-
1
-
-
55549092726
-
CTCF regulates cell cycle progression of ab T cells in the thymus
-
doi:10.1038/emboj.2008.214
-
Heath H et al. 2008 CTCF regulates cell cycle progression of ab T cells in the thymus. EMBO J. 27, 2839-2850. (doi:10.1038/emboj.2008.214)
-
(2008)
EMBO J
, vol.27
, pp. 2839-2850
-
-
Heath, H.1
-
2
-
-
0025675441
-
A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 50-flanking sequence of the chicken c-myc gene
-
Lobanenkov VV, Nicolas RH, Adler VV, Paterson H, Klenova EM, Polotskaja AV, Goodwin GH. 1990 A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 50-flanking sequence of the chicken c-myc gene. Oncogene 5, 1743-1753.
-
(1990)
Oncogene
, vol.5
, pp. 1743-1753
-
-
Lobanenkov, V.V.1
Nicolas, R.H.2
Adler, V.V.3
Paterson, H.4
Klenova, E.M.5
Polotskaja, A.V.6
Goodwin, G.H.7
-
3
-
-
0027362621
-
CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms
-
Klenova EM, Nicolas RH, Paterson HF, Carne AF, Heath CM, Goodwin GH, Neiman PE, Lobanenkov VV. 1993 CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms. Mol. Cell. Biol. 13, 7612-7624.
-
(1993)
Mol. Cell. Biol
, vol.13
, pp. 7612-7624
-
-
Klenova, E.M.1
Nicolas, R.H.2
Paterson, H.F.3
Carne, A.F.4
Heath, C.M.5
Goodwin, G.H.6
Neiman, P.E.7
Lobanenkov, V.V.8
-
4
-
-
0029929793
-
An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes
-
Filippova GN, Fagerlie S, Klenova EM, Myers C, Dehner Y, Goodwin G, Neiman PE, Collins SJ, Lobanenkov VV. 1996 An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes. Mol. Cell. Biol. 16, 2802-2813.
-
(1996)
Mol. Cell. Biol
, vol.16
, pp. 2802-2813
-
-
Filippova, G.N.1
Fagerlie, S.2
Klenova, E.M.3
Myers, C.4
Dehner, Y.5
Goodwin, G.6
Neiman, P.E.7
Collins, S.J.8
Lobanenkov, V.V.9
-
5
-
-
0033529654
-
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators
-
doi:10. 1016/S0092-8674(00)81967-4
-
Bell AC, West AG, Felsenfeld G. 1999 The protein CTCF is required for the enhancer blocking activity of vertebrate insulators. Cell 98, 387-396. (doi:10. 1016/S0092-8674(00)81967-4)
-
(1999)
Cell
, vol.98
, pp. 387-396
-
-
Bell, A.C.1
West, A.G.2
Felsenfeld, G.3
-
6
-
-
0034713275
-
CTCF mediates methylationsensitive enhancer-blocking activity at the H19/Igf2 locus
-
doi:10.1038/ 35013106
-
Hark AT, Schoenherr CJ, Katz DJ, Ingram RS, Levorse JM, Tilghman SM. 2000 CTCF mediates methylationsensitive enhancer-blocking activity at the H19/Igf2 locus. Nature 405, 486-489. (doi:10.1038/ 35013106)
-
(2000)
Nature
, vol.405
, pp. 486-489
-
-
Hark, A.T.1
Schoenherr, C.J.2
Katz, D.J.3
Ingram, R.S.4
Levorse, J.M.5
Tilghman, S.M.6
-
7
-
-
0037076316
-
Positioneffect protection and enhancer blocking by the chicken b-globin insulator are separable activities
-
doi:10. 1073/pnas.102179399
-
Recillas-Targa F, Pikaart MJ, Burgess-Beusse B, Bell AC, Litt MD, West AG, Felsenfeld G. 2002 Positioneffect protection and enhancer blocking by the chicken b-globin insulator are separable activities. Proc. Natl Acad. Sci. USA 99, 6883-6888. (doi:10. 1073/pnas.102179399)
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 6883-6888
-
-
Recillas-Targa, F.1
Pikaart, M.J.2
Burgess-Beusse, B.3
Bell, A.C.4
Litt, M.D.5
West, A.G.6
Felsenfeld, G.7
-
8
-
-
84863393570
-
Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages
-
doi:10.1016/j.cell.2011.11.058
-
Schmidt D et al. 2012 Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell 148, 335-348. (doi:10.1016/j.cell.2011.11.058)
-
(2012)
Cell
, vol.148
, pp. 335-348
-
-
Schmidt, D.1
-
9
-
-
84865836579
-
Widespread plasticity in CTCF occupancy linked to DNA methylation
-
doi:10.1101/gr.136101.111
-
Wang H et al. 2012 Widespread plasticity in CTCF occupancy linked to DNA methylation. Genome Res. 22, 1680-1688. (doi:10.1101/gr.136101.111)
-
(2012)
Genome Res
, vol.22
, pp. 1680-1688
-
-
Wang, H.1
-
10
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
doi:10.1038/nature11243
-
