-
1
-
-
0031815749
-
How do small single-domain proteins fold?
-
Jackson, S. E. (1998). How do small single-domain proteins fold? Fold. Des. 3, R81-R91.
-
(1998)
Fold. Des.
, vol.3
-
-
Jackson, S.E.1
-
2
-
-
0023517017
-
Effect of point mutations on the folding of globular proteins
-
Matthews, C. R. (1987). Effect of point mutations on the folding of globular proteins. Meth. Enzymol. 154, 498-511.
-
(1987)
Meth. Enzymol.
, vol.154
, pp. 498-511
-
-
Matthews, C.R.1
-
3
-
-
0024358426
-
Mapping the transition state and pathway of protein folding by protein engineering
-
Matouschek, A., Kellis, J. T., Jr., Serrano, L. & Fersht, A. R. (1989). Mapping the transition state and pathway of protein folding by protein engineering. Nature 340, 122-126.
-
(1989)
Nature
, vol.340
, pp. 122-126
-
-
Matouschek, A.1
Kellis Jr., J.T.2
Serrano, L.3
Fersht, A.R.4
-
4
-
-
0027382315
-
Structure of the hydrophobic core in the transition state for folding of the chymotrypsin inhibitor-2: A critical test of the protein engineering method of analysis
-
Jackson, S. E., elMasry, N. & Fersht, A. R. (1993). Structure of the hydrophobic core in the transition state for folding of the chymotrypsin inhibitor-2: A critical test of the protein engineering method of analysis. Biochemistry 32, 11270-11278.
-
(1993)
Biochemistry
, vol.32
, pp. 11270-11278
-
-
Jackson, S.E.1
El Masry, N.2
Fersht, A.R.3
-
5
-
-
0027313673
-
Pathways of protein folding
-
Matthews, C. R. (1993). Pathways of protein folding. Annu. Rev. Biochem. 62, 653-683.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 653-683
-
-
Matthews, C.R.1
-
6
-
-
0028082357
-
Probing the structure of folding intermediates
-
Evans, P. A. & Radford, S. E. (1994). Probing the structure of folding intermediates. Curr. Opin. Struct. Biol. 4, 100-106.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 100-106
-
-
Evans, P.A.1
Radford, S.E.2
-
7
-
-
0031055942
-
Kinetic role of early intermediates in protein folding
-
Roder, H. & Coló n, W. (1997). Kinetic role of early intermediates in protein folding. Curr. Opin. Struct. Biol. 7, 15-28.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 15-28
-
-
Roder, H.1
Colón, W.2
-
8
-
-
0033080081
-
Is protein folding hierarchic? II. Folding intermediates and transition states
-
Baldwin, R. L. & Rose, G. D. (1999). Is protein folding hierarchic? II. Folding intermediates and transition states. Trends Biochem. Sci. 24, 77-83.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 77-83
-
-
Baldwin, R.L.1
Rose, G.D.2
-
9
-
-
0037949453
-
Early stages of protein folding
-
In Mechanisms of protein folding (Pain, R. H., ed.), Oxford University Press, New York
-
Roder, H., Elöve, G. A. & Shastry, R. M. C. (2000). Early stages of protein folding. In Mechanisms of protein folding (Pain, R. H., ed.), pp. 65-104. Oxford University Press, New York.
-
(2000)
, pp. 65-104
-
-
Roder, H.1
Elöve, G.A.2
Shastry, R.M.C.3
-
10
-
-
0015918873
-
Kinetics of unfolding and refolding of proteins III
-
Tanford, C., Aune, K. C. & Ikai, A. (1973). Kinetics of unfolding and refolding of proteins III. Results for lysozyme. J. Mol. Biol. 73, 185-197.
-
(1973)
Results for lysozyme. J. Mol. Biol.
, vol.73
, pp. 185-197
-
-
Tanford, C.1
Aune, K.C.2
Ikai, A.3
-
11
-
-
0020024242
-
Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding
-
Kim, P. S. & Baldwin, R. L. (1982). Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding. Annu. Rev. Biochem. 51, 459-489.
-
(1982)
Annu. Rev. Biochem.
, vol.51
, pp. 459-489
-
-
Kim, P.S.1
Baldwin, R.L.2
-
12
-
-
0032844656
-
Methods for exploring early events in protein folding
-
Roder, H. & Shastry, M. C. R. (1999). Methods for exploring early events in protein folding. Curr. Opin. Struct. Biol. 9, 620-626.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 620-626
-
-
Roder, H.1
Shastry, M.C.R.2
-
13
-
-
0022965254
-
Protein folding kinetics by combined use of rapid mixing techniques and NMR observation of individual amide protons
-
Roder, H. & Wüthrich, K. (1986). Protein folding kinetics by combined use of rapid mixing techniques and NMR observation of individual amide protons. Proteins 1, 34-42.
-
(1986)
Proteins
, vol.1
, pp. 34-42
-
-
Roder, H.1
Wüthrich, K.2
-
14
-
-
0023705432
-
Structural characterization of folding intermediates in cytochrome c by Hexchange labelling and proton NMR
-
Roder, H., Elöve, G. A. & Englander, S. W. (1988). Structural characterization of folding intermediates in cytochrome c by Hexchange labelling and proton NMR. Nature 335, 700-704.
-
(1988)
Nature
, vol.335
, pp. 700-704
-
-
Roder, H.1
Elöve, G.A.2
Englander, S.W.3
-
15
-
-
0023758305
-
NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A
-
Udgaonkar, J. B. & Baldwin, R. L. (1988). NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A. Nature 335, 694-699.
-
(1988)
Nature
, vol.335
, pp. 694-699
-
-
Udgaonkar, J.B.1
Baldwin, R.L.2
-
16
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
Bryngelson, J. D., Onuchic, J. N., Socci, N. D. & Wolynes, P. G. (1995). Funnels, pathways, and the energy landscape of protein folding: A synthesis. Proteins 21, 167-195.
-
(1995)
Proteins
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
17
-
-
0032842870
-
The fundamentals of protein folding: bringing together theory and experiment
-
Dobson, C. M. & Karplus, M. (1999). The fundamentals of protein folding: bringing together theory and experiment. Curr. Opin. Struct. Biol. 9, 92-101.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 92-101
-
-
Dobson, C.M.1
Karplus, M.2
-
19
-
-
0027131947
-
Fast events in protein folding initiated by nanosecond laser photolysis
-
Jones, C. M., Henry, E. R., Hu, Y. et al. (1993). Fast events in protein folding initiated by nanosecond laser photolysis. Proc. Natl Acad. Sci. USA 90, 11860-11864.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 11860-11864
-
-
Jones, C.M.1
Henry, E.R.2
Hu, Y.3
-
20
-
-
0032241430
-
Fast events in protein folding: the time evolution of primary processes
-
Callender, R. H., Dyer, R. B., Gilmanshin, R. & Woodruff, W. H. (1998). Fast events in protein folding: the time evolution of primary processes. Annu. Rev. Phys. Chem. 49, 173-202.
-
(1998)
Annu. Rev. Phys. Chem.
, vol.49
, pp. 173-202
-
-
Callender, R.H.1
Dyer, R.B.2
Gilmanshin, R.3
Woodruff, W.H.4
-
21
-
-
0001022344
-
The fast protein folding problem
-
Gruebele, M. (1999). The fast protein folding problem. Annu. Rev. Phys. Chem. 50, 485-516.
-
(1999)
Annu. Rev. Phys. Chem.
