-
1
-
-
0030347877
-
On-pathway versus off-pathway folding intermediates
-
Baldwin R. L. On-pathway versus off-pathway folding intermediates. Folding Design. 1:1996;R1-R8.
-
(1996)
Folding Design
, vol.1
-
-
Baldwin, R.L.1
-
2
-
-
0031005061
-
The energy landscape of a fast-folding protein mapped by Ala→Gly substitutions
-
Burton R. E., Huang G. S., Daugherty M. A., Calderone T. L., Oas T. G. The energy landscape of a fast-folding protein mapped by Ala→Gly substitutions. Nature Struct. Biol. 4:1997;305-310.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 305-310
-
-
Burton, R.E.1
Huang, G.S.2
Daugherty, M.A.3
Calderone, T.L.4
Oas, T.G.5
-
3
-
-
0032554626
-
Protein folding dynamics: Quantitative comparison between theory and experiment
-
Burton R. E., Myers J. K., Oas T. G. Protein folding dynamics: quantitative comparison between theory and experiment. Biochemistry. 37:1998;5337-5343.
-
(1998)
Biochemistry
, vol.37
, pp. 5337-5343
-
-
Burton, R.E.1
Myers, J.K.2
Oas, T.G.3
-
4
-
-
0029982778
-
The crystal structure of the immunity protein of colicin E7 suggests a possible colicin-interacting surface
-
Chak K. F., Safo M. K., Ku W. Y., Hsieh S. Y., Yuan H. S. The crystal structure of the immunity protein of colicin E7 suggests a possible colicin-interacting surface. Proc. Natl Acad. Sci. USA. 93:1996;6437-6442.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 6437-6442
-
-
Chak, K.F.1
Safo, M.K.2
Ku, W.Y.3
Hsieh, S.Y.4
Yuan, H.S.5
-
6
-
-
0031214818
-
Folding and stability of a fibronectin type III domain of human tenascin
-
Clarke J., Hamill S. J., Johnson C. M. Folding and stability of a fibronectin type III domain of human tenascin. J. Mol. Biol. 270:1997;771-778.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 771-778
-
-
Clarke, J.1
Hamill, S.J.2
Johnson, C.M.3
-
7
-
-
0028402735
-
The energetic ups and downs of protein folding
-
Creighton T. E. The energetic ups and downs of protein folding. Nature Struct. Biol. 1:1994;135-138.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 135-138
-
-
Creighton, T.E.1
-
8
-
-
0029981188
-
Structure of the transition-state for folding of a protein derived from experiment and simulation
-
Daggett V., Li A. J., Itzhaki L. S., Otzen D. E., Fersht A. R. Structure of the transition-state for folding of a protein derived from experiment and simulation. J. Mol. Biol. 257:1996;430-440.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 430-440
-
-
Daggett, V.1
Li, A.J.2
Itzhaki, L.S.3
Otzen, D.E.4
Fersht, A.R.5
-
9
-
-
0032127769
-
A structural comparison of the colicin immunity proteins Im7 and Im9 gives new insights into the molecular determinants of immunity protein specificity
-
Dennis C. A., Videler H., Pauptit R. A., Wallis R., James R., Moore G. R., Kleanthous C. A structural comparison of the colicin immunity proteins Im7 and Im9 gives new insights into the molecular determinants of immunity protein specificity. Biochem. J. 333:1998;183-191.
-
(1998)
Biochem. J.
, vol.333
, pp. 183-191
-
-
Dennis, C.A.1
Videler, H.2
Pauptit, R.A.3
Wallis, R.4
James, R.5
Moore, G.R.6
Kleanthous, C.7
-
10
-
-
0031915141
-
A metastable state in folding simulations of a protein model
-
Dinner A. R., Karplus M. A metastable state in folding simulations of a protein model. Nature Struct. Biol. 5:1998;236-241.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 236-241
-
-
Dinner, A.R.1
Karplus, M.2
-
11
-
-
0028053187
-
Understanding how proteins fold - The lysozyme story so far
-
Dobson C. M., Evans P. A., Radford S. E. Understanding how proteins fold - the lysozyme story so far. Trends Biochemi. Sci. 19:1994;31-37.
