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Volumn 14, Issue 12, 2013, Pages

Architecture of epigenetic reprogramming following Twist1-mediated epithelial-mesenchymal transition

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; FIZZY RELATED PROTEIN; HISTONE LYSINE METHYLTRANSFERASE; HISTONE LYSINE METHYLTRANSFERASE H3K27ME3; HISTONE LYSINE METHYLTRANSFERASE H3K4ME3; MESSENGER RNA; PLATELET DERIVED GROWTH FACTOR ALPHA RECEPTOR; POLYCOMB REPRESSIVE COMPLEX 2; PROTEIN ESRP1; SERINE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR EZH1; TRANSCRIPTION FACTOR EZH2; TRANSCRIPTION FACTOR TWIST; TRANSCRIPTION FACTOR TWIST1; UNCLASSIFIED DRUG; HISTONE; NUCLEAR PROTEIN; TWIST1 PROTEIN, HUMAN;

EID: 84890819884     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2013-14-12-r144     Document Type: Article
Times cited : (73)

References (57)
  • 1
    • 70450198396 scopus 로고    scopus 로고
    • Epithelial-mesenchymal transitions in development and disease
    • Thiery JP, Acloque H, Huang RY, Nieto MA: Epithelial-mesenchymal transitions in development and disease. Cell 2009, 139:871-890.
    • (2009) Cell , vol.139 , pp. 871-890
    • Thiery, J.P.1    Acloque, H.2    Huang, R.Y.3    Nieto, M.A.4
  • 4
    • 65549141305 scopus 로고    scopus 로고
    • Acquisition of epithelial-mesenchymal transition phenotype of gemcitabine-resistant pancreatic cancer cells is linked with activation of the notch signaling pathway
    • Wang Z, Li Y, Kong D, Banerjee S, Ahmad A, Azmi AS, Ali S, Abbruzzese JL, Gallick GE, Sarkar FH: Acquisition of epithelial-mesenchymal transition phenotype of gemcitabine-resistant pancreatic cancer cells is linked with activation of the notch signaling pathway. Cancer Res 2009, 69:2400-2407.
    • (2009) Cancer Res , vol.69 , pp. 2400-2407
    • Wang, Z.1    Li, Y.2    Kong, D.3    Banerjee, S.4    Ahmad, A.5    Azmi, A.S.6    Ali, S.7    Abbruzzese, J.L.8    Gallick, G.E.9    Sarkar, F.H.10
  • 8
    • 83055182019 scopus 로고    scopus 로고
    • Epigenetic regulation of normal human mammary cell type-specific miRNAs
    • Vrba L, Garbe JC, Stampfer MR, Futscher BW: Epigenetic regulation of normal human mammary cell type-specific miRNAs. Genome Res 2011, 21:2026-2037.
    • (2011) Genome Res , vol.21 , pp. 2026-2037
    • Vrba, L.1    Garbe, J.C.2    Stampfer, M.R.3    Futscher, B.W.4
  • 9
    • 79961023271 scopus 로고    scopus 로고
    • Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition
    • McDonald OG, Wu H, Timp W, Doi A, Feinberg AP: Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition. Nat Struct Mol Biol 2011, 18:867-874.
    • (2011) Nat Struct Mol Biol , vol.18 , pp. 867-874
    • McDonald, O.G.1    Wu, H.2    Timp, W.3    Doi, A.4    Feinberg, A.P.5
  • 10
    • 77950409567 scopus 로고    scopus 로고
    • Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing
    • Ruike Y, Imanaka Y, Sato F, Shimizu K, Tsujimoto G: Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing. BMC Genomics 2010, 11:137.
    • (2010) BMC Genomics , vol.11 , pp. 137
    • Ruike, Y.1    Imanaka, Y.2    Sato, F.3    Shimizu, K.4    Tsujimoto, G.5
  • 12
    • 84865169224 scopus 로고    scopus 로고
    • Epigenetic reprogramming and posttranscriptional regulation during the epithelial-mesenchymal transition
    • Wu CY, Tsai YP, Wu MZ, Teng SC, Wu KJ: Epigenetic reprogramming and posttranscriptional regulation during the epithelial-mesenchymal transition. Trends Genet 2012, 28:454-463.
    • (2012) Trends Genet , vol.28 , pp. 454-463
    • Wu, C.Y.1    Tsai, Y.P.2    Wu, M.Z.3    Teng, S.C.4    Wu, K.J.5
  • 17
    • 78751693154 scopus 로고    scopus 로고
    • Replication timing-related and gene body-specific methylation of active human genes
    • Aran D, Toperoff G, Rosenberg M, Hellman A: Replication timing-related and gene body-specific methylation of active human genes. Hum Mol Genet 2011, 20:670-680.
    • (2011) Hum Mol Genet , vol.20 , pp. 670-680
    • Aran, D.1    Toperoff, G.2    Rosenberg, M.3    Hellman, A.4
  • 18
    • 77249148019 scopus 로고    scopus 로고
    • Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
    • Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W: Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature 2010, 463:1101-1105.