Shen Y et al. 2012 A map of the cis-regulatory sequences in the mouse genome. Nature 488, 116-120. (doi:10.1038/nature11243)
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
-
11
-
-
33947201809
-
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
-
doi:10.1016/j.cell.2006. 12.048
-
Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, Green RD, Zhang MQ, Lobanenkov VV, Ren B. 2007 Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128, 1231-1245. (doi:10.1016/j.cell.2006. 12.048)
-
(2007)
Cell
, vol.128
, pp. 1231-1245
-
-
Kim, T.H.1
Abdullaev, Z.K.2
Smith, A.D.3
Ching, K.A.4
Loukinov, D.I.5
Green, R.D.6
Zhang, M.Q.7
Lobanenkov, V.V.8
Ren, B.9
-
12
-
-
33748259774
-
CTCF mediates long-range chromatin looping and local histone modification in the b-globin locus
-
doi:10.1101/gad.399506
-
Splinter E, Heath H, Kooren J, Palstra RJ, Klous P, Grosveld F, Galjart N, Laat de W. 2006 CTCF mediates long-range chromatin looping and local histone modification in the b-globin locus. Genes Dev. 20, 2349-2354. (doi:10.1101/gad.399506)
-
(2006)
Genes Dev
, vol.20
, pp. 2349-2354
-
-
Splinter, E.1
Heath, H.2
Kooren, J.3
Palstra, R.J.4
Klous, P.5
Grosveld, F.6
Galjart, N.7
de Laat, W.8
-
13
-
-
79959699992
-
CTCF-mediated functional chromatin interactome in pluripotent cells
-
doi:10.1038/ng.857
-
Handoko L et al. 2011 CTCF-mediated functional chromatin interactome in pluripotent cells. Nat. Genet. 43, 630-638. (doi:10.1038/ng.857)
-
(2011)
Nat. Genet
, vol.43
, pp. 630-638
-
-
Handoko, L.1
-
14
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
doi:10. 1038/nature06947
-
Guelen L et al. 2008 Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453, 948-951. (doi:10. 1038/nature06947)
-
(2008)
Nature
, vol.453
, pp. 948-951
-
-
Guelen, L.1
-
15
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
doi:10.1038/nature11082
-
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. 2012 Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376-380. (doi:10.1038/nature11082)
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
16
-
-
0027254748
-
A 50 element of the chicken b-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila
-
doi:10.1016/0092-8674(93)80052-G
-
Chung JH, Whiteley M, Felsenfeld G. 1993 A 50 element of the chicken b-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila. Cell 74, 505-514. (doi:10.1016/0092-8674(93)80052-G)
-
(1993)
Cell
, vol.74
, pp. 505-514
-
-
Chung, J.H.1
Whiteley, M.2
Felsenfeld, G.3
-
17
-
-
0036094107
-
Conserved CTCF insulator elements flank the mouse and human beta-globin loci
-
doi:10.1128/MCB.22.11.3820-3831.2002)
-
Farrell CM, West AG, Felsenfeld G. 2002 Conserved CTCF insulator elements flank the mouse and human beta-globin loci. Mol. Cell. Biol. 22, 3820-3831. (doi:10.1128/MCB.22.11.3820-3831.2002)
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 3820-3831
-
-
Farrell, C.M.1
West, A.G.2
Felsenfeld, G.3
-
18
-
-
0042091987
-
A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus
-
doi:10.1128/MCB.23.15.5234- 5244.2003
-
Bulger M, Schubeler D, Bender MA, Hamilton J, Farrell CM, Hardison RC, Groudine M. 2003 A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus. Mol. Cell. Biol. 23, 5234-5244. (doi:10.1128/MCB.23.15.5234- 5244.2003)
-
(2003)
Ol. Cell. Biol
, vol.23
, pp. 5234-5244
-
-
Bulger, M.1
Schubeler, D.2
Bender, M.A.3
Hamilton, J.4
Farrell, C.M.5
Hardison, R.C.6
Groudine, M.7
-
19
-
-
33747174553
-
Flanking HS-62.5 and 30 HS1, and regions upstream of the LCR, are not required for b-globin transcription
-
doi:10.1182/blood-2006-04-014431
-
Bender MA, Byron R, Ragoczy T, Telling A, Bulger M, Groudine M. 2006 Flanking HS-62.5 and 30 HS1, and regions upstream of the LCR, are not required for b-globin transcription. Blood 108, 1395-1401. (doi:10.1182/blood-2006-04-014431)
-
(2006)
Blood
, vol.108
, pp. 1395-1401
-
-
Bender, M.A.1
Byron, R.2
Ragoczy, T.3
Telling, A.4
Bulger, M.5
Groudine, M.6