, vol.50
, pp. 485-516
-
-
Gruebele, M.1
-
22
-
-
0033624685
-
Fast kinetics and mechanisms in protein folding
-
Eaton, W. A., Munoz, V., Hagen, S. J. et al. (2000). Fast kinetics and mechanisms in protein folding. Annu. Rev. Biophys. Biomol. Struct. 29, 327-359.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 327-359
-
-
Eaton, W.A.1
Munoz, V.2
Hagen, S.J.3
-
23
-
-
0037202168
-
Light-induced helix formation
-
Huang, C. Y., He, S., DeGrado, W. F., McCafferty, D. G. & Gai, F. (2002). Light-induced helix formation. J. Am. Chem. Soc. 124, 12674-12675.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 12674-12675
-
-
Huang, C.Y.1
He, S.2
DeGrado, W.F.3
McCafferty, D.G.4
Gai, F.5
-
24
-
-
1342281633
-
The protein folding 'speed limit'
-
Kubelka, J., Hofrichter, J. & Eaton, W. A. (2004). The protein folding 'speed limit'. Curr Opin Struct Biol 14, 76-88.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 76-88
-
-
Kubelka, J.1
Hofrichter, J.2
Eaton, W.A.3
-
25
-
-
0031026206
-
Folding of cytochrome c initiated by submillisecond mixing
-
Takahashi, S., Yeh, S.-R., Das, T. K., Chan, C.-K., Gottfried, D. S. & Rousseau, D. L. (1997). Folding of cytochrome c initiated by submillisecond mixing. Nature Struct. Biol. 4, 44-50.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 44-50
-
-
Takahashi, S.1
Yeh, S.-R.2
Das, T.K.3
Chan, C.-K.4
Gottfried, D.S.5
Rousseau, D.L.6
-
26
-
-
0031969090
-
A continuous-flow capillary mixer to monitor reactions on the microsecond time scale
-
Shastry, M. C. R., Luck, S. D. & Roder, H. (1998). A continuous-flow capillary mixer to monitor reactions on the microsecond time scale. Biophys. J. 74, 2714-2721.
-
(1998)
Biophys. J.
, vol.74
, pp. 2714-2721
-
-
Shastry, M.C.R.1
Luck, S.D.2
Roder, H.3
-
27
-
-
0033621117
-
Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering
-
Pollack, L., Tate, M. W., Darnton, N. C. et al. (1999). Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering. Proc. Natl Acad. Sci. USA 96, 10115-10117.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 10115-10117
-
-
Pollack, L.1
Tate, M.W.2
Darnton, N.C.3
-
28
-
-
0242503695
-
The velocity with which carbon monoxide displaces oxygen from combination with heamoglobin
-
Hartridge, H. & Roughton, F. J. W. (1923). The velocity with which carbon monoxide displaces oxygen from combination with heamoglobin. I. Proc. R. Soc. (Lond.) B Biol. Sci. 94, 336-367.
-
(1923)
I. Proc. R. Soc. (Lond.) B Biol. Sci.
, vol.94
, pp. 336-367
-
-
Hartridge, H.1
Roughton, F.J.W.2
-
29
-
-
0000750623
-
Biochem. J.
-
Gibson, Q. H. & Milnes, L. (1964). Biochem. J. 91, 161.
-
(1964)
, vol.91
, pp. 161
-
-
Gibson, Q.H.1
Milnes, L.2
-
30
-
-
0004159907
-
Rapid Mixing and Sampling Techniques in Biochemistry
-
(Chance, B., Eisenhardt, R. H., Gibson, Q. H. & Lonberg-Holm, K. K., Eds), Academic Press, New York
-
Chance, B. (1964). Rapid Mixing and Sampling Techniques in Biochemistry. (Chance, B., Eisenhardt, R. H., Gibson, Q. H. & Lonberg-Holm, K. K., Eds), Academic Press, New York.
-
(1964)
-
-
Chance, B.1
-
31
-
-
0001641210
-
Mixing liquids in microseconds
-
Regenfuss, P., Clegg, R. M., Fulwyler, M. J., Barrantes, F. J. & Jovin, T. M. (1985). Mixing liquids in microseconds. Rev. Sci. Instrum. 56, 283-290.
-
(1985)
Rev. Sci. Instrum.
, vol.56
, pp. 283-290
-
-
Regenfuss, P.1
Clegg, R.M.2
Fulwyler, M.J.3
Barrantes, F.J.4
Jovin, T.M.5
-
32
-
-
0031047914
-
Submillisecond protein folding kinetics studied by ultrarapid mixing
-
Chan, C.-K., Hu, Y., Takahashi, S., Rousseau, D. L., Eaton, W. A. & Hofrichter, J. (1997). Submillisecond protein folding kinetics studied by ultrarapid mixing. Proc. Natl Acad. Sci. USA 94, 1779-1784.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 1779-1784
-
-
Chan, C.-K.1
Hu, Y.2
Takahashi, S.3
Rousseau, D.L.4
Eaton, W.A.5
Hofrichter, J.6
-
33
-
-
0031919973
-
Evidence for barrier-limited protein folding kinetics on the microsecond time scale
-
Shastry, M. C. R. & Roder, H. (1998). Evidence for barrier-limited protein folding kinetics on the microsecond time scale. Nature Struct. Biol. 5, 385-392.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 385-392
-
-
Shastry, M.C.R.1
Roder, H.2
-
34
-
-
0542421561
-
Kinetic and structural analysis of submillisecond folding events in cytochrome c
-
Shastry, M. C. R., Sauder, J. M. & Roder, H. (1998). Kinetic and structural analysis of submillisecond folding events in cytochrome c. Acc. Chem. Res. 31, 717-725.
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 717-725
-
-
Shastry, M.C.R.1
Sauder, J.M.2
Roder, H.3
-
35
-
-
0032867418
-
Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing
-
Park, S.-H., Shastry, M. C. R. & Roder, H. (1999). Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing. Nature Struct. Biol. 6, 943-947.
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 943-947
-
-
Park, S.-H.1
Shastry, M.C.R.2
Roder, H.3
-
36
-
-
0035170463
-
Ultra-rapid mxing experiments reveal that Im7 folds via an on-pathway intermediate
-
Capaldi, A. P., Shastry, R. M. C., Kleanthous, C., Roder, H. & Radford, S. E. (2001). Ultra-rapid mxing experiments reveal that Im7 folds via an on-pathway intermediate. Nature Struct. Biol. 8, 68-72.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 68-72
-
-
Capaldi, A.P.1
Shastry, R.M.C.2
Kleanthous, C.3
Roder, H.4
Radford, S.E.5
-
37
-
-
0035150938
-
Structural and kinetic characterization of early folding events in beta-lactoglobulin
-
Kuwata, K., Shastry, R., Cheng, H. et al. (2001). Structural and kinetic characterization of early folding events in beta-lactoglobulin. Nature Struct. Biol. 8, 151-155.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 151-155
-
-
Kuwata, K.1
Shastry, R.2
Cheng, H.3
-
38
-
-
0037162450
-
Early kinetic intermediate in the folding of acyl-CoA binding protein detected by fluorescence labeling and ultrarapid mixing
-
Teilum, K., Maki, K., Kragelund, B. B., Poulsen, F. M. & Roder, H. (2002). Early kinetic intermediate in the folding of acyl-CoA binding protein detected by fluorescence labeling and ultrarapid mixing. Proc. Natl Acad. Sci. USA 99, 9807-9812.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 9807-9812
-
-
Teilum, K.1
Maki, K.2
Kragelund, B.B.3
Poulsen, F.M.4
Roder, H.5
-
39
-
-
0037675765
-
Parallel pathways in cytochrome c(551) folding
-
Gianni, S., Travaglini-Allocatelli, C., Cutruzzola, F., Brunori, M., Shastry, M. C. & Roder, H. (2003). Parallel pathways in cytochrome c(551) folding. J. Mol. Biol. 330, 1145-1152.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 1145-1152
-
-
Gianni, S.1
Travaglini-Allocatelli, C.2
Cutruzzola, F.3
Brunori, M.4
Shastry, M.C.5
Roder, H.6
-
40
-
-
0141457507
-
The kinetic pathway of folding of barnase
-
Khan, F., Chuang, J. I., Gianni, S. & Fersht, A. R. (2003). The kinetic pathway of folding of barnase. J. Mol. Biol. 333, 169-186.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 169-186
-
-
Khan, F.1
Chuang, J.I.2
Gianni, S.3
Fersht, A.R.4
-
41
-
-
0028916224
-
Rapid quench kinetic analysis of polymerases, adenosinetriphosphatases, and enzyme intermediates
-
Johnson, K. A. (1995). Rapid quench kinetic analysis of polymerases, adenosinetriphosphatases, and enzyme intermediates. Meth. Enzymol. 249, 38-61.
