Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of α-helical content and compactness

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 5, 2004, Pages 1171-1176

  Uzawa, Takanori ^a   Akiyama, Shuji ^b   Kimura, Tetsunari ^a   Takahashi, Satoshi ^a,c,d   Ishimori, Koichiro ^a   Morishima, Isao ^a   Fujisawa, Tetsuro ^b  

^a KYOTO UNIVERSITY   (Japan)

^b RIKEN HARIMA INSTITUTE   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^d OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

APOMYOGLOBIN;

ALPHA HELIX; ARTICLE; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; DYNAMICS; HYDROGEN BOND; PH; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; RADIATION SCATTERING;

ANIMALS; APOPROTEINS; CIRCULAR DICHROISM; CYTOCHROMES C; HORSES; MYOGLOBIN; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; SCATTERING, RADIATION;

MUS;

EID: 0842299585     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0305376101     Document Type: Article

References (54)

1. Go, N. (1983) Annu. Rev. Biophys. Bioeng. 12, 183-210.
2. Bryngelson, J. D., Onuchic, J. N., Socci, N. D. & Wolynes, P. G. (1995) Proteins 21, 167-195.
3. Daggett, V. & Fersht, A. R. (2003) Trends Biochem. Sci. 28, 18-25.
4. Shoemaker, B. A., Wang, J. & Wolynes, P. G. (1997) Proc. Natl. Acad. Sci. USA 94, 777-782.
5. Aurora, R., Creamer, T. P., Srinivasan, R. & Rose, G. D. (1997) J. Biol. Chem. 272, 1413-1416.
6. Baldwin, R. L. (2003) J. Biol. Chem. 278, 17581-17588.
7. Kauzmann, W. (1959) Adv. Protein Chem. 14, 1-63.
8. Eliezer, D. & Wright, P. E. (1996) J. Mol. Biol. 263, 531-538.
9. Hughson, F. M., Wright, P. E. & Baldwin, R. L. (1990) Science 249, 1544-1548.
10. Kay, M. S. & Baldwin, R. L. (1996) Nat. Struct. Biol. 3, 439-445.
11. Kay, M. S., Ramos, C. H. I. & Baldwin, R. L. (1999) Proc. Natl. Acad. Sci. USA 96, 2007-2012.
12. Jennings, P. A. & Wright, P. E. (1993) Science 262, 892-896.
13. Eliezer, D., Jennings, P. A., Wright, P. E., Doniach, S., Hodgson, K. O. & Tsuruta, H. (1995) Science 270, 487-488.
14. Jamin, M. & Baldwin, R. L. (1998) J. Mol. Biol. 276, 491-504.
15. Jamin, M., Yeh, S. R., Rousseau, D. L. & Baldwin, R. L. (1999) J. Mol. Biol. 292, 731-740.
16. Haruta, N. & Kitagawa, T. (2002) Biochemistry 41, 6595-6604.
17. Ballew, R. M., Sabelko, J. & Gruebele, M. (1996) Nat. Struct. Biol. 3, 923-926.
18. Ballew, R. M., Sabelko, J. & Gruebele, M. (1996) Proc. Natl. Acad. Sci. USA 93, 5759-5764.
19. Gilmanshin, R., Callender, R. H. & Dyer, R. B. (1998) Nat. Struct. Biol. 5, 363-365.
20. Pappu, R. V. & Weaver, D. L. (1998) Protein Sci. 7, 480-490.
21. Reymond, M. T., Merutka, G., Dyson, H. J. & Wright, P. E. (1997) Protein Sci. 6, 706-716.
22. Dill, K. A. (1985) Biochemistry 24, 1501-1509.
23. Takahashi, S., Yeh, S. R., Das, T. K., Chan, C. K., Gottfried, D. S. & Rousseau, D. L. (1997) Nat. Struct. Biol. 4, 44-50.
24. Akiyama, S., Takahashi, S., Ishimori, K. & Morishima, I. (2000) Nat. Struct. Biol. 7, 514-520.
25. Akiyama, S., Takahashi, S., Kimura, T., Ishimori, K., Morishima, I., Nishikawa, Y. & Fujisawa, T. (2002) Proc. Natl. Acad. Sci. USA 99, 1329-1334.