-
20
-
-
0141730403
-
The b-globin nuclear compartment in development and erythroid differentiation
-
doi:10. 1038/ng1244
-
Palstra RJ, Tolhuis B, Splinter E, Nijmeijer R, Grosveld F, de Laat W. 2003 The b-globin nuclear compartment in development and erythroid differentiation. Nat. Genet. 35, 190-194. (doi:10. 1038/ng1244)
-
(2003)
Nat. Genet
, vol.35
, pp. 190-194
-
-
Palstra, R.J.1
Tolhuis, B.2
Splinter, E.3
Nijmeijer, R.4
Grosveld, F.5
de Laat, W.6
-
21
-
-
0027203606
-
Epigenetic mechanisms underlying the imprinting of the mouse H19 gene
-
doi:10.1101/gad.7.9.1663
-
Bartolomei MS, Webber AL, Brunkow ME, Tilghman SM. 1993 Epigenetic mechanisms underlying the imprinting of the mouse H19 gene. Genes Dev. 7, 1663-1673. (doi:10.1101/gad.7.9.1663)
-
(1993)
Genes Dev
, vol.7
, pp. 1663-1673
-
-
Bartolomei, M.S.1
Webber, A.L.2
Brunkow, M.E.3
Tilghman, S.M.4
-
22
-
-
0027172684
-
Parental-origin-specific epigenetic modification of the mouse H19 gene
-
10.1038/362751a0
-
Ferguson-Smith AC, Sasaki H, Cattanach BM, Surani MA. 1993 Parental-origin-specific epigenetic modification of the mouse H19 gene. Nature 362, 751-755. (doi:10.1038/362751a0)
-
(1993)
Nature
, vol.362
, pp. 751-755
-
-
Ferguson-Smith, A.C.1
Sasaki, H.2
Cattanach, B.M.3
Surani, M.A.4
-
23
-
-
0034713375
-
Methylation of a CTCFdependent boundary controls imprinted expression of the Igf2 gene
-
doi:10. 1038/35013100
-
Bell AC, Felsenfeld G. 2000 Methylation of a CTCFdependent boundary controls imprinted expression of the Igf2 gene. Nature 405, 482-485. (doi:10. 1038/35013100)
-
(2000)
Nature
, vol.405
, pp. 482-485
-
-
Bell, A.C.1
Felsenfeld, G.2
-
24
-
-
3543018516
-
Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parentspecific chromatin loops
-
doi:10.1038/ng1402
-
Murrell A, Heeson S, Reik W. 2004 Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parentspecific chromatin loops. Nat. Genet. 36, 889-893. (doi:10.1038/ng1402)
-
(2004)
Nat. Genet
, vol.36
, pp. 889-893
-
-
Murrell, A.1
Heeson, S.2
Reik, W.3
-
25
-
-
33746063711
-
CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2
-
doi:10.1073/pnas. 0600326103
-
Kurukuti S, Tiwari VK, Tavoosidana G, Pugacheva E, Murrell A, Zhao Z, Lobanenkov V, Reik W, Ohisson R. 2006 CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2. Proc. Natl Acad. Sci. USA 103, 10 684-10 689. (doi:10.1073/pnas. 0600326103)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 10684-10689
-
-
Kurukuti, S.1
Tiwari, V.K.2
Tavoosidana, G.3
Pugacheva, E.4
Murrell, A.5
Zhao, Z.6
Lobanenkov, V.7
Reik, W.8
Ohisson, R.9
-
26
-
-
34247576603
-
Analysis of the H19ICR insulator
-
doi:10.1128/MCB. 02170-06
-
Yoon YS, Jeong S, Rong Q, Park KY, Chung JH, Pfeifer K. 2007 Analysis of the H19ICR insulator. Mol. Cell. Biol. 27, 3499-3510. (doi:10.1128/MCB. 02170-06)
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 3499-3510
-
-
Yoon, Y.S.1
Jeong, S.2
Rong, Q.3
Park, K.Y.4
Chung, J.H.5
Pfeifer, K.6
-
27
-
-
34249026300
-
Highresolution profiling of histone methylations in the human genome
-
doi:10.1016/j. cell.2007.05.009
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. 2007 Highresolution profiling of histone methylations in the human genome. Cell 129, 823-837. (doi:10.1016/j. cell.2007.05.009)
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
28
-
-
76249107162
-
CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features
-
doi:10.1186/gb-2009-10-11-r131
-
Essien K, Vigneau S, Apreleva S, Singh LN, Bartolomei MS, Hannenhalli S. 2009 CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome Biol. 10, R131. (doi:10.1186/gb-2009-10-11-r131)
-
(2009)
Genome Biol
, vol.10
-
-
Essien, K.1
Vigneau, S.2
Apreleva, S.3
Singh, L.N.4
Bartolomei, M.S.5
Hannenhalli, S.6
-
29
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler MB et al. 2011 DNA-binding factors shape the mouse methylome at distal regulatory regions. Nat. 480, 490-495.