-
(1995)
Meth. Enzymol.
, vol.249
, pp. 38-61
-
-
Johnson, K.A.1
-
42
-
-
0000035628
-
Hydrodynamic focusing on a silicon chip: Mixing nanoliters in microseconds
-
Knight, J. B., Vishwanath, A., Brody, J. P. & Austin, R. H. (1998). Hydrodynamic focusing on a silicon chip: Mixing nanoliters in microseconds. Phys. Rev. Lett. 80, 3863-3866.
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 3863-3866
-
-
Knight, J.B.1
Vishwanath, A.2
Brody, J.P.3
Austin, R.H.4
-
43
-
-
0036841867
-
Laminar-flow fluid mixer for fast fluorescence kinetics studies
-
Pabit, S. A. & Hagen, S. J. (2002). Laminar-flow fluid mixer for fast fluorescence kinetics studies. Biophys. J. 83, 2872-2878.
-
(2002)
Biophys. J.
, vol.83
, pp. 2872-2878
-
-
Pabit, S.A.1
Hagen, S.J.2
-
44
-
-
0023669402
-
Rapid formation of secondary structure framework in protein folding studied by stopped-flow circular dichroism
-
Kuwajima, K., Yamaya, H., Miwa, S., Sugai, S. & Nagamura, T. (1987). Rapid formation of secondary structure framework in protein folding studied by stopped-flow circular dichroism. FEBS Lett. 221, 115-118.
-
(1987)
FEBS Lett.
, vol.221
, pp. 115-118
-
-
Kuwajima, K.1
Yamaya, H.2
Miwa, S.3
Sugai, S.4
Nagamura, T.5
-
45
-
-
0026781019
-
Early steps in cytochrome c folding probed by time-resolved circular dichroism and fluorescence spectroscopy
-
Elöve, G. A., Chaffotte, A. F., Roder, H. & Goldberg, M. E. (1992). Early steps in cytochrome c folding probed by time-resolved circular dichroism and fluorescence spectroscopy. Biochemistry 31, 6876-6883.
-
(1992)
Biochemistry
, vol.31
, pp. 6876-6883
-
-
Elöve, G.A.1
Chaffotte, A.F.2
Roder, H.3
Goldberg, M.E.4
-
46
-
-
0027749370
-
Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin
-
Jennings, P. A. & Wright, P. E. (1993). Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin. Science 262, 892-895.
-
(1993)
Science
, vol.262
, pp. 892-895
-
-
Jennings, P.A.1
Wright, P.E.2
-
47
-
-
0028947956
-
Early intermediates in the folding of dihydrofolate reductase from Escherichia coli detected by hydrogen exchange and NMR
-
Jones, B. E. & Matthews, C. R. (1995). Early intermediates in the folding of dihydrofolate reductase from Escherichia coli detected by hydrogen exchange and NMR. Protein Sci. 4, 167-177.
-
(1995)
Protein Sci.
, vol.4
, pp. 167-177
-
-
Jones, B.E.1
Matthews, C.R.2
-
48
-
-
0030057477
-
Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues
-
Khorasanizadeh, S., Peters, I. D. & Roder, H. (1996). Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues. Nature Struct. Biol. 3, 193-205.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 193-205
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Roder, H.3
-
49
-
-
0036135965
-
Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange
-
Walkenhorst, W. F., Edwards, J. A., Markley, J. L. & Roder, H. (2002). Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange. Protein Sci 11, 82-91.
-
(2002)
Protein Sci
, vol.11
, pp. 82-91
-
-
Walkenhorst, W.F.1
Edwards, J.A.2
Markley, J.L.3
Roder, H.4
-
50
-
-
0029967474
-
Side chain packing of the N-and Cterminal helices plays a critical role in the kinetics of cytochrome c folding
-
Coló n, W., Elöve, G. A., Wakem, L. P., Sherman, F. & Roder, H. (1996). Side chain packing of the N-and Cterminal helices plays a critical role in the kinetics of cytochrome c folding. Biochemistry 35, 5538-5549.
-
(1996)
Biochemistry
, vol.35
, pp. 5538-5549
-
-
Colón, W.1
Elöve, G.A.2
Wakem, L.P.3
Sherman, F.4
Roder, H.5
-
51
-
-
0018450898
-
Measurement of the dead time of a fluorescence stopped-flow instrument
-
Peterman, B. F. (1979). Measurement of the dead time of a fluorescence stopped-flow instrument. Anal. Biochem. 93, 442-444.
-
(1979)
Anal. Biochem.
, vol.93
, pp. 442-444
-
-
Peterman, B.F.1
-
52
-
-
0014278035
-
High resolution mixer for the study of the kinetics of rapid reactions in solution
-
Berger, R. L. & Chapman, H. F. (1968). High resolution mixer for the study of the kinetics of rapid reactions in solution. Rev. Sci. Instrum. 39, 493-498.
-
(1968)
Rev. Sci. Instrum.
, vol.39
, pp. 493-498
-
-
Berger, R.L.1
Chapman, H.F.2
-
53
-
-
0037426874
-
Measuring intense rotation and dissipation in turbulent flows
-
Zeff, B. W., Lanterman, D. D., McAllister, R., Roy, R., Kostelich, E. J. & Lathrop, D. P. (2003). Measuring intense rotation and dissipation in turbulent flows. Nature 421, 146-149.
-
(2003)
Nature
, vol.421
, pp. 146-149
-
-
Zeff, B.W.1
Lanterman, D.D.2
McAllister, R.3
Roy, R.4
Kostelich, E.J.5
Lathrop, D.P.6
-
54
-
-
0032516433
-
Toward understanding tryptophan fluorescence in proteins
-
Chen, Y. & Barkley, M. D. (1998). Toward understanding tryptophan fluorescence in proteins. Biochemistry 37, 9976-9982.
-
(1998)
Biochemistry
, vol.37
, pp. 9976-9982
-
-
Chen, Y.1
Barkley, M.D.2
-
55
-
-
0001598267
-
Quenching interactions and nonexponential decay: Tryptophan 138 of bacteriophage T4 lysozyme
-
Van Gilst, M., Tang, C., Roth, A. & Hudson, B. (1994). Quenching interactions and nonexponential decay: Tryptophan 138 of bacteriophage T4 lysozyme. Fluorescence 4, 203-207.
-
(1994)
Fluorescence
, vol.4
, pp. 203-207
-
-
Van Gilst, M.1
Tang, C.2
Roth, A.3
Hudson, B.4
-
56
-
-
0031784567
-
Probing the folding pathway of a beta-clam protein with single-tryptophan constructs
-
Clark, P. L., Weston, B. F. & Gierasch, L. M. (1998). Probing the folding pathway of a beta-clam protein with single-tryptophan constructs. Fold. Des. 3, 401-412.
-
(1998)
Fold. Des.