-
(1994)
Trends Biochemi. Sci.
, vol.19
, pp. 31-37
-
-
Dobson, C.M.1
Evans, P.A.2
Radford, S.E.3
-
13
-
-
0031444104
-
Folding dynamics of the src SH3 domain
-
Grantcharova V. P., Baker D. Folding dynamics of the src SH3 domain. Biochemistry. 36:1997;15685-15692.
-
(1997)
Biochemistry
, vol.36
, pp. 15685-15692
-
-
Grantcharova, V.P.1
Baker, D.2
-
14
-
-
0031853167
-
Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain
-
Grantcharova V. P., Riddle D. S., Santiago J. V., Baker D. Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain. Nature Struct. Biol. 5:1998;714-720.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 714-720
-
-
Grantcharova, V.P.1
Riddle, D.S.2
Santiago, J.V.3
Baker, D.4
-
15
-
-
0032570543
-
Folding kinetics of the SH3 domain of PI3-kinase by real-time NMR combined with optical spectroscopy
-
Guijarro J. I., Morton C. J., Plaxco K. W., Campbell I. D., Dobson C. M. Folding kinetics of the SH3 domain of PI3-kinase by real-time NMR combined with optical spectroscopy. J. Mol. Biol. 276:1998;657-667.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 657-667
-
-
Guijarro, J.I.1
Morton, C.J.2
Plaxco, K.W.3
Campbell, I.D.4
Dobson, C.M.5
-
16
-
-
0030967896
-
Exploring the folding free energy surface of a three-helix bundle protein
-
Guo Z. Y., Brooks C. L., Boczko E. M. Exploring the folding free energy surface of a three-helix bundle protein. Proc. Natl Acad. Sci. USA. 94:1997;10161-10166.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 10161-10166
-
-
Guo, Z.Y.1
Brooks, C.L.2
Boczko, E.M.3
-
17
-
-
0031815749
-
How do small single-domain proteins fold?
-
Jackson S. E. How do small single-domain proteins fold? Folding Design. 3:1998;R81-R91.
-
(1998)
Folding Design
, vol.3
-
-
Jackson, S.E.1
-
18
-
-
0026345750
-
Folding of chymotrypsin inhibitor-2. 1. Evidence for a 2-state transition
-
Jackson S. E., Fersht A. R. Folding of chymotrypsin inhibitor-2. 1. Evidence for a 2-state transition. Biochemistry. 30:1991a;10428-10435.
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
-
19
-
-
0026342150
-
Folding of chymotrypsin inhibitor-2. 2. Influence of proline isomerization on the folding kinetics and thermodynamic characterization of the transition-state of folding
-
Jackson S. E., Fersht A. R. Folding of chymotrypsin inhibitor-2. 2. Influence of proline isomerization on the folding kinetics and thermodynamic characterization of the transition-state of folding. Biochemistry. 30:1991b;10436-10443.
-
(1991)
Biochemistry
, vol.30
, pp. 10436-10443
-
-
Jackson, S.E.1
Fersht, A.R.2
-
20
-
-
0029949518
-
The biology of E colicins: Paradigms and paradoxes
-
James R., Kleanthous C., Moore G. R. The biology of E colicins: paradigms and paradoxes. Microbiol. UK. 142:1996;1569-1580.
-
(1996)
Microbiol. UK
, vol.142
, pp. 1569-1580
-
-
James, R.1
Kleanthous, C.2
Moore, G.R.3
-
21
-
-
0029061516
-
Protein stability as a function of denaturant concentration - The thermal-stability of barnase in the presence of urea
-
Johnson C. M., Fersht A. R. Protein stability as a function of denaturant concentration - the thermal-stability of barnase in the presence of urea. Biochemistry. 34:1995;6795-6804.
-
(1995)
Biochemistry
, vol.34
, pp. 6795-6804
-
-
Johnson, C.M.1
Fersht, A.R.2
-
22
-
-
0029868589
-
Non-linear free energy relationships in Arc repressor unfolding imply the existence of unstable, native-like folding intermediates
-
Jonsson T., Waldburger C. D., Sauer R. T. Non-linear free energy relationships in Arc repressor unfolding imply the existence of unstable, native-like folding intermediates. Biochemistry. 35:1996;4795-4802.