    • (2010) Nature , vol.463 , pp. 1101-1105
    • Popp, C.1    Dean, W.2    Feng, S.3    Cokus, S.J.4    Andrews, S.5    Pellegrini, M.6    Jacobsen, S.E.7    Reik, W.8
  • 19
    • 43149125426 scopus 로고    scopus 로고
    • Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines
    • Shann YJ, Cheng C, Chiao CH, Chen DT, Li PH, Hsu MT: Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines. Genome Res 2008, 18:791-801.
    • (2008) Genome Res , vol.18 , pp. 791-801
    • Shann, Y.J.1    Cheng, C.2    Chiao, C.H.3    Chen, D.T.4    Li, P.H.5    Hsu, M.T.6
  • 20
    • 80053493397 scopus 로고    scopus 로고
    • Large-scale methylation domains mark a functional subset of neuronally expressed genes
    • Schroeder DI, Lott P, Korf I, LaSalle JM: Large-scale methylation domains mark a functional subset of neuronally expressed genes. Genome Res 2011, 21:1583-1591.
    • (2011) Genome Res , vol.21 , pp. 1583-1591
    • Schroeder, D.I.1    Lott, P.2    Korf, I.3    LaSalle, J.M.4
  • 23
    • 54449085718 scopus 로고    scopus 로고
    • Sustained induction of epithelial to mesenchymal transition activates DNA methylation of genes silenced in basal-like breast cancers
    • Dumont N, Wilson MB, Crawford YG, Reynolds PA, Sigaroudinia M, Tlsty TD: Sustained induction of epithelial to mesenchymal transition activates DNA methylation of genes silenced in basal-like breast cancers. Proc Natl Acad Sci USA 2008, 105:14867-14872.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14867-14872
    • Dumont, N.1    Wilson, M.B.2    Crawford, Y.G.3    Reynolds, P.A.4    Sigaroudinia, M.5    Tlsty, T.D.6
  • 24
    • 84870733829 scopus 로고    scopus 로고
    • Conserved DNA methylation patterns in healthy blood cells and extensive changes in leukemia measured by a new quantitative technique
    • Jelinek J, Liang S, Lu Y, He R, Ramagli LS, Shpall EJ, Estecio MR, Issa JP: Conserved DNA methylation patterns in healthy blood cells and extensive changes in leukemia measured by a new quantitative technique. Epigenetics 2012, 7:1368-1378.
    • (2012) Epigenetics , vol.7 , pp. 1368-1378
    • Jelinek, J.1    Liang, S.2    Lu, Y.3    He, R.4    Ramagli, L.S.5    Shpall, E.J.6    Estecio, M.R.7    Issa, J.P.8
  • 26
    • 77149144805 scopus 로고    scopus 로고
    • Mesenchymal-epithelial transition in epithelial response to injury: the role of Foxc2
    • Hader C, Marlier A, Cantley L: Mesenchymal-epithelial transition in epithelial response to injury: the role of Foxc2. Oncogene 2010, 29:1031-1040.
    • (2010) Oncogene , vol.29 , pp. 1031-1040
    • Hader, C.1    Marlier, A.2    Cantley, L.3
  • 30
    • 44449111555 scopus 로고    scopus 로고
    • Loss of Ecadherin promotes metastasis via multiple downstream transcriptional pathways
    • Onder TT, Gupta PB, Mani SA, Yang J, Lander ES, Weinberg RA: Loss of Ecadherin promotes metastasis via multiple downstream transcriptional pathways. Cancer Res 2008, 68:3645-3654.
    • (2008) Cancer Res , vol.68 , pp. 3645-3654
    • Onder, T.T.1    Gupta, P.B.2    Mani, S.A.3    Yang, J.4    Lander, E.S.5    Weinberg, R.A.6
  • 31
    • 49249121155 scopus 로고    scopus 로고
    • Epigenetic silencing of microRNA-34b/c and B-cell translocation gene 4 is associated with CpG island methylation in colorectal cancer
    • Toyota M, Suzuki H, Sasaki Y, Maruyama R, Imai K, Shinomura Y, Tokino T: Epigenetic silencing of microRNA-34b/c and B-cell translocation gene 4 is associated with CpG island methylation in colorectal cancer. Cancer Res 2008, 68:4123-4132.
    • (2008) Cancer Res , vol.68 , pp. 4123-4132
    • Toyota, M.1    Suzuki, H.2    Sasaki, Y.3    Maruyama, R.4    Imai, K.5    Shinomura, Y.6    Tokino, T.7
  • 35
    • 84867795377 scopus 로고    scopus 로고
    • Snail Represses the Splicing Regulator ESRP1 to Promote Epithelial-Mesenchymal Transition
    • Reinke LM, Xu Y, Cheng C: Snail Represses the Splicing Regulator ESRP1 to Promote Epithelial-Mesenchymal Transition. J Biol Chem 2012, 287:36435-36442.