, vol.3
, pp. 401-412
-
-
Clark, P.L.1
Weston, B.F.2
Gierasch, L.M.3
-
57
-
-
0032568498
-
Single-tryptophan mutants of monomeric tryptophan repressor: optical spectroscopy reveals nonnative structure in a model for an early folding intermediate
-
Shao, X. & Matthews, C. R. (1998). Single-tryptophan mutants of monomeric tryptophan repressor: optical spectroscopy reveals nonnative structure in a model for an early folding intermediate. Biochemistry 37, 7850-7858.
-
(1998)
Biochemistry
, vol.37
, pp. 7850-7858
-
-
Shao, X.1
Matthews, C.R.2
-
58
-
-
0027305989
-
Folding and stability of a tryptophancontaining mutant of ubiquitin
-
Khorasanizadeh, S., Peters, I. D., Butt, T. R. & Roder, H. (1993). Folding and stability of a tryptophancontaining mutant of ubiquitin. Biochemistry 32, 7054-7063.
-
(1993)
Biochemistry
, vol.32
, pp. 7054-7063
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Butt, T.R.3
Roder, H.4
-
59
-
-
0030971246
-
Fluorescence methods for studying kinetics of protein-folding reactions
-
Eftink, M. R. & Shastry, M. C. R. (1997). Fluorescence methods for studying kinetics of protein-folding reactions. Meth. Enzymol. 278, 258-286.
-
(1997)
Meth. Enzymol.
, vol.278
, pp. 258-286
-
-
Eftink, M.R.1
Shastry, M.C.R.2
-
60
-
-
1842609473
-
Early events during folding of wild-type staphylococcal nuclease and a single-tryptophan variant studied by ultrarapid mixing
-
Maki, K., Cheng, H., Dolgikh, D. A., Shastry, M. C. & Roder, H. (2004). Early events during folding of wild-type staphylococcal nuclease and a single-tryptophan variant studied by ultrarapid mixing. J. Mol. Biol. 338, 383-400.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 383-400
-
-
Maki, K.1
Cheng, H.2
Dolgikh, D.A.3
Shastry, M.C.4
Roder, H.5
-
61
-
-
0014354873
-
Fluorescence spectroscopy of proteins
-
Stryer, L. (1968). Fluorescence spectroscopy of proteins. Science 162, 526-533.
-
(1968)
Science
, vol.162
, pp. 526-533
-
-
Stryer, L.1
-
62
-
-
0023657937
-
Sequential mechanism of refolding of carbonic anhydrase B
-
Semisotnov, G. V., Rodionova, N. A., Kutyshenko, V. P., Ebert, B., Blanck, J. & Ptitsyn, O. B. (1987). Sequential mechanism of refolding of carbonic anhydrase B. FEBS Lett. 224, 9.
-
(1987)
FEBS Lett.
, vol.224
, pp. 9
-
-
Semisotnov, G.V.1
Rodionova, N.A.2
Kutyshenko, V.P.3
Ebert, B.4
Blanck, J.5
Ptitsyn, O.B.6
-
63
-
-
0029115374
-
Kinetics of interaction of partially folded proteins with a hydrophobic dye: evidence that molten globule character is maximal in early folding intermediates
-
Engelhard, M. & Evans, P. A. (1995). Kinetics of interaction of partially folded proteins with a hydrophobic dye: evidence that molten globule character is maximal in early folding intermediates. Protein Sci. 4, 1553-1562.
-
(1995)
Protein Sci.
, vol.4
, pp. 1553-1562
-
-
Engelhard, M.1
Evans, P.A.2
-
64
-
-
0016380496
-
The Trp-59 fluorescence of ferricytochrome c as a sensitive measure of the over-all protein conformation
-
Tsong, T. Y. (1974). The Trp-59 fluorescence of ferricytochrome c as a sensitive measure of the over-all protein conformation. J. Biol. Chem. 249, 1988-1990.
-
(1974)
J. Biol. Chem.
, vol.249
, pp. 1988-1990
-
-
Tsong, T.Y.1
-
65
-
-
0030473296
-
Kinetic intermediates in the formation of the cytochrome c molten globule
-
Coló n, W. & Roder, H. (1996). Kinetic intermediates in the formation of the cytochrome c molten globule. Nature Struct. Biol. 3, 1019-1025.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 1019-1025
-
-
Colón, W.1
Roder, H.2
-
66
-
-
0017845014
-
Test reactions for a stopped-flow apparatus. Reduction of 2,6-dichlorophenolindophenol and potassium ferricyanide by l-ascorbic acid
-
Tonomura, B., Nakatani, H., Ohnishi, M., Yamaguchi-Ito, J. & Hiromi, K. (1978). Test reactions for a stopped-flow apparatus. Reduction of 2,6-dichlorophenolindophenol and potassium ferricyanide by l-ascorbic acid. Anal. Biochem. 84, 370-383.
-
(1978)
Anal. Biochem.
, vol.84
, pp. 370-383
-
-
Tonomura, B.1
Nakatani, H.2
Ohnishi, M.3
Yamaguchi-Ito, J.4
Hiromi, K.5
-
67
-
-
0034121798
-
Stepwise formation of alpha-helices during cytochrome c folding
-
Akiyama, S., Takahashi, S., Ishimori, K. & Morishima, I. (2000). Stepwise formation of alpha-helices during cytochrome c folding. Nature Struct. Biol. 7, 514-520.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 514-520
-
-
Akiyama, S.1
Takahashi, S.2
Ishimori, K.3
Morishima, I.4
-
68
-
-
0842299585
-
Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of a-helical content and compactness
-
Uzawa, T., Akiyama, S., Kimura, T. et al. (2004). Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of a-helical content and compactness. Proc. Natl Acad. Sci. USA 101, 1171-1176.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 1171-1176
-
-
Uzawa, T.1
Akiyama, S.2
Kimura, T.3
-
69
-
-
0034063443
-
Variable velocity liquid flow EPR applied to submillisecond protein folding
-
Grigoryants, V. M., Veselov, A. V. & Scholes, C. P. (2000). Variable velocity liquid flow EPR applied to submillisecond protein folding. Biophys. J. 78, 2702-2708.
-
(2000)
Biophys. J.
, vol.78
, pp. 2702-2708
-
-
Grigoryants, V.M.1
Veselov, A.V.2
Scholes, C.P.3
-
70
-
-
0035951095
-
EPR-detected folding kinetics of externally located cysteine-directed spin-labeled mutants of iso-1-cytochrome c
-
DeWeerd, K., Grigoryants, V., Sun, Y., Fetrow, J. S. & Scholes, C. P. (2001). EPR-detected folding kinetics of externally located cysteine-directed spin-labeled mutants of iso-1-cytochrome c. Biochemistry 40, 15846-15855.
-
(2001)
Biochemistry
, vol.40
, pp. 15846-15855
-
-
DeWeerd, K.1
Grigoryants, V.2
Sun, Y.3
Fetrow, J.S.4
Scholes, C.P.5
-
71
-
-
0035926229
-
Time resolved collapse of a folding protein observed with small angle x-ray scattering
-
Pollack, L., Tate, M. W., Finnefrock, A. C. et al. (2001). Time resolved collapse of a folding protein observed with small angle x-ray scattering. Phys. Rev. Lett. 86, 4962-4965.
-
(2001)
Phys. Rev. Lett.
, vol.86
, pp. 4962-4965
-
-
Pollack, L.1
Tate, M.W.2
Finnefrock, A.C.3
-
72
-
-
0037022327
-
Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering
-
Akiyama, S., Takahashi, S., Kimura, T. et al. (2002). Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering. Proc. Natl Acad. Sci. USA 99, 1329-1334.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 1329-1334
-
-
Akiyama, S.1
Takahashi, S.2
Kimura, T.3
-
73
-
-
0028352044
-
Kinetic mechanism of cytochrome c folding: involvement of the heme and its ligands
-
Elöve, G. A., Bhuyan, A. K. & Roder, H. (1994). Kinetic mechanism of cytochrome c folding: involvement of the heme and its ligands. Biochemistry 33, 6925-6935.
