-
1
-
-
34548801789
-
The molecular basis of eukaryotic transcription
-
Kornberg RD (2007) The molecular basis of eukaryotic transcription. Proc Natl Acad Sci USA 104:12955-12961.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12955-12961
-
-
Kornberg, R.D.1
-
2
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
DOI 10.1038/416499a
-
Maniatis T, Reed R (2002) An extensive network of coupling among gene expression machines. Nature 416:499-506. (Pubitemid 34288845)
-
(2002)
Nature
, vol.416
, Issue.6880
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
3
-
-
0037154982
-
A unified theory of gene expression
-
Orphanides G, Reinberg D (2002) A unified theory of gene expression. Cell 108:439-451.
-
(2002)
Cell
, vol.108
, pp. 439-451
-
-
Orphanides, G.1
Reinberg, D.2
-
4
-
-
33751090746
-
Phosphorylation and functions of the RNA polymerase II CTD
-
Phatnani HP, Greenleaf AL (2006) Phosphorylation and functions of the RNA polymerase II CTD. Genes Dev 20:2922-2936.
-
(2006)
Genes Dev
, vol.20
, pp. 2922-2936
-
-
Phatnani, H.P.1
Greenleaf, A.L.2
-
5
-
-
0037012881
-
Large-scale transcriptional activity in chromosomes 21 and 22
-
Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL, et al. (2002) Large-scale transcriptional activity in chromosomes 21 and 22. Science 296:916-919.
-
(2002)
Science
, vol.296
, pp. 916-919
-
-
Kapranov, P.1
Cawley, S.E.2
Drenkow, J.3
Bekiranov, S.4
Strausberg, R.L.5
-
6
-
-
34447098370
-
A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
-
DOI 10.1016/j.cell.2007.05.042, PII S0092867407006812
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA (2007) A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130:77-88. (Pubitemid 47031323)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
7
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129:823-837. (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
8
-
-
41349094797
-
Transcription regulation through promoter-proximal pausing of RNA polymerase II
-
Core LJ, Lis JT (2008) Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science 319:1791-1792.
-
(2008)
Science
, vol.319
, pp. 1791-1792
-
-
Core, L.J.1
Lis, J.T.2
-
9
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322:1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
10
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA (2008) Divergent transcription from active promoters. Science 322:1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
11
-
-
0037049641
-
The transcription cycle of RNA polymerase II in living cells
-
DOI 10.1083/jcb.200206019
-
Kimura H, Sugaya K, Cook PR (2002) The transcription cycle of RNA polymerase II in living cells. J Cell Biol 159:777-782. (Pubitemid 36008360)
-
(2002)
Journal of Cell Biology
, vol.159
, Issue.5
, pp. 777-782
-
-
Kimura, H.1
Sugaya, K.2
Cook, P.R.3
-
12
-
-
34548507690
-
In vivo dynamics of RNA polymerase II transcription
-
DOI 10.1038/nsmb1280, PII NSMB1280
-
Darzacq X, Shav-Tal Y, de Turris V, Brody Y, Shenoy SM, et al. (2007) In vivo dynamics of RNA polymerase II transcription. Nat Struct Mol Biol 14:796-806. (Pubitemid 47373828)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.9
, pp. 796-806
-
-
Darzacq, X.1
Shav-Tal, Y.2
De Turris, V.3
Brody, Y.4
Shenoy, S.M.5
Phair, R.D.6
Singer, R.H.7
-
13
-
-
34249307315
-
Nuclear organization of the genome and the potential for gene regulation
-
DOI 10.1038/nature05916, PII NATURE05916
-
Fraser P, Bickmore W (2007) Nuclear organization of the genome and the potential for gene regulation. Nature 447:413-417. (Pubitemid 46816747)
-
(2007)
Nature
, vol.447
, Issue.7143
, pp. 413-417
-
-
Fraser, P.1
Bickmore, W.2
-
14
-
-
37349099448
-
Intranuclear Distribution and Local Dynamics of RNA Polymerase II during Transcription Activation
-
DOI 10.1016/j.molcel.2007.10.017, PII S1097276507006995
-
Yao J, Ardehali MB, Fecko CJ, Webb WW, Lis JT (2007) Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. Mol Cell 28:978-990. (Pubitemid 350297022)
-
(2007)
Molecular Cell
, vol.28
, Issue.6
, pp. 978-990
-
-
Yao, J.1
Ardehali, M.B.2
Fecko, C.J.3
Webb, W.W.4
Lis, J.T.5
-
15
-
-
34547764936
-
Show and tell: Visualizing gene expression in living cells
-
Rafalska-Metcalf IU, Janicki SM (2007) Show and tell: Visualizing gene expression in living cells. J Cell Sci 120:2301-2307.