-
(2011)
Nat
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
-
30
-
-
6944231017
-
Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation
-
doi:10.1038/ng1426
-
Yu W et al. 2004 Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation. Nat. Genet. 36, 1105-1110. (doi:10.1038/ng1426)
-
(2004)
Nat. Genet
, vol.36
, pp. 1105-1110
-
-
Yu, W.1
-
31
-
-
52049112345
-
CCCTCbinding factor activates PARP-1 affecting DNA methylation machinery
-
doi:10.1074/jbc.M801170200)
-
Guastafierro T, Cecchinelli B, Zampieri M, Reale A, Riggio G, Sthandier O, Zupi G, Calab P. 2008 CCCTCbinding factor activates PARP-1 affecting DNA methylation machinery. J. Biol. Chem. 283, 21 873-21 880. (doi:10.1074/jbc.M801170200)
-
(2008)
J. Biol. Chem
, vol.283
, pp. 21873-21880
-
-
Guastafierro, T.1
Cecchinelli, B.2
Zampieri, M.3
Reale, A.4
Riggio, G.5
Sthandier, O.6
Zupi, G.7
Calab, P.8
-
32
-
-
84555178345
-
ADP-ribose polymers localized on Ctcf-Parp1-Dnmt1 complex prevent methylation of Ctcf target sites
-
doi:10. 1042/BJ20111417
-
Zampieri M, Guastafierro T, Calabrese R, Ciccarone F, Bacalini MG, Reale A, Perilli M, Passananti C, Caiafa P. 2012 ADP-ribose polymers localized on Ctcf-Parp1-Dnmt1 complex prevent methylation of Ctcf target sites. Biochem. J. 441, 645-652. (doi:10. 1042/BJ20111417)
-
(2012)
Biochem. J
, vol.441
, pp. 645-652
-
-
Zampieri, M.1
Guastafierro, T.2
Calabrese, R.3
Ciccarone, F.4
Bacalini, M.G.5
Reale, A.6
Perilli, M.7
Passananti, C.8
Caiafa, P.9
-
33
-
-
60149095014
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
-
doi:10.1101/gr. 082800.108
-
Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K. 2009 Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res. 19, 24-32. (doi:10.1101/gr. 082800.108)
-
(2009)
Genome Res
, vol.19
, pp. 24-32
-
-
Cuddapah, S.1
Jothi, R.2
Schones, D.E.3
Roh, T.Y.4
Cui, K.5
Zhao, K.6
-
34
-
-
84868335552
-
Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains
-
doi:10.1101/gr.136788.111
-
Van Bortle K, Ramos E, Takenaka N, Yang J, Wahi JE, Corces VG. 2012 Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains. Genome Res. 22, 2176-2187. (doi:10.1101/gr.136788.111)
-
(2012)
Genome Res
, vol.22
, pp. 2176-2187
-
-
van Bortle, K.1
Ramos, E.2
Takenaka, N.3
Yang, J.4
Wahi, J.E.5
Corces, V.G.6
-
35
-
-
77952576224
-
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
-
doi:10.1016/j.molcel.2010.03.016
-
Peric-Hupkes D et al. 2010 Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. Mol. Cell 38, 603-613. (doi:10.1016/j.molcel.2010.03.016)
-
(2010)
Mol. Cell
, vol.38
, pp. 603-613
-
-
Peric-Hupkes, D.1
-
36
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
doi:10.1016/j.cell.2008.04.043
-
Chen X et al. 2008 Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133, 1106-1117. (doi:10.1016/j.cell.2008.04.043)
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
-
37
-
-
0031468080
-
The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation
-
Vostrov AA, Quitschke WW. 1997 The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation. J. Biol. Chem. 272, 33 353-33 359.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 33353-33359
-
-
Vostrov, A.A.1
Quitschke, W.W.2
-
38
-
-
39149121436
-
Cohesin mediates transcriptional insulation by CCCTC-binding factor
-
doi:10.1038/nature06634
-
Wendt KS et al. 2008 Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 451, 796-801. (doi:10.1038/nature06634)
-
(2008)
Nature
, vol.451
, pp. 796-801
-
-
Wendt, K.S.1
-
39
-
-
46149113242
-
CTCF physically links cohesin to chromatin
-
doi:10.1073/pnas.0801273105
-
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A. 2008 CTCF physically links cohesin to chromatin. Proc. Natl Acad. Sci. USA 105, 8309-8314. (doi:10.1073/pnas.0801273105)
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 8309-8314
-
-
Rubio, E.D.1
Reiss, D.J.2
Welcsh, P.L.3
Disteche, C.M.4
Filippova, G.N.5
Baliga, N.S.6
Aebersold, R.7
Ranish, J.A.8
Krumm, A.9
-
40
-
-
38849121606
-
Cohesins functionally associate with CTCF on mammalian chromosome arms
-
doi:10.1016/j.cell.2008.01.011
-