-
(1994)
Biochemistry
, vol.33
, pp. 6925-6935
-
-
Elöve, G.A.1
Bhuyan, A.K.2
Roder, H.3
-
74
-
-
0028402689
-
The barriers in protein folding
-
Sosnick, T. R., Mayne, L., Hiller, R. & Englander, S. W. (1994). The barriers in protein folding. Nature Struct. Biol. 1, 149-156.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 149-156
-
-
Sosnick, T.R.1
Mayne, L.2
Hiller, R.3
Englander, S.W.4
-
75
-
-
0030816577
-
Identification of the predominant non-native histidine ligand in unfolded cytochrome c
-
Coló n, W., Wakem, L. P., Sherman, F. & Roder, H. (1997). Identification of the predominant non-native histidine ligand in unfolded cytochrome c. Biochemistry 36, 12535-12541.
-
(1997)
Biochemistry
, vol.36
, pp. 12535-12541
-
-
Colón, W.1
Wakem, L.P.2
Sherman, F.3
Roder, H.4
-
76
-
-
0000509513
-
Stopped-flow circular dichroism
-
In Circular Dichroism and the Conformational Analysis of Biomolecules (Fasman, G. D., Ed.). Plenum Press, New York
-
Kuwajima, K. (1996). Stopped-flow circular dichroism. In Circular Dichroism and the Conformational Analysis of Biomolecules (Fasman, G. D., Ed.). Plenum Press, New York.
-
(1996)
-
-
Kuwajima, K.1
-
77
-
-
0034737327
-
Two-state expansion and collapse of a polypeptide
-
Hagen, S. J. & Eaton, W. A. (2000). Two-state expansion and collapse of a polypeptide. J. Mol. Biol. 297, 781-789.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 781-789
-
-
Hagen, S.J.1
Eaton, W.A.2
-
78
-
-
0030322627
-
Structure of very early protein folding intermediates: new insights through a variant of hydrogen exchange labelling
-
Gladwin, S. T. & Evans, P. A. (1996). Structure of very early protein folding intermediates: new insights through a variant of hydrogen exchange labelling. Fold. Des. 1, 407-417.
-
(1996)
Fold. Des.
, vol.1
, pp. 407-417
-
-
Gladwin, S.T.1
Evans, P.A.2
-
79
-
-
0031866483
-
Amide protection in an early folding intermediate of cytochrome c
-
Sauder, J. M. & Roder, H. (1998). Amide protection in an early folding intermediate of cytochrome c. Fold. Des. 3, 293-301.
-
(1998)
Fold. Des.
, vol.3
, pp. 293-301
-
-
Sauder, J.M.1
Roder, H.2
-
80
-
-
0027250665
-
Primary structure effects on peptide group exchange
-
Bai, Y., Milne, J. S. & Englander, S. W. (1993). Primary structure effects on peptide group exchange. Proteins 17, 75-86.
-
(1993)
Proteins
, vol.17
, pp. 75-86
-
-
Bai, Y.1
Milne, J.S.2
Englander, S.W.3
-
81
-
-
0031205431
-
Protein folding pathways and intermediates
-
Clarke, A. R. & Waltho, J. P. (1997). Protein folding pathways and intermediates. Curr. Opin. Biotechnol. 8, 400-410.
-
(1997)
Curr. Opin. Biotechnol.
, vol.8
, pp. 400-410
-
-
Clarke, A.R.1
Waltho, J.P.2
-
82
-
-
0026782853
-
Kinetic analysis of folding and unfolding the 56 amino acid IgGbinding domain of streptococcal protein G
-
Alexander, P., Orban, J. & Bryan, P. (1992). Kinetic analysis of folding and unfolding the 56 amino acid IgGbinding domain of streptococcal protein G. Biochemistry 31, 7243-7248.
-
(1992)
Biochemistry
, vol.31
, pp. 7243-7248
-
-
Alexander, P.1
Orban, J.2
Bryan, P.3
-
83
-
-
0030664958
-
An early intermediate in the folding reaction of the B1 domain of protein G contains a native-like core
-
Park, S.-H., O'Neil, K. T. & Roder, H. (1997). An early intermediate in the folding reaction of the B1 domain of protein G contains a native-like core. Biochemistry 36, 14277-14283.
-
(1997)
Biochemistry
, vol.36
, pp. 14277-14283
-
-
Park, S.-H.1
O'Neil, K.T.2
Roder, H.3
-
84
-
-
0004200845
-
The foundations of chemical kinetics
-
In Advanced Topics in Chemistry, 1st edn, p. 725. McGraw-Hill, New York
-
Benson, S. W. (1960). The foundations of chemical kinetics. In Advanced Topics in Chemistry, 1st edn, p. 725. McGraw-Hill, New York.
-
(1960)
-
-
Benson, S.W.1
-
85
-
-
0039492013
-
Matrix formulation of chemical reaction rates
-
Pogliani, L. & Terenzi, M. (1992). Matrix formulation of chemical reaction rates. J. Chem. Educ. 69, 278-280.
-
(1992)
J. Chem. Educ.
, vol.69
, pp. 278-280
-
-
Pogliani, L.1
Terenzi, M.2
-
86
-
-
0037225280
-
Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding
-
Sanchez, I. E. & Kiefhaber, T. (2003). Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding. J. Mol. Biol. 325, 367-376.
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 367-376
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
87
-
-
0013994339
-
Hydrogen exchange in proteins
-
Hvidt, A. & Nielsen, S. O. (1966). Hydrogen exchange in proteins. Adv. Protein Sci. 21, 287-386.
-
(1966)
Adv. Protein Sci.
, vol.21
, pp. 287-386
-
-
Hvidt, A.1
Nielsen, S.O.2
-
88
-
-
0014364651
-
Protein denaturation
-
Tanford, C. (1968). Protein denaturation. Adv. Protein Chem. 23, 121-282.
-
(1968)
Adv. Protein Chem.
, vol.23
, pp. 121-282
-
-
Tanford, C.1
-
89
-
-
0036440985
-
Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding
-
Krantz, B. A., Mayne, L., Rumbley, J., Englander, S. W. & Sosnick, T. R. (2002). Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding. J. Mol. Biol. 324, 359-371.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 359-371
-
-
Krantz, B.A.1
Mayne, L.2
Rumbley, J.3
Englander, S.W.4
Sosnick, T.R.5
-
90
-
-
0034718524
-
Distinguishing between twostate and three-state models for ubiquitin folding
-
Krantz, B. A. & Sosnick, T. R. (2000). Distinguishing between twostate and three-state models for ubiquitin folding. Biochemistry 39, 11696-11701.
-
(2000)
Biochemistry
, vol.39
, pp. 11696-11701
-
-
Krantz, B.A.1
Sosnick, T.R.2
-
91
-
-
0028965952
-
Localized solution structure refinement of an F45W variant of ubiquitin using stochastic boundary molecular dynamics and NMR distance restraints
-
Laub, P. B., Khorasanizadeh, S. & Roder, H. (1995). Localized solution structure refinement of an F45W variant of ubiquitin using stochastic boundary molecular dynamics and NMR distance restraints. Protein Sci. 4, 973-982.
-
(1995)
Protein Sci.
, vol.4
, pp. 973-982
-
-
Laub, P.B.1
Khorasanizadeh, S.2
Roder, H.3
-
92
-
-
2942617191
-
Is an intermediate state populated on the folding pathway of ubiquitin?
-
Went, H. M., Benitez-Cardoza, C. G. & Jackson, S. E. (2004). Is an intermediate state populated on the folding pathway of ubiquitin? FEBS Lett. 567, 333-338.