26. Teale, F. W. J. (1959) Biochem. Biophys. Acta 35, 543-543.
27. Goto, Y., Calciano, L. J. & Fink, A. L. (1990) Proc. Natl. Acad. Sci. USA 87, 573-577.
28. Chen, Y. H., Yang, J. T. & Martinez, H. M. (1972) Biochemistry 11, 4120-4131.
29. Fujisawa, T., Inoue, K., Oka, T., Iwamoto, H., Uruga, T., Kumasaka, T., Inoko, Y., Yagi, N., Yamamoto, M. & Ueki, T. (2000) J. Appl. Crystallogr. 33, 797-800.
30. Arai, M., Ito, K., Inobe, T., Nakao, M., Maki, K., Kamagata, K., Kihara, H., Amemiya, Y. & Kuwajima, K. (2002) J. Mol. Biol. 321, 121-132.
31. Kataoka, M., Nishii, I., Fujisawa, T., Ueki, T., Tokunaga, F. & Goto, Y. (1995) J. Mol. Biol. 249, 215-228.
32. Calmettes, P., Durand, D., Desmadril, M., Minard, P., Receveur, V. & Smith, J. C. (1994) Biophys. Chem. 53, 105-113.
33. Semenyuk, A. V. & Svergun, D. I. (1991) J. Appl. Crystallogr. 24, 537-540.
34. Flanagan, J. M., Kataoka, M., Fujisawa, T. & Engelman, D. M. (1993) Biochemistry 32, 10359-10370.
35. Moore, P. B. (1980) J. Appl. Cryst. 13, 168-175.
36. Eliezer, D., Chiba, K., Tsuruta, H., Doniach, S., Hodgson, K. O. & Kihara, H. (1993) Biophys. J. 65, 912-917.
37. Segel, D. J., Eliezer, D., Uversky, V., Fink, A. L., Hodgson, K. O. & Doniach, S. (1999) Biochemistry 38, 15352-15359.
38. Plaxco, K. W., Millett, I. S., Segel, D. J., Doniach, S. & Baker, D. (1999) Nat. Struct. Biol. 6, 554-556.
39. Chen, L. L., Wildegger, G., Kiefhaber, T., Hodgson, K. O. & Doniach, S. (1998) J. Mol. Biol. 276, 225-237.
40. Semisotnov, G. V., Kihara, H., Kotova, N. V., Kimura, K., Amemiya, Y., Wakabayashi, K., Serdyuk, I. N., Timchenko, A. A., Chiba, K., Nikaido, K., et al. (1996) J. Mol. Biol. 262, 559-574.
41. Nishimura, C., Dyson, H. J. & Wright, P. E. (2002) J. Mol. Biol. 322, 483-489.
42. Gulotta, M., Gilmanshin, R., Buscher, T. C., Callender, R. H. & Dyer, R. B. (2001) Biochemistry 40, 5137-5143.
43. Eliezer, D., Yao, J., Dyson, H. J. & Wright, P. E. (1998) Nat. Struct. Biol. 5, 148-155.
44. Eliezer, D., Chung, J., Dyson, H. J. & Wright, P. E. (2000) Biochemistry 39, 2894-2901.
45. Desanctis, G., Ascoli, F. & Brunori, M. (1994) Proc. Natl. Acad. Sci. USA 91, 11507-11511.
46. Garcia, C., Nishimura, C., Cavagnero, S., Dyson, H. J. & Wright, P. E. (2000) Biochemistry 39, 11227-11237.
47. Nishii, I., Kataoka, M., Tokunaga, F. & Goto, Y. (1994) Biochemistry 33, 4903-4909.
48. Loh, S. N., Kay, M. S. & Baldwin, R. L. (1995) Proc. Natl. Acad. Sci. USA 92, 5446-5450.
49. Gutin, A. M., Abkevich, V. I. & Shakhnovich, E. I. (1995) Biochemistry 34, 3066-3076.
50. Thirumalai, D. & Klimov, D. K. (1999) Curr. Opin. Struct. Biol. 9, 197-207.
51. Hardin, C., Luthey-Schulten, Z. & Wolynes, P. G. (1999) Proteins Struct. Funct. Genet. 34, 281-294.
52. Sadqi, M., Lapidus, L. J. & Munoz, V. (2003) Proc. Natl. Acad. Sci. USA 100, 12117-12122.
53. Fernandez, A., Kardos, J. & Goto, Y. (2003) FEBS Lett. 536, 187-192.
54. Elove, G. A., Bhuyan, A. K. & Roder, H. (1994) Biochemistry 33, 6925-6935.