Parelho V et al. 2008 Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell 132, 422-433. (doi:10.1016/j.cell.2008.01.011)
-
(2008)
Cell
, vol.132
, pp. 422-433
-
-
Parelho, V.1
-
41
-
-
39449111307
-
Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
-
doi:10.1038/emboj.2008.1
-
Stedman W, Kang H, Lin S, Kissil JL, Bartolomei MS, Lieberman PM. 2008 Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators. EMBO J. 27, 654-666. (doi:10.1038/emboj.2008.1)
-
(2008)
EMBO J
, vol.27
, pp. 654-666
-
-
Stedman, W.1
Kang, H.2
Lin, S.3
Kissil, J.L.4
Bartolomei, M.S.5
Lieberman, P.M.6
-
42
-
-
79958065572
-
Specific sites in the C terminus of CTCF interact with the SA2 subunit of the cohesin complex and are required for cohesin-dependent insulation activity
-
doi:10.1128/MCB.05093-11
-
Xiao T, Wallace J, Felsenfeld G. 2011 Specific sites in the C terminus of CTCF interact with the SA2 subunit of the cohesin complex and are required for cohesin-dependent insulation activity. Mol. Cell. Biol. 31, 2174-2183. (doi:10.1128/MCB.05093-11)
-
(2011)
Mol. Cell. Biol
, vol.31
, pp. 2174-2183
-
-
Xiao, T.1
Wallace, J.2
Felsenfeld, G.3
-
43
-
-
73349127026
-
Cohesin: Its roles and mechanisms
-
doi:10.1146/annurev-genet-102108-134233
-
Nasmyth K, Haering CH. 2009 Cohesin: its roles and mechanisms. Annu. Rev. Genet. 43, 525-558. (doi:10.1146/annurev-genet-102108-134233)
-
(2009)
Annu. Rev. Genet
, vol.43
, pp. 525-558
-
-
Nasmyth, K.1
Haering, C.H.2
-
44
-
-
73649145481
-
Cohesin is required for higherorder chromatin conformation at the imprinted IGF2-H19 locus
-
doi:10. 1371/journal.pgen.1000739
-
Nativio R et al. 2009 Cohesin is required for higherorder chromatin conformation at the imprinted IGF2-H19 locus. PLoS Genet. 5, e1000739. (doi:10. 1371/journal.pgen.1000739)
-
(2009)
PLoS Genet
, vol.5
-
-
Nativio, R.1
-
45
-
-
67650997080
-
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
-
Hadjur S, Williams LM, Ryan NK, Cobb BS, Sexton T, Fraser P, Fisher AG, Merkenschlager M. 2009 Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus. Nature 460, 410-413.
-
(2009)
Nature
, vol.460
, pp. 410-413
-
-
Hadjur, S.1
Williams, L.M.2
Ryan, N.K.3
Cobb, B.S.4
Sexton, T.5
Fraser, P.6
Fisher, A.G.7
Merkenschlager, M.8
-
46
-
-
79955952481
-
Cohesin mediates chromatin interactions that regulate mammalian b-globin expression
-
doi:10.1074/jbc.M110.207365
-
Chien R et al. 2011 Cohesin mediates chromatin interactions that regulate mammalian b-globin expression. J. Biol. Chem. 286, 17 870-17 878. (doi:10.1074/jbc.M110.207365)
-
(2011)
J. Biol. Chem
, vol.286
, pp. 17870-17878
-
-
Chien, R.1
-
47
-
-
80052042965
-
A role for cohesin in T-cellreceptor rearrangement and thymocyte differentiation
-
doi:10.1038/ nature10312
-
Seitan VC et al. 2011 A role for cohesin in T-cellreceptor rearrangement and thymocyte differentiation. Nature 476, 467-471. (doi:10.1038/ nature10312)
-
(2011)
Nature
, vol.476
, pp. 467-471
-
-
Seitan, V.C.1
-
48
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
doi:10.1038/nature09380
-
Kagey MH et al. 2010 Mediator and cohesin connect gene expression and chromatin architecture. Nature 467, 430-435. (doi:10.1038/nature09380)
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
-
49
-
-
77951836691
-
A CTCF-independent role for cohesin in tissue-specific transcription
-
doi:10. 1101/gr.100479.109
-
Schmidt D, Schwalie PC, Ross-Innes CS, Hurtado A, Brown GD, Carroll JS, Flicek P, Odam D. 2010 A CTCF-independent role for cohesin in tissue-specific transcription. Genome Res. 20, 578-588. (doi:10. 1101/gr.100479.109)
-
(2010)
Genome Res
, vol.20
, pp. 578-588
-
-
Schmidt, D.1
Schwalie, P.C.2
Ross-Innes, C.S.3
Hurtado, A.4
Brown, G.D.5
Carroll, J.S.6
Flicek, P.7
Odam, D.8
-
50
-
-
84868325694
-
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
-
doi:10.1101/gr.136507.111
-
Faure AJ, Schmidt D, Watt S, Schwalie PC, Wilson MD, Xu H, Ramsay RG, Odam DT, Flicek P. 2012 Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules. Genome Res. 22, 2163-2175. (doi:10.1101/gr.136507.111)
-
(2012)
Genome Res
, vol.22
, pp. 2163-2175
-
-
Faure, A.J.1
Schmidt, D.2
Watt, S.3
Schwalie, P.C.4