-
(2004)
FEBS Lett.
, vol.567
, pp. 333-338
-
-
Went, H.M.1
Benitez-Cardoza, C.G.2
Jackson, S.E.3
-
93
-
-
0030584652
-
Protein folding triggered by electron transfer
-
Pascher, T., Chesick, J. P., Winkler, J. R. & Gray, H. B. (1996). Protein folding triggered by electron transfer. Science 271, 1558-1560.
-
(1996)
Science
, vol.271
, pp. 1558-1560
-
-
Pascher, T.1
Chesick, J.P.2
Winkler, J.R.3
Gray, H.B.4
-
94
-
-
0021111761
-
Manipulation of the observed kinetic phases in the refolding of denatured ferricytochromes c
-
Brems, D. N. & Stellwagen, E. (1983). Manipulation of the observed kinetic phases in the refolding of denatured ferricytochromes c. J. Biol. Chem. 258, 3655-3660.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 3655-3660
-
-
Brems, D.N.1
Stellwagen, E.2
-
95
-
-
0025832142
-
Effective concentrations of amino acid side chains in an unfolded protein
-
Muthukrishnan, K. & Nall, B. T. (1991). Effective concentrations of amino acid side chains in an unfolded protein. Biochemistry 30, 4706-4710.
-
(1991)
Biochemistry
, vol.30
, pp. 4706-4710
-
-
Muthukrishnan, K.1
Nall, B.T.2
-
96
-
-
0032488914
-
Cytochrome c folding traps are not due solely to histidineheme ligation: Direct demonstration of a role for N-terminal amino groupheme ligation
-
Hammack, B., Godbole, S. & Bowler, B. E. (1998). Cytochrome c folding traps are not due solely to histidineheme ligation: Direct demonstration of a role for N-terminal amino groupheme ligation. J. Mol. Biol. 275, 719-724.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 719-724
-
-
Hammack, B.1
Godbole, S.2
Bowler, B.E.3
-
97
-
-
0031027088
-
Ligand exchange during cytochrome c folding
-
Yeh, S.-R., Takahashi, S., Fan, B. & Rousseau, D. L. (1997). Ligand exchange during cytochrome c folding. Nature Struct. Biol. 4, 51-56.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 51-56
-
-
Yeh, S.-R.1
Takahashi, S.2
Fan, B.3
Rousseau, D.L.4
-
98
-
-
0029964867
-
Diffusionlimited contact formation in unfolded cytochrome c: Estimating the maximum rate of protein folding
-
Hagen, S. J., Hofrichter, J., Szabo, A. & Eaton, W. A. (1996). Diffusionlimited contact formation in unfolded cytochrome c: Estimating the maximum rate of protein folding. Proc. Natl Acad. Sci. USA 93, 11615-11617.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 11615-11617
-
-
Hagen, S.J.1
Hofrichter, J.2
Szabo, A.3
Eaton, W.A.4
-
99
-
-
0037667601
-
Fast chain contraction during protein folding: "foldability" and collapse dynamics
-
Qiu, L., Zachariah, C. & Hagen, S. J. (2003). Fast chain contraction during protein folding: "foldability" and collapse dynamics. Phys Rev Lett 90, 168103.
-
(2003)
Phys Rev Lett
, vol.90
, pp. 168103
-
-
Qiu, L.1
Zachariah, C.2
Hagen, S.J.3
-
100
-
-
0028929556
-
Principles of protein folding-a perspective from simple exact models
-
Dill, K. A., Bromberg, S., Yue, K. et al. (1995). Principles of protein folding-a perspective from simple exact models. Protein Sci. 4, 561-602.
-
(1995)
Protein Sci.
, vol.4
, pp. 561-602
-
-
Dill, K.A.1
Bromberg, S.2
Yue, K.3
-
101
-
-
0032568599
-
Folding funnels and frustration in off-lattice minimalist protein landscapes
-
Nymeyer, H., Garcia, A. E. & Onuchic, J. N. (1998). Folding funnels and frustration in off-lattice minimalist protein landscapes. Proc. Natl Acad. Sci. USA 95, 5921-5928.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5921-5928
-
-
Nymeyer, H.1
Garcia, A.E.2
Onuchic, J.N.3
-
102
-
-
0032989351
-
Observation of strange kinetics in protein folding
-
Sabelko, J., Ervin, J. & Gruebele, M. (1999). Observation of strange kinetics in protein folding. Proc. Natl Acad. Sci. USA 96, 6031-6036.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 6031-6036
-
-
Sabelko, J.1
Ervin, J.2
Gruebele, M.3
-
103
-
-
0037235662
-
Exponential decay kinetics in "downhill" protein folding
-
Hagen, S. J. (2003). Exponential decay kinetics in "downhill" protein folding. Proteins 50, 1-4.
-
(2003)
Proteins
, vol.50
, pp. 1-4
-
-
Hagen, S.J.1
-
104
-
-
0036401862
-
The expanded denatured state: an ensemble of conformations trapped in a locally encoded topological space
-
Shortle, D. (2002). The expanded denatured state: an ensemble of conformations trapped in a locally encoded topological space. Adv. Protein Chem. 62, 1-23.
-
(2002)
Adv. Protein Chem.
, vol.62
, pp. 1-23
-
-
Shortle, D.1
-
105
-
-
0000697562
-
Proteins as random coils. I. Intrinsic viscosities and sedimentation coefficients in concentrated guanidine hydrochloride
-
Tanford, C., Kawahara, K. & Lapanje, S. (1967). Proteins as random coils. I. Intrinsic viscosities and sedimentation coefficients in concentrated guanidine hydrochloride. J. Am. Chem. Soc. 89, 729-749.
-
(1967)
J. Am. Chem. Soc.
, vol.89
, pp. 729-749
-
-
Tanford, C.1
Kawahara, K.2
Lapanje, S.3
-
106
-
-
0029940033
-
Molecular collapse: the rate-limiting step in twostate cytochrome c folding
-
Sosnick, T. R., Mayne, L. & Englander, S. W. (1996). Molecular collapse: the rate-limiting step in twostate cytochrome c folding. Proteins 24, 413-426.
-
(1996)
Proteins
, vol.24
, pp. 413-426
-
-
Sosnick, T.R.1
Mayne, L.2
Englander, S.W.3
-
107
-
-
0030844583
-
Ultrafast signals in protein folding and the polypeptide contracted state
-
Sosnick, T. R., Shtilerman, M. D., Mayne, L. & Englander, S. W. (1997). Ultrafast signals in protein folding and the polypeptide contracted state. Proc. Natl Acad. Sci. USA 94, 8545-8550.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 8545-8550
-
-
Sosnick, T.R.1
Shtilerman, M.D.2
Mayne, L.3
Englander, S.W.4
-
108
-
-
0031697733
-
The burst phase in ribonuclease A folding and solvent dependence of the unfolded state
-
Qi, P. X., Sosnick, T. R. & Englander, S. W. (1998). The burst phase in ribonuclease A folding and solvent dependence of the unfolded state. Nature Struct. Biol. 5, 882-884.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 882-884
-
-
Qi, P.X.1
Sosnick, T.R.2
Englander, S.W.3
-
109
-
-
0032514727
-
Folding kinetics of villin 14T, a protein domain with a central beta-sheet and two hydrophobic cores
-
Choe, S. E., Matsudaira, P. T., Osterhout, J., Wagner, G. & Shakhnovich, E. I. (1998). Folding kinetics of villin 14T, a protein domain with a central beta-sheet and two hydrophobic cores. Biochemistry 37, 14508-14518.