    • (2012) J Biol Chem , vol.287 , pp. 36435-36442
    • Reinke, L.M.1    Xu, Y.2    Cheng, C.3
  • 40
    • 80052222327 scopus 로고    scopus 로고
    • Contextspecific regulation of NF-kappaB target gene expression by EZH2 in breast cancers
    • Lee ST, Li Z, Wu Z, Aau M, Guan P, Karuturi RK, Liou YC, Yu Q: Contextspecific regulation of NF-kappaB target gene expression by EZH2 in breast cancers. Mol Cell 2011, 43:798-810.
    • (2011) Mol Cell , vol.43 , pp. 798-810
    • Lee, S.T.1    Li, Z.2    Wu, Z.3    Aau, M.4    Guan, P.5    Karuturi, R.K.6    Liou, Y.C.7    Yu, Q.8
  • 41
    • 34247625135 scopus 로고    scopus 로고
    • Pharmacologic disruption of Polycomb-repressive complex 2-mediated gene repression selectively induces apoptosis in cancer cells
    • Tan J, Yang X, Zhuang L, Jiang X, Chen W, Lee PL, Karuturi RK, Tan PB, Liu ET, Yu Q: Pharmacologic disruption of Polycomb-repressive complex 2-mediated gene repression selectively induces apoptosis in cancer cells. Genes Dev 2007, 21:1050-1063.
    • (2007) Genes Dev , vol.21 , pp. 1050-1063
    • Tan, J.1    Yang, X.2    Zhuang, L.3    Jiang, X.4    Chen, W.5    Lee, P.L.6    Karuturi, R.K.7    Tan, P.B.8    Liu, E.T.9    Yu, Q.10
  • 42
    • 84858414016 scopus 로고    scopus 로고
    • Regulated noise in the epigenetic landscape of development and disease
    • Pujadas E, Feinberg AP: Regulated noise in the epigenetic landscape of development and disease. Cell 2012, 148:1123-1131.
    • (2012) Cell , vol.148 , pp. 1123-1131
    • Pujadas, E.1    Feinberg, A.P.2
  • 45
    • 34347233479 scopus 로고    scopus 로고
    • DNA methylation and complete transcriptional silencing of cancer genes persist after depletion of EZH2
    • McGarvey KM, Greene E, Fahrner JA, Jenuwein T, Baylin SB: DNA methylation and complete transcriptional silencing of cancer genes persist after depletion of EZH2. Cancer Res 2007, 67:5097-5102.
    • (2007) Cancer Res , vol.67 , pp. 5097-5102
    • McGarvey, K.M.1    Greene, E.2    Fahrner, J.A.3    Jenuwein, T.4    Baylin, S.B.5
  • 47
    • 79952227361 scopus 로고    scopus 로고
    • CD44 splice isoform switching in human and mouse epithelium is essential for epithelial-mesenchymal transition and breast cancer progression
    • Brown RL, Reinke LM, Damerow MS, Perez D, Chodosh LA, Yang J, Cheng C: CD44 splice isoform switching in human and mouse epithelium is essential for epithelial-mesenchymal transition and breast cancer progression. J Clin Invest 2011, 121:1064-1074.
    • (2011) J Clin Invest , vol.121 , pp. 1064-1074
    • Brown, R.L.1    Reinke, L.M.2    Damerow, M.S.3    Perez, D.4    Chodosh, L.A.5    Yang, J.6    Cheng, C.7
  • 51
    • 84923897833 scopus 로고    scopus 로고
    • UCSC genome browser
    • UCSC genome browser. [http://genome.ucsc.edu/]
  • 52
    • 84923897832 scopus 로고    scopus 로고
    • Abcam protocol for chromatin immunoprecipitation
    • Abcam protocol for chromatin immunoprecipitation. [http://www.abcam. com/ps/pdf/protocols/x_chip_protocol.pdf]
  • 54
    • 67650711619 scopus 로고    scopus 로고
    • A clustering approach for identification of enriched domains from histone modification ChIPSeq data
    • Zang C, Schones DE, Zeng C, Cui K, Zhao K, Peng W: A clustering approach for identification of enriched domains from histone modification ChIPSeq data. Bioinformatics 2009, 25:1952-1958.
    • (2009) Bioinformatics , vol.25 , pp. 1952-1958
    • Zang, C.1    Schones, D.E.2    Zeng, C.3    Cui, K.4    Zhao, K.5    Peng, W.6
  • 55
    • 69449102464 scopus 로고    scopus 로고
    • Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
    • Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K: Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 2009, 138:1019-1031.
    • (2009) Cell , vol.138 , pp. 1019-1031
    • Wang, Z.1    Zang, C.2    Cui, K.3    Schones, D.E.4    Barski, A.5    Peng, W.6    Zhao, K.7
  • 56
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • da Huang W, Sherman BT, Lempicki RA: Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4:44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 57
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • da Huang W, Sherman BT, Lempicki RA: Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 2009, 37:1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.