-
(1996)
Biochemistry
, vol.35
, pp. 4795-4802
-
-
Jonsson, T.1
Waldburger, C.D.2
Sauer, R.T.3
-
23
-
-
0028949547
-
Theoretical-studies of protein folding and unfolding
-
Karplus M., Sali A. Theoretical-studies of protein folding and unfolding. Curr. Opin. Struct. Biol. 5:1995;58-73.
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 58-73
-
-
Karplus, M.1
Sali, A.2
-
24
-
-
0028327236
-
Protein folding dynamics, the diffusion-collision model, and experimental data
-
Karplus M., Weaver D. L. Protein folding dynamics, the diffusion-collision model, and experimental data. Protein Sci. 3:1994;650-668.
-
(1994)
Protein Sci.
, vol.3
, pp. 650-668
-
-
Karplus, M.1
Weaver, D.L.2
-
25
-
-
0027305989
-
Folding and stability of a tryptophan-containing mutant of ubiquitin
-
Khorasanizadeh S., Peters I. D., Butt T. R., Roder H. Folding and stability of a tryptophan-containing mutant of ubiquitin. Biochemistry. 32:1993;7054-7063.
-
(1993)
Biochemistry
, vol.32
, pp. 7054-7063
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Butt, T.R.3
Roder, H.4
-
26
-
-
0030057477
-
Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues
-
Khorasanizadeh S., Peters I. D., Roder H. Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues. Nature Struct. Biol. 3:1996;193-205.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 193-205
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Roder, H.3
-
27
-
-
0029965111
-
Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family
-
Kragelund B. B., Hojrup P., Jensen M. S., Schjerling C. K., Juul E., Knudsen J., Poulsen F. M. Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family. J. Mol. Biol. 256:1996;187-200.
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 187-200
-
-
Kragelund, B.B.1
Hojrup, P.2
Jensen, M.S.3
Schjerling, C.K.4
Juul, E.5
Knudsen, J.6
Poulsen, F.M.7
-
28
-
-
0031465967
-
"New view" of protein folding reconciled with the old through multiple unfolding simulations
-
Lazaridis T., Karplus M. "New view" of protein folding reconciled with the old through multiple unfolding simulations. Science. 278:1997;1928-1931.
-
(1997)
Science
, vol.278
, pp. 1928-1931
-
-
Lazaridis, T.1
Karplus, M.2
-
29
-
-
0031576990
-
Fast and slow tracks in lysozyme folding: Insight into the role of domains in the folding process
-
Matagne A., Radford S. E., Dobson C. M. Fast and slow tracks in lysozyme folding: insight into the role of domains in the folding process. J. Mol. Biol. 267:1997;1068-1074.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1068-1074
-
-
Matagne, A.1
Radford, S.E.2
Dobson, C.M.3
-
30
-
-
0028168139
-
Extrapolation to water of kinetic and equilibrium data for the unfolding of barnase in urea solutions
-
Matouschek A., Matthews J. M., Johnson C. M., Fersht A. R. Extrapolation to water of kinetic and equilibrium data for the unfolding of barnase in urea solutions. Protein Eng. 7:1994;1089-1095.
-
(1994)
Protein Eng.
, vol.7
, pp. 1089-1095
-
-
Matouschek, A.1
Matthews, J.M.2
Johnson, C.M.3
Fersht, A.R.4
-
31
-
-
0030334626
-
Universality and diversity of the protein folding scenarios: A comprehensive analysis with the aid of a lattice model
-
Mirny L. A., Abkevich V., Shakhnovich E. I. Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model. Folding Design. 1:1996;103-116.
-
(1996)
Folding Design
, vol.1
, pp. 103-116
-
-
Mirny, L.A.1
Abkevich, V.2
Shakhnovich, E.I.3
-
32
-
-
0031127043
-
Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: Comparison with Zimm-Bragg and Lifson-Roig formalisms
-
Mu ñ V., Serrano L. Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: comparison with Zimm-Bragg and Lifson-Roig formalisms. Biopolymers. 41:1997;495-509.