-
(1998)
Biochemistry
, vol.37
, pp. 14508-14518
-
-
Choe, S.E.1
Matsudaira, P.T.2
Osterhout, J.3
Wagner, G.4
Shakhnovich, E.I.5
-
110
-
-
0033548553
-
Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9
-
Ferguson, N., Capaldi, A. P., James, R., Kleanthous, C. & Radford, S. E. (1999). Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9. J. Mol. Biol. 286, 1597-1608.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1597-1608
-
-
Ferguson, N.1
Capaldi, A.P.2
James, R.3
Kleanthous, C.4
Radford, S.E.5
-
111
-
-
0035965128
-
Acidic conditions stabilise intermediates populated during the folding of Im7 and Im9
-
Gorski, S. A., Capaldi, A. P., Kleanthous, C. & Radford, S. E. (2001). Acidic conditions stabilise intermediates populated during the folding of Im7 and Im9. J. Mol. Biol. 312, 849-863.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 849-863
-
-
Gorski, S.A.1
Capaldi, A.P.2
Kleanthous, C.3
Radford, S.E.4
-
112
-
-
0042510944
-
Contact order revisited: influence of protein size on the folding rate
-
Ivankov, D. N., Garbuzynskiy, S. O., Alm, E., Plaxco, K. W., Baker, D. & Finkelstein, A. V. (2003). Contact order revisited: influence of protein size on the folding rate. Protein Sci 12, 2057-2062.
-
(2003)
Protein Sci
, vol.12
, pp. 2057-2062
-
-
Ivankov, D.N.1
Garbuzynskiy, S.O.2
Alm, E.3
Plaxco, K.W.4
Baker, D.5
Finkelstein, A.V.6
-
113
-
-
0029151158
-
Submillisecond folding of monomeric l repressor
-
Huang, G. S. & Oas, T. G. (1995). Submillisecond folding of monomeric l repressor. Proc. Natl Acad. Sci. USA 92, 6878-6882.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 6878-6882
-
-
Huang, G.S.1
Oas, T.G.2
-
114
-
-
0030601788
-
Microsecond protein folding through a compact transition state
-
Burton, R. E., Huang, G. S., Daugherty, M. A., Fullbright, P. W. & Oas, T. G. (1996). Microsecond protein folding through a compact transition state. J. Mol. Biol. 263, 311-322.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 311-322
-
-
Burton, R.E.1
Huang, G.S.2
Daugherty, M.A.3
Fullbright, P.W.4
Oas, T.G.5
-
115
-
-
0033535839
-
Cytochrome b562 folding triggered by electron transfer: approaching the speed limit for formation of a fourhelix-bundle protein
-
Wittung-Stafshede, P., Lee, J. C., Winkler, J. R. & Gray, H. B. (1999). Cytochrome b562 folding triggered by electron transfer: approaching the speed limit for formation of a fourhelix-bundle protein. Proc. Natl Acad. Sci. USA 96, 6587-6590.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 6587-6590
-
-
Wittung-Stafshede, P.1
Lee, J.C.2
Winkler, J.R.3
Gray, H.B.4
-
116
-
-
0033537683
-
Microsecond folding of the cold shock protein measured by a pressure-jump technique
-
Jacob, M., Holtermann, G., Perl, D. et al. (1999). Microsecond folding of the cold shock protein measured by a pressure-jump technique. Biochemistry 38, 2882-2891.
-
(1999)
Biochemistry
, vol.38
, pp. 2882-2891
-
-
Jacob, M.1
Holtermann, G.2
Perl, D.3
-
117
-
-
0028402735
-
The energetic ups and downs of protein folding
-
Creighton, T. E. (1994). The energetic ups and downs of protein folding. Nature Struct. Biol. 1, 135-138.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 135-138
-
-
Creighton, T.E.1
-
118
-
-
0028856785
-
Optimization of rates of protein folding: The nucleation-condensation mechanism and its implications
-
Fersht, A. R. (1995). Optimization of rates of protein folding: The nucleation-condensation mechanism and its implications. Proc. Natl Acad. Sci. USA 92, 10869-10873.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 10869-10873
-
-
Fersht, A.R.1
-
119
-
-
0002775727
-
Early stages of protein folding
-
In Mechanisms of Protein Folding: Frontiers in Molecular Biology (Pain, R. H., Ed.), Oxford University Press, New York
-
Roder, H. & Elöve, G. A. (1994). Early stages of protein folding. In Mechanisms of Protein Folding: Frontiers in Molecular Biology (Pain, R. H., Ed.), pp. 26-55. Oxford University Press, New York.
-
(1994)
, pp. 26-55
-
-
Roder, H.1
Elöve, G.A.2
-
120
-
-
0030958760
-
Transient aggregates in protein folding are easily mistaken for folding intermediates
-
Silow, M. & Oliveberg, M. (1997). Transient aggregates in protein folding are easily mistaken for folding intermediates. Proc. Natl Acad. Sci. USA 94, 6084-6086.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6084-6086
-
-
Silow, M.1
Oliveberg, M.2
-
121
-
-
0039825244
-
Analysis of protein folding by protein engineering
-
In Mechanisms of Protein Folding: Frontiers in Molecular Biology (Pain, R. H., Ed.), Oxford University Press, Oxford
-
Matouschek, A., Serrano, L. & Fersht, A. R. (1994). Analysis of protein folding by protein engineering. In Mechanisms of Protein Folding: Frontiers in Molecular Biology (Pain, R. H., Ed.), pp. 137-159. Oxford University Press, Oxford.
-
(1994)
, pp. 137-159
-
-
Matouschek, A.1
Serrano, L.2
Fersht, A.R.3
-
122
-
-
0032884925
-
Confirmation of the hierarchical folding of RNase H: a protein engineering study
-
Raschke, T. M., Kho, J. & Marqusee, S. (1999). Confirmation of the hierarchical folding of RNase H: a protein engineering study. Nature Struct. Biol. 6, 825-831.
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 825-831
-
-
Raschke, T.M.1
Kho, J.2
Marqusee, S.3
-
123
-
-
0031010618
-
Kinetic evidence for folding and unfolding intermediates in Staphylococcal nuclease
-
Walkenhorst, W. F., Green, S. M. & Roder, H. (1997). Kinetic evidence for folding and unfolding intermediates in Staphylococcal nuclease. Biochemistry 63, 5795-5805.
-
(1997)
Biochemistry
, vol.63
, pp. 5795-5805
-
-
Walkenhorst, W.F.1
Green, S.M.2
Roder, H.3
-
124
-
-
0029025915
-
Kinetic traps in lysozyme folding
-
Kiefhaber, T. (1995). Kinetic traps in lysozyme folding. Proc. Natl Acad. Sci. USA 92, 9029-9033.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 9029-9033
-
-
Kiefhaber, T.1
-
125
-
-
0030772992
-
Evidence for an obligatory intermediate in the folding of interleukin-1b
-
Heidary, D. K., Gross, L. A., Roy, M. & Jennings, P. A. (1997). Evidence for an obligatory intermediate in the folding of interleukin-1b. Nature Struct. Biol. 4, 725-731.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 725-731
-
-
Heidary, D.K.1
Gross, L.A.2
Roy, M.3
Jennings, P.A.4
-
126
-
-
0031613420
-
Folding pathway of interleukin-1 beta
-
Jennings, P., Roy, M., Heidary, D. & Gross, L. (1998). Folding pathway of interleukin-1 beta. Nature Struct. Biol. 5, 11.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 11
-
-
Jennings, P.1
Roy, M.2
Heidary, D.3
Gross, L.4
-
127
-
-
0032901420
-
Quench-flow experiments combined with mass spectrometry show apomyoglobin folds through and obligatory intermediate
-
Tsui, V., Garcia, C., Cavagnero, S., Siuzdak, G., Dyson, H. J. & Wright, P. E. (1999). Quench-flow experiments combined with mass spectrometry show apomyoglobin folds through and obligatory intermediate. Protein Sci. 8, 45-49.
