Lactobacillus silagei sp. nov., isolated from orchardgrass silage

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART 12, 2013, Pages 4613-4618

  Tohno, Masanori ^a   Kitahara, Maki ^b   Irisawa, Tomohiro ^b   Masuda, Takaharu ^c,d   Uegaki, Ryuichi ^a   Ohkuma, Moriya ^b   Tajima, Kiyoshi ^a  

^a NATIONAL INSTITUTE OF LIVESTOCK AND GRASSLAND SCIENCE   (Japan)

^b RIKEN BIORESOURCE CENTER   (Japan)

^c IWATE AGRICULTURAL RESEARCH CENTER   (Japan)

^d IWATE UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIAL RNA; FATTY ACID; PEPTIDOGLYCAN; PHES PROTEIN; RNA 16S; SYNTHETASE; TRANSFER RNA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CONTROLLED STUDY; DACTYLIS GLOMERATA; DNA CONTENT; GENOTYPE PHENOTYPE CORRELATION; JAPAN; LACTOBACILLUS; LACTOBACILLUS COLLINOIDES; LACTOBACILLUS KIMCHICUS; LACTOBACILLUS ODORATITOFUI; LACTOBACILLUS PARACOLLINOIDES; LACTOBACILLUS SILAGEI; LACTOBACILLUS SIMILIS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SILAGE; STRAIN DIFFERENCE; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DACTYLIS; DNA, BACTERIAL; FATTY ACIDS; JAPAN; LACTOBACILLUS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SILAGE;

EID: 84889580028     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.053124-0     Document Type: Article

References (26)

1. Cai, Y., Pang, H., Kitahara, M. & Ohkuma, M. (2012). Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus. Int J Syst Evol Microbiol 62, 1140-1144.
2. Ennahar, S., Cai, Y. & Fujita, Y. (2003). Phylogenetic diversity of lactic acid bacteria associated with paddy rice silage as determined by 16S ribosomal DNA analysis. Appl Environ Microbiol 69, 444-451.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Harrison, J. H., Blauwiekel, R. & Stokes, M. R. (1994). Fermentation and utilization of grass silage. J Dairy Sci 77, 3209-3235.
6. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
7. Kitahara, M., Sakamoto, M. & Benno, Y. (2010). Lactobacillus similis sp. nov., isolated from fermented cane molasses. Int J Syst Evol Microbiol 60, 187-190.
8. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Method Microbiol 19, 161-207.
9. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL X version 2.0. Bioinformatics 23, 2947-2948.
10. Li, Y. & Nishino, N. (2011). Monitoring the bacterial community of maize silage stored in a bunker silo inoculated with Enterococcus faecium, Lactobacillus plantarum and Lactobacillus buchneri. J Appl Microbiol 110, 1561-1570.
11. McDonald, P., Henderson, N. & Heron, S. (1991). The Biochemistry of Silage, 2nd edn. Marlow: Chalcombe Publications.
12. Naser, S. M