guided nucleotide29-O-methylation
    • Appel, C. D. & Maxwell, E. S. Structural features of the guide:target RNA duplex required for archaeal box C/DsRNA-guided nucleotide29-O-methylation. RNA 13, 899-911 (2007)
    • (2007) RNA , vol.13 , pp. 899-911
    • Appel, C.D.1    Maxwell, E.S.2
  • 31
    • 0029020003 scopus 로고
    • Crystallization ofRNA-protein complexes. I. Methods for the large-scale preparation of RNA suitable for crystallographic studies
    • Price, S. R., Ito, N., Oubridge, C., Avis, J. M.& Nagai, K. Crystallization ofRNA-protein complexes. I. Methods for the large-scale preparation of RNA suitable for crystallographic studies. J. Mol. Biol. 249, 398-408 (1995)
    • (1995) J. Mol. Biol. , vol.249 , pp. 398-408
    • Price, S.R.1    Ito, N.2    Oubridge, C.3    Avis, J.M.4    Nagai, K.5
  • 32
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997)
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 33
    • 34447508216 scopus 로고    scopus 로고
    • Phaser crystallographic software
    • McCoy, A. J. et al. Phaser crystallographic software. J. Appl. Cryst. 40, 658-674 (2007)
    • (2007) J. Appl. Cryst. , vol.40 , pp. 658-674
    • McCoy, A.J.1
  • 34
    • 0000560808 scopus 로고    scopus 로고
    • MOLREP: An automated program for molecular replacement
    • Vagin, A. A. & Teplyakov, A. MOLREP: an automated program for molecular replacement. J. Appl. Cryst. 30, 1022-1025 (1997)
    • (1997) J. Appl. Cryst. , vol.30 , pp. 1022-1025
    • Vagin, A.A.1    Teplyakov, A.2
  • 35
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132 (2004)
    • (2004) Acta Crystallogr. D , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 36
    • 76449098262 scopus 로고    scopus 로고
    • PHENIX: A comprehensive Python-based system for macromolecular structure solution
    • Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213-221 (2010)
    • (2010) Acta Crystallogr. D , vol.66 , pp. 213-221
    • Adams, P.D.1


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