-
(2007)
J Cell Sci
, vol.120
, pp. 2301-2307
-
-
Rafalska-Metcalf, I.U.1
Janicki, S.M.2
-
16
-
-
33645312379
-
Circuitry of nuclear factor kappaB signaling
-
Hoffmann A, Baltimore D (2006) Circuitry of nuclear factor kappaB signaling. Immunol Rev 210:171-186.
-
(2006)
Immunol Rev
, vol.210
, pp. 171-186
-
-
Hoffmann, A.1
Baltimore, D.2
-
17
-
-
33751161897
-
Histone deacetylase inhibitor reduces monocyte adhesion to endothelium through the suppression of vascular cell adhesion molecule-1 expression
-
DOI 10.1161/01.ATV.0000247247.89787.e7, PII 0004360520061200000012
-
Inoue K, Kobayashi M, Yano K, Miura M, Izumi A, et al. (2006) Histone deacetylase inhibitor reduces monocyte adhesion to endothelium through the suppression of vascular cell adhesion molecule-1 expression. Arterioscler Thromb Vasc Biol 26:2652-2659. (Pubitemid 44777278)
-
(2006)
Arteriosclerosis, Thrombosis, and Vascular Biology
, vol.26
, Issue.12
, pp. 2652-2659
-
-
Inoue, K.1
Kobayashi, M.2
Yano, K.3
Miura, M.4
Izumi, A.5
Mataki, C.6
Doi, T.7
Hamakubo, T.8
Reid, P.C.9
Hume, D.A.10
Yoshida, M.11
Aird, W.C.12
Kodama, T.13
Minami, T.14
-
18
-
-
22144467302
-
Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping
-
DOI 10.1016/j.tig.2005.06.007, PII S0168952505001678
-
Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, et al. (2005) Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping. Trends Genet 21:466-475. (Pubitemid 40981796)
-
(2005)
Trends in Genetics
, vol.21
, Issue.8
, pp. 466-475
-
-
Royce, T.E.1
Rozowsky, J.S.2
Bertone, P.3
Samanta, M.4
Stolc, V.5
Weissman, S.6
Snyder, M.7
Gerstein, M.8
-
19
-
-
39149121436
-
Cohesin mediates transcriptional insulation by CCCTC-binding factor
-
DOI 10.1038/nature06634, PII NATURE06634
-
Wendt KS, Yoshida K, Itoh T, Bando M, Koch B, et al. (2008) Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 451:796-801. (Pubitemid 351253176)
-
(2008)
Nature
, vol.451
, Issue.7180
, pp. 796-801
-
-
Wendt, K.S.1
Yoshida, K.2
Itoh, T.3
Bando, M.4
Koch, B.5
Schirghuber, E.6
Tsutsumi, S.7
Nagae, G.8
Ishihara, K.9
Mishiro, T.10
Yahata, K.11
Imamoto, F.12
Aburatani, H.13
Nakao, M.14
Imamoto, N.15
Maeshima, K.16
Shirahige, K.17
Peters, J.-M.18
-
20
-
-
38849121606
-
Cohesins functionally associate with CTCF on mammalian chromosome arms
-
Parelho V, Hadjur S, Spivakov M, Leleu M, Sauer S, et al. (2008) Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell 132:422-433.