Wilson, M.D.5
Xu, H.6
Ramsay, R.G.7
Odam, D.T.8
Flicek, P.9
-
51
-
-
35548990188
-
We gather together: Insulators and genome organization
-
doi:10.1016/j.gde.2007.08.005
-
Wallace JA, Felsenfeld G. 2007 We gather together: insulators and genome organization. Curr. Opin. Genet. Dev. 17, 400-407. (doi:10.1016/j.gde.2007.08.005)
-
(2007)
Curr. Opin. Genet. Dev
, vol.17
, pp. 400-407
-
-
Wallace, J.A.1
Felsenfeld, G.2
-
52
-
-
65649115253
-
CTCF and its protein partners: Divide and rule
-
doi:10.1242/jcs.039990
-
Zlatanova J, Caiafa P. 2009 CTCF and its protein partners: divide and rule? J. Cell Sci., 1275-1284. (doi:10.1242/jcs.039990)
-
(2009)
J. Cell Sci
, pp. 1275-1284
-
-
Zlatanova, J.1
Caiafa, P.2
-
53
-
-
84866108697
-
Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation
-
doi:10.1074/ jbc.R111.324962
-
Lee BK, Iyer VR. 2012 Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation. J. Biol. Chem. 287, 30 906-30 913. (doi:10.1074/ jbc.R111.324962)
-
(2012)
J. Biol. Chem. 287
, vol.287
, pp. 30906-30913
-
-
Lee, B.K.1
Iyer, V.R.2
-
54
-
-
0034655584
-
Transcriptional repression by the insulator protein CTCF involves histone deacetylases
-
doi:10.1093/ nar/28.8.1707
-
Lutz M et al. 2000 Transcriptional repression by the insulator protein CTCF involves histone deacetylases. Nucleic acids Res. 28, 1707-1713. (doi:10.1093/ nar/28.8.1707)
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1707-1713
-
-
Lutz, M.1
-
55
-
-
0344838438
-
Thyroid hormone-regulated enhancer blocking: Cooperation of CTCF and thyroid hormone receptor
-
doi:10.1093/emboj/cdg147
-
Lutz M et al. 2003 Thyroid hormone-regulated enhancer blocking: cooperation of CTCF and thyroid hormone receptor. EMBO J. 22, 1579-1587. (doi:10.1093/emboj/cdg147)
-
(2003)
EMBO J
, vol.22
, pp. 1579-1587
-
-
Lutz, M.1
-
56
-
-
0842310349
-
CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
-
doi:10.1016/ S1097-2765(04)00029-2
-
Yusufzai TM, Tagami H, Nakatani Y, Felsenfeld G. 2004 CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species. Mol. Cell 13, 291-298. (doi:10.1016/ S1097-2765(04)00029-2)
-
(2004)
Mol. Cell
, vol.13
, pp. 291-298
-
-
Yusufzai, T.M.1
Tagami, H.2
Nakatani, Y.3
Felsenfeld, G.4
-
57
-
-
30044435328
-
The human enhancer blocker CTCbinding factor interacts with the transcription factor Kaiso
-
doi:10. 1074/jbc.M510802200
-
Defossez PA, Kelly KF, Filion GJ, Perez-Torrado R, Magdinier F, Menoni H, Nordgaard CL, Daniel JM, Gilson E. 2005 The human enhancer blocker CTCbinding factor interacts with the transcription factor Kaiso. J. Biol. Chem. 280, 43 017-43 023. (doi:10. 1074/jbc.M510802200)
-
(2005)
J. Biol. Chem
, vol.280
, pp. 43017-43023
-
-
Defossez, P.A.1
Kelly, K.F.2
Filion, G.J.3
Perez-Torrado, R.4
Magdinier, F.5
Menoni, H.6
Nordgaard, C.L.7
Daniel, J.M.8
Gilson, E.9
-
58
-
-
78349252731
-
Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
-
doi:10.1101/gad.1967810
-
Yao H, Brick K, Evrard Y, Xiao T, Camerini-Otero RD, Felsenfeld G. 2010 Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA. Genes Dev. 24, 2543-2555. (doi:10.1101/gad.1967810)
-
(2010)
Genes Dev
, vol.24
, pp. 2543-2555
-
-
Yao, H.1
Brick, K.2
Evrard, Y.3
Xiao, T.4
Camerini-Otero, R.D.5
Felsenfeld, G.6
-
59
-
-
82655189429
-
A coordinated interaction between CTCF and ER in breast cancer cells
-
doi:10.1186/ 1471-2164-12-593
-
Ross-Innes CS, Brown GD, Carroll JS. 2011 A coordinated interaction between CTCF and ER in breast cancer cells. BMC Genomics 12, 593. (doi:10.1186/ 1471-2164-12-593)
-
(2011)
BMC Genomics
, vol.12
, pp. 593
-
-
Ross-Innes, C.S.1
Brown, G.D.2
Carroll, J.S.3
-
60
-
-
80052297694
-
Control of embryonic stem cell lineage commitment by core promoter factor, TAF3
-
doi:10. 1016/j.cell.2011.08.005
-
Liu Z, Scannell DR, Eisen MB, Tjian R. 2011 Control of embryonic stem cell lineage commitment by core promoter factor, TAF3. Cell 146, 720-731. (doi:10. 1016/j.cell.2011.08.005)
-
(2011)
Cell
, vol.146
, pp. 720-731
-
-
Liu, Z.1
Scannell, D.R.2
Eisen, M.B.3
Tjian, R.4
-
61
-
-
70849129503
-
A wave of nascent transcription on activated human genes
-