-
(1997)
Biopolymers
, vol.41
, pp. 495-509
-
-
Mu Ñ., V.1
Serrano, L.2
-
33
-
-
0028820703
-
Denaturant m-values and heat-capacity changes-relation to changes in accessible surface areas of protein unfolding
-
Myers J. K., Pace C. N., Scholtz J. M. Denaturant m-values and heat-capacity changes-relation to changes in accessible surface areas of protein unfolding. Protein Sci. 4:1995;2138-2148.
-
(1995)
Protein Sci.
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
35
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
Pace C. N. Determination and analysis of urea and guanidine hydrochloride denaturation curves. Methods Enzymol. 131:1986;3286-3299.
-
(1986)
Methods Enzymol.
, vol.131
, pp. 3286-3299
-
-
Pace, C.N.1
-
36
-
-
0030664958
-
An early intermediate in the folding reaction of the B1 domain of protein G contains a native-like core
-
Park S. H., Oneil K. T., Roder H. An early intermediate in the folding reaction of the B1 domain of protein G contains a native-like core. Biochemistry. 36:1997;14277-14283.
-
(1997)
Biochemistry
, vol.36
, pp. 14277-14283
-
-
Park, S.H.1
Oneil, K.T.2
Roder, H.3
-
37
-
-
0031890195
-
Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins
-
Perl D., Welker C., Schindler T., Schroder K., Marahiel M. A., Jaenicke R., Schmid F. X. Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins. Nature Struct. Biol. 5:1998;229-235.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 229-235
-
-
Perl, D.1
Welker, C.2
Schindler, T.3
Schroder, K.4
Marahiel, M.A.5
Jaenicke, R.6
Schmid, F.X.7
-
38
-
-
0031214363
-
A comparison of the folding kinetics and thermodynamics of two homologous fibronectin type III modules
-
Plaxco K. W., Spitzfaden C., Campbell I. D., Dobson C. M. A comparison of the folding kinetics and thermodynamics of two homologous fibronectin type III modules. J. Mol. Biol. 270:1997;763-770.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 763-770
-
-
Plaxco, K.W.1
Spitzfaden, C.2
Campbell, I.D.3
Dobson, C.M.4
-
39
-
-
0032562182
-
The folding kinetics and thermodynamics of the Fyn-SH3 domain
-
Plaxco K. W., Guijarro J. I., Morton C. J., Pitkeathly M., Campbell I. D., Dobson C. M. The folding kinetics and thermodynamics of the Fyn-SH3 domain. Biochemistry. 37:1998a;2529-2537.
-
(1998)
Biochemistry
, vol.37
, pp. 2529-2537
-
-
Plaxco, K.W.1
Guijarro, J.I.2
Morton, C.J.3
Pitkeathly, M.4
Campbell, I.D.5
Dobson, C.M.6
-
40
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco K. W., Simons K. T., Baker D. Contact order, transition state placement and the refolding rates of single domain proteins. J. Mol. Biol. 277:1998b;985-994.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
41
-
-
0031697733
-
The burst phase in ribonuclease A, folding and solvent dependence of the unfolded state
-
Qi P. X., Sosnick T. R., Englander S. W. The burst phase in ribonuclease A, folding and solvent dependence of the unfolded state. Nature Struct. Biol. 5:1998;882-884.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 882-884
-
-
Qi, P.X.1
Sosnick, T.R.2
Englander, S.W.3
-
42
-
-
0026751786
-
The folding of hen lysozyme involves partially structured intermediates and multiple pathways
-
Radford S. E., Dobson C. M., Evans P. A. The folding of hen lysozyme involves partially structured intermediates and multiple pathways. Nature. 358:1992;302-307.
-
(1992)
Nature
, vol.358
, pp. 302-307
-
-
Radford, S.E.1
Dobson, C.M.2
Evans, P.A.3
-
43
-
-
0031937871
-
Stability and folding properties of a model beta-sheet protein, Escherichia coli CspA
-
Reid K. L., Rodriguez H. M., Hillier B. J., Gregoret L. M. Stability and folding properties of a model beta-sheet protein, Escherichia coli CspA. Protein Sci. 7:1998;470-479.
-
(1998)
Protein Sci.