-
(2008)
Cell
, vol.132
, pp. 422-433
-
-
Parelho, V.1
Hadjur, S.2
Spivakov, M.3
Leleu, M.4
Sauer, S.5
-
21
-
-
0032562720
-
Visualization of single RNA transcripts in situ
-
DOI 10.1126/science.280.5363.585
-
Femino AM, Fay FS, Fogarty K, Singer RH (1998) Visualization of single RNA transcripts in situ. Science 280:585-590. (Pubitemid 28227761)
-
(1998)
Science
, vol.280
, Issue.5363
, pp. 585-590
-
-
Femino, A.M.1
Fay, F.S.2
Fogarty, K.3
Singer, R.H.4
-
22
-
-
53249083943
-
The role of specialized transcription factories in chromosome pairing
-
Xu M, Cook PR (2008) The role of specialized transcription factories in chromosome pairing. Biochim Biophys Acta 1783:2155-2160.
-
(2008)
Biochim Biophys Acta
, vol.1783
, pp. 2155-2160
-
-
Xu, M.1
Cook, P.R.2
-
23
-
-
0028837312
-
The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced
-
Tennyson CN, Klamut HJ, Worton RG (1995) The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced. Nat Genet 9:184-190.
-
(1995)
Nat Genet
, vol.9
, pp. 184-190
-
-
Tennyson, C.N.1
Klamut, H.J.2
Worton, R.G.3
-
24
-
-
44149124228
-
Cracking the RNA polymerase II CTD code
-
Egloff S, Murphy S (2008) Cracking the RNA polymerase II CTD code. Trends Genet 24:280-288.
-
(2008)
Trends Genet
, vol.24
, pp. 280-288
-
-
Egloff, S.1
Murphy, S.2
-
25
-
-
48249153426
-
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
-
Fu Y, Sinha M, Peterson CL, Weng Z (2008) The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet 4:e1000138.
-
(2008)
PLoS Genet
, vol.4
-
-
Fu, Y.1
Sinha, M.2
Peterson, C.L.3
Weng, Z.4
-
26
-
-
33845643952
-
A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional
-
Tardiff DF, Lacadie SA, Rosbash M (2006) A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional. Mol Cell 24:917-929.
-
(2006)
Mol Cell
, vol.24
, pp. 917-929
-
-
Tardiff, D.F.1
Lacadie, S.A.2
Rosbash, M.3
-
27
-
-
4644334742
-
Multiple links between transcription and splicing
-
Kornblihtt AR, de la Mata M, Fededa JP, Munoz MJ, Nogues G (2004) Multiple links between transcription and splicing. RNA 10:1489-1498.
-
(2004)
RNA
, vol.10
, pp. 1489-1498
-
-
Kornblihtt, A.R.1
De La Mata, M.2
Fededa, J.P.3
Munoz, M.J.4
Nogues, G.5
-
28
-
-
33745132168
-
Functional coupling of RNAP II transcription to spliceosome assembly
-
Das R, Dufu K, Romney B, Feldt M, Elenko M, et al. (2006) Functional coupling of RNAP II transcription to spliceosome assembly. Genes Dev 20:1100-1109.
-
(2006)
Genes Dev
, vol.20
, pp. 1100-1109
-
-
Das, R.1
Dufu, K.2
Romney, B.3
Feldt, M.4
Elenko, M.5
-
29
-
-
46149113242
-
CTCF physically links cohesin to chromatin
-
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, et al. (2008) CTCF physically links cohesin to chromatin. Proc Natl Acad Sci USA 105:8309-8314.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 8309-8314
-
-
Rubio, E.D.1
Reiss, D.J.2
Welcsh, P.L.3
Disteche, C.M.4
Filippova, G.N.5
-
30
-
-
33747587864
-
Model-based analysis of tiling-arrays for ChIP-chip
-
Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, et al. (2006) Model-based analysis of tiling-arrays for ChIP-chip. Proc Natl Acad Sci USA 103:12457-12462.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12457-12462
-
-
Johnson, W.E.1
Li, W.2
Meyer, C.A.3
Gottardo, R.4
Carroll, J.S.5
|