doi:10.1073/pnas. 0902573106
-
Wada Y et al. 2009 A wave of nascent transcription on activated human genes. Proc. Natl Acad. Sci. USA 106, 18 357-18 361. (doi:10.1073/pnas. 0902573106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 18357-18361
-
-
Wada, Y.1
-
62
-
-
80455176999
-
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
-
doi:10.1038/nature10442
-
Shukla S, Kavak E, Gregory M, Imashimizu M, Shutinoski B, Kashlev M, Oberdoeffer P, Sandberg R. 2011 CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. Nature 479, 74-79. (doi:10.1038/nature10442)
-
(2011)
Nature
, vol.479
, pp. 74-79
-
-
Shukla, S.1
Kavak, E.2
Gregory, M.3
Imashimizu, M.4
Shutinoski, B.5
Kashlev, M.6
Oberdoeffer, P.7
Sandberg, R.8
-
63
-
-
84857051019
-
Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development
-
doi:10.1038/emboj.2011.450
-
Stadhouders R et al. 2012 Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development. EMBO J. 31, 986-999. (doi:10.1038/emboj.2011.450)
-
(2012)
EMBO J
, vol.31
, pp. 986-999
-
-
Stadhouders, R.1
-
64
-
-
77956645612
-
CTCF controls expression and chromatin architecture of the human major histocompatibility complex class II locus
-
doi:10.1128/MCB.00327-10
-
Majumder P, Boss JM. 2010 CTCF controls expression and chromatin architecture of the human major histocompatibility complex class II locus. Mol. Cell. Biol. 30, 4211-4223. (doi:10.1128/MCB.00327-10)
-
(2010)
Mol. Cell. Biol
, vol.30
, pp. 4211-4223
-
-
Majumder, P.1
Boss, J.M.2
-
65
-
-
80054742870
-
Cohesin regulates MHC class II genes through interactions with MHC class II insulators
-
doi:10. 4049/jimmunol.1100688
-
Majumder P, Boss JM. 2011 Cohesin regulates MHC class II genes through interactions with MHC class II insulators. J. Immunol. 187, 4236-4244. (doi:10. 4049/jimmunol.1100688)
-
(2011)
J. Immunol
, vol.187
, pp. 4236-4244
-
-
Majumder, P.1
Boss, J.M.2
-
66
-
-
80755180849
-
The DNA-binding protein CTCF limits proximal Vk recombination and restricts k enhancer interactions to the immunoglobulin k light chain locus
-
doi:10.1016/j.immuni.2011.07.014
-
Ribeiro de Almeida C et al. 2011 The DNA-binding protein CTCF limits proximal Vk recombination and restricts k enhancer interactions to the immunoglobulin k light chain locus. Immunity 35, 501-513. (doi:10.1016/j.immuni.2011.07.014)
-
(2011)
Immunity
, vol.35
, pp. 501-513
-
-
de Almeida, C.R.1
-
67
-
-
84860359396
-
Cohesin and chromatin organisation
-
doi:10.1016/j.gde.2011.11.003
-
Seitan VC, Merkenschlager M. 2012 Cohesin and chromatin organisation. Curr. Opin. Genet. Dev. 22, 93-100. (doi:10.1016/j.gde.2011.11.003)
-
(2012)
Curr. Opin. Genet. Dev
, vol.22
, pp. 93-100
-
-
Seitan, V.C.1
Merkenschlager, M.2
-
68
-
-
78649921825
-
Functional analysis of CTCF during mammalian limb development
-
doi:10.1016/j.devcel.2010.11.009
-
Soshnikova N, Montavon T, Leleu M, Galjart N, Duboule D. 2010 Functional analysis of CTCF during mammalian limb development. Dev. Cell 19, 819-830. (doi:10.1016/j.devcel.2010.11.009)
-
(2010)
Dev. Cell
, vol.19
, pp. 819-830
-
-
Soshnikova, N.1
Montavon, T.2
Leleu, M.3
Galjart, N.4
Duboule, D.5
-
69
-
-
81855227640
-
A regulatory archipelago controls Hox genes transcription in digits
-
doi:10.1016/j.cell.2011.10.023
-
Montavon T, Soshnikova N, Mascrez B, Joye E, Thevenet L, Splinter E, de Laat W, Spitz F, Duboule D. 2011 A regulatory archipelago controls Hox genes transcription in digits. Cell 147, 1132-1145. (doi:10.1016/j.cell.2011.10.023)
-
(2011)
Cell
, vol.147
, pp. 1132-1145
-
-
Montavon, T.1
Soshnikova, N.2
Mascrez, B.3
Joye, E.4
Thevenet, L.5
Splinter, E.6
de Laat, W.7
Spitz, F.8
Duboule, D.9
-
70
-
-
80054737703
-
Regulatory elements required for the activation and repression of the protocadherin-alpha gene cluster
-
doi:10.1073/pnas.1114357108
-
Kehayova P, Monahan K, Chen W, Maniatis T. 2011 Regulatory elements required for the activation and repression of the protocadherin-alpha gene cluster. Proc. Natl Acad. Sci. USA 108, 17 195-17 200. (doi:10.1073/pnas.1114357108)
-
(2011)
Proc. Natl Acad. Sci. USA 108
, vol.108
, pp. 17195-17200
-
-
Kehayova, P.1