, vol.7
, pp. 470-479
-
-
Reid, K.L.1
Rodriguez, H.M.2
Hillier, B.J.3
Gregoret, L.M.4
-
44
-
-
0030852463
-
Functional rapidly folding proteins from simplified amino acid sequences
-
Riddle D. S., Santiago J. V., BrayHall S. T., Doshi N., Grantcharova V. P., Yi Q., Baker D. Functional rapidly folding proteins from simplified amino acid sequences. Nature Struct. Biol. 4:1997;805-809.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 805-809
-
-
Riddle, D.S.1
Santiago, J.V.2
Brayhall, S.T.3
Doshi, N.4
Grantcharova, V.P.5
Yi, Q.6
Baker, D.7
-
45
-
-
0031055942
-
Kinetic role of early intermediates in protein folding
-
Roder H., Colón W. Kinetic role of early intermediates in protein folding. Curr. Opin. Struct. Biol. 7:1997;15-28.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 15-28
-
-
Roder, H.1
Colón, W.2
-
46
-
-
0023697408
-
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl α-chymotrypsin using different denaturants
-
Santoro M., Bolen D. W. Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl α-chymotrypsin using different denaturants. Biochemistry. 27:1988;8063-8068.
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro, M.1
Bolen, D.W.2
-
48
-
-
0030750236
-
High-energy channeling in protein folding
-
Silow M., Oliveberg M. High-energy channeling in protein folding. Biochemistry. 36:1997a;7633-7637.
-
(1997)
Biochemistry
, vol.36
, pp. 7633-7637
-
-
Silow, M.1
Oliveberg, M.2
-
49
-
-
0030958760
-
Transient aggregates in protein folding are easily mistaken for folding intermediates
-
Silow M., Oliveberg M. Transient aggregates in protein folding are easily mistaken for folding intermediates. Proc. Natl Acad. Sci. USA. 94:1997b;6084-6086.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6084-6086
-
-
Silow, M.1
Oliveberg, M.2
-
51
-
-
0028331876
-
Thermodynamic and kinetic-analysis of the SH3 domain of spectrin shows a 2-state folding transition
-
Viguera A. R., Martinez J. C., Filimonov V. V., Mateo P. L., Serrano L. Thermodynamic and kinetic-analysis of the SH3 domain of spectrin shows a 2-state folding transition. Biochemistry. 33:1994;2142-2150.
-
(1994)
Biochemistry
, vol.33
, pp. 2142-2150
-
-
Viguera, A.R.1
Martinez, J.C.2
Filimonov, V.V.3
Mateo, P.L.4
Serrano, L.5
-
52
-
-
0029760326
-
Different folding transition-states may result in the same native structure
-
Viguera A. R., Serrano L., Wilmanns M. Different folding transition-states may result in the same native structure. Nature Struct. Biol. 3:1996;874-880.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 874-880
-
-
Viguera, A.R.1
Serrano, L.2
Wilmanns, M.3
-
53
-
-
0026724613
-
In vivo and in vitro characterization of overproduced colicin E9 immunity protein
-
Wallis R., Reilly A., Rowe A., Moore G. R., James R., Kleanthous C. In vivo and in vitro characterization of overproduced colicin E9 immunity protein. Eur. J. Biochem. 207:1992;687-695.
-
(1992)
Eur. J. Biochem.
, vol.207
, pp. 687-695
-
-
Wallis, R.1
Reilly, A.2
Rowe, A.3
Moore, G.R.4
James, R.5
Kleanthous, C.6
-
54
-
-
0032512424
-
Specificity in protein-protein recognition: Conserved Im9 residues are the major determinats of stability in the colicin E9 DNase-Im9 complex
-
Wallis R., Leung K.-Y., Osborne M., James R., Moore G., Kleanthous C. Specificity in protein-protein recognition: conserved Im9 residues are the major determinats of stability in the colicin E9 DNase-Im9 complex. Biochemistry. 37:1998;476-485.
-
(1998)
Biochemistry
, vol.37
, pp. 476-485
-
-
Wallis, R.1
Leung, K.-Y.2
Osborne, M.3
James, R.4
Moore, G.5
Kleanthous, C.6
|