-
(1999)
Protein Sci.
, vol.8
, pp. 45-49
-
-
Tsui, V.1
Garcia, C.2
Cavagnero, S.3
Siuzdak, G.4
Dyson, H.J.5
Wright, P.E.6
-
128
-
-
0036183221
-
Im7 folding mechanism: misfolding on a path to the native state
-
Capaldi, A. P., Kleanthous, C. & Radford, S. E. (2002). Im7 folding mechanism: misfolding on a path to the native state. Nature Struct. Biol. 9, 209-216.
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 209-216
-
-
Capaldi, A.P.1
Kleanthous, C.2
Radford, S.E.3
-
129
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco, K. W., Simons, K. T. & Baker, D. (1998). Contact order, transition state placement and the refolding rates of single domain proteins. J. Mol. Biol. 277, 985-994.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
130
-
-
0035005366
-
Preorganized secondary structure as an important determinant of fast protein folding
-
Myers, J. K. & Oas, T. G. (2001). Preorganized secondary structure as an important determinant of fast protein folding. Nature Struct. Biol. 8, 552-558.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 552-558
-
-
Myers, J.K.1
Oas, T.G.2
-
131
-
-
0037032225
-
Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros
-
Qiu, L., Pabit, S. A., Roitberg, A. E. & Hagen, S. J. (2002). Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros. J. Am. Chem. Soc. 124, 12952-12953.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 12952-12953
-
-
Qiu, L.1
Pabit, S.A.2
Roitberg, A.E.3
Hagen, S.J.4
-
132
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
Mayor, U., Guydosh, N. R., Johnson, C. M. et al. (2003). The complete folding pathway of a protein from nanoseconds to microseconds. Nature 421, 863-867.
-
(2003)
Nature
, vol.421
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
-
133
-
-
0346734133
-
Ultrafast folding of alpha3D: a de novo designed threehelix bundle protein
-
Zhu, Y., Alonso, D. O., Maki, K. et al. (2003). Ultrafast folding of alpha3D: a de novo designed threehelix bundle protein. Proc. Natl Acad. Sci. USA 100, 15486-15491.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15486-15491
-
-
Zhu, Y.1
Alonso, D.O.2
Maki, K.3
-
134
-
-
0025685902
-
Time-resolved fluorescence studies of the protein folding process: new instrumentation, analysis and experimental approaches in timeresolved laser spectroscopy in biochemistry
-
Beechem, J. M., James, L. & Brand, L. (1990). Time-resolved fluorescence studies of the protein folding process: new instrumentation, analysis and experimental approaches in timeresolved laser spectroscopy in biochemistry. SPIE Proc. 1204, 686-698.
-
(1990)
SPIE Proc.
, vol.1204
, pp. 686-698
-
-
Beechem, J.M.1
James, L.2
Brand, L.3
-
135
-
-
0028925815
-
Local and global dynamics during the folding of Escherichia coli dihydrofolate reductase by time-resolved fluorescence spectroscopy
-
Jones, B. E., Beechem, J. M. & Matthews, C. R. (1995). Local and global dynamics during the folding of Escherichia coli dihydrofolate reductase by time-resolved fluorescence spectroscopy. Biochemistry 34, 1867-1877.
-
(1995)
Biochemistry
, vol.34
, pp. 1867-1877
-
-
Jones, B.E.1
Beechem, J.M.2
Matthews, C.R.3
-
136
-
-
0029123975
-
Following protein folding in real time using NMR spectroscopy
-
Balbach, J., Forge, V., van Nuland, N. A. J., Winder, S. L., Hore, P. J. & Dobson, C. M. (1995). Following protein folding in real time using NMR spectroscopy. Nature Struct. Biol. 2, 865-870.
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 865-870
-
-
Balbach, J.1
Forge, V.2
Van Nuland, N.A.J.3
Winder, S.L.4
Hore, P.J.5
Dobson, C.M.6
-
137
-
-
0242286689
-
The kinetics of side chain stabilization during protein folding
-
Frieden, C. (2003). The kinetics of side chain stabilization during protein folding. Biochemistry 42, 12439-12446.
-
(2003)
Biochemistry
, vol.42
, pp. 12439-12446
-
-
Frieden, C.1
-
138
-
-
0033532201
-
Characterization of transient intermediates in Lysozyme folding with time resolved small-angle X-ray scattering
-
Segel, D. J., Bachmann, A., Hofrichter, J., Hodgson, K. O., Doniach, S. & Kiefhaber, T. (1999). Characterization of transient intermediates in Lysozyme folding with time resolved small-angle X-ray scattering. J. Mol. Biol. 288, 489-499.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 489-499
-
-
Segel, D.J.1
Bachmann, A.2
Hofrichter, J.3
Hodgson, K.O.4
Doniach, S.5
Kiefhaber, T.6
-
139
-
-
0024726838
-
Determination of the dead time of a stopped-flow fluorometer
-
Brissette, P., Ballou, D. P. & Massey, V. (1989). Determination of the dead time of a stopped-flow fluorometer. Anal. Biochem. 181, 234-238.
-
(1989)
Anal. Biochem.
, vol.181
, pp. 234-238
-
-
Brissette, P.1
Ballou, D.P.2
Massey, V.3
-
140
-
-
0345562799
-
Kinetics of heme-protein intractions
-
In Hemes and Hemeproteins (Chance, B., Estabrook, R. W. & Yonetani, T., Eds), Academic Press, New York
-
Gibson, Q. H. & Antonini, E. (1966). Kinetics of heme-protein intractions. In Hemes and Hemeproteins (Chance, B., Estabrook, R. W. & Yonetani, T., Eds), pp. 67-78. Academic Press, New York.
-
(1966)
, pp. 67-78
-
-
Gibson, Q.H.1
Antonini, E.2
-
142
-
-
0001564815
-
Meth
-
Gutfreund, H. (1969). Meth. Enzymol. 16, 229-249.
-
(1969)
Enzymol.
, vol.16
, pp. 229-249
-
-
Gutfreund, H.1
-
143
-
-
0028902628
-
Microsecond generation of oxygenbound cytochrome c oxidase by rapid solution mixing
-
Takahashi, S., Ching, Y.-c., Wang, J. & Rousseau, D. L. (1995). Microsecond generation of oxygenbound cytochrome c oxidase by rapid solution mixing. J. Biol. Chem. 270, 8405-8407.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 8405-8407
-
-
Takahashi, S.1
Ching, Y.-C.2
Wang, J.3
Rousseau, D.L.4
-
144
-
-
84996308561
-
Time-resolved resonance raman spectroscopy using a fast mixing device
-
Paeng, K., Paeng, I. & Kincaid, J. (1994). Time-resolved resonance raman spectroscopy using a fast mixing device. Anal. Sci. 10, 157-159.
-
(1994)
Anal. Sci.
, vol.10
, pp. 157-159
-
-
Paeng, K.1
Paeng, I.2
Kincaid, J.3
-
145
-
-
0028354429
-
Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR
-
Gallagher, T., Alexander, P., Bryan, P. & Gilliland, G. L. (1994). Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR. Biochemistry 33, 4721-4729.
-
(1994)
Biochemistry
, vol.33
, pp. 4721-4729
-
-
Gallagher, T.1
Alexander, P.2
Bryan, P.3
Gilliland, G.L.4
-
146
-
-
0025007598
-
High-resolution three-dimensional structure of horse heart cytochrome c
-
Bushnell, G. W., Louie, G. V. & Brayer, G. D. (1990). High-resolution three-dimensional structure of horse heart cytochrome c. J. Mol. Biol. 214, 585-595.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 585-595
-
-
Bushnell, G.W.1
Louie, G.V.2
Brayer, G.D.3
|