Monahan, K.2
Chen, W.3
Maniatis, T.4
-
71
-
-
84861917541
-
Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherinalpha gene expression
-
doi:10.1073/pnas. 1205074109
-
Monahan K, Rudnick ND, Kehayova PD, Pauli F, Newberry KM, Myers RM, Maniatis T. 2012 Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherinalpha gene expression. Proc. Natl Acad. Sci. USA 109, 9125-9130. (doi:10.1073/pnas. 1205074109)
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 9125-9130
-
-
Monahan, K.1
Rudnick, N.D.2
Kehayova, P.D.3
Pauli, F.4
Newberry, K.M.5
Myers, R.M.6
Maniatis, T.7
-
72
-
-
84865724573
-
CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons
-
doi:10.1016/j.celrep.2012.06.014
-
Hirayama T, Tarusawa E, Yoshimura Y, Galjart N, Yagi T. 2012 CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons. Cell Rep. 2, 345-357. (doi:10.1016/j.celrep.2012.06.014)
-
(2012)
Cell Rep
, vol.2
, pp. 345-357
-
-
Hirayama, T.1
Tarusawa, E.2
Yoshimura, Y.3
Galjart, N.4
Yagi, T.5
-
73
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
doi:10.1126/science.1181369
-
Lieberman-Aiden E et al. 2009 Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-293. (doi:10.1126/science.1181369)
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
74
-
-
78049519411
-
Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide
-
doi:10.1038/msb.2010.79
-
Botta M, Haider S, Leung IX, Lio P, Mozziconacci J. 2010 Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide. Mol. Syst. Biol. 6, 426. (doi:10.1038/msb.2010.79)
-
(2010)
Mol. Syst. Biol
, vol.6
, pp. 426
-
-
Botta, M.1
Haider, S.2
Leung, I.X.3
Lio, P.4
Mozziconacci, J.5
-
75
-
-
70449103609
-
An oestrogen-receptor-abound human chromatin interactome
-
doi:10.1038/nature08497
-
Fullwood MJ et al. 2009 An oestrogen-receptor-abound human chromatin interactome. Nature 462, 58-64. (doi:10.1038/nature08497)
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
-
76
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
doi:10.1038/nature11279)
-
Sanyal A, Lajoie BR, Jain G, Dekker J. 2012 The long-range interaction landscape of gene promoters. Nature 489, 109-113. (doi:10.1038/nature11279)
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
77
-
-
80054984337
-
Probabilistic modeling of Hi- C contact maps eliminates systematic biases to characterize global chromosomal architecture
-
doi:10.1038/ng.947
-
Yaffe E, Tanay A. 2011 Probabilistic modeling of Hi- C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nat. Genet. 43, 1059-1065. (doi:10.1038/ng.947)
-
(2011)
Nat. Genet
, vol.43
, pp. 1059-1065
-
-
Yaffe, E.1
Tanay, A.2
-
78
-
-
79952294070
-
A chromatin insulator driving threedimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber
-
doi:10.1073/pnas.1002059108
-
Comet I, Schuettengruber B, Sexton T, Cavalli G. 2011 A chromatin insulator driving threedimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber. Proc. Natl Acad. Sci. USA. 108, 2294-2299. (doi:10.1073/pnas.1002059108)
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 2294-2299
-
-
Comet, I.1
Schuettengruber, B.2
Sexton, T.3
Cavalli, G.4
-
79
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
doi:10.1038/nature11049
-
Nora EP et al. 2012 Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485, 381-385. (doi:10.1038/nature11049)
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
-
80
-
-
84869502375
-
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
-
doi:10.1038/ni. 2432
-
Lin YC et al. 2012 Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate. Nat. Immunol. 13, 1196-1204. (doi:10.1038/ni. 2432)
-
(2012)
Nat. Immunol
, vol.13
, pp. 1196-1204
-
-
Lin, Y.C.1
-
81
-
-
84866120986
-
Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages
-
doi:10.1093/nar/gks501
-
Lan X, Witt H, Katsumura K, Ye Z, Wang Q, Bresnick EH, Farnham PJ, Jin VX. 2012 Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages. Nucleic acids Res. 40, 7690-7704. (doi:10.1093/nar/gks501)
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 7690-7704
-
-
Lan, X.1
Witt, H.2
Katsumura, K.3
Ye, Z.4
Wang, Q.5
Bresnick, E.H.6
Farnham, P.J.7
Jin, V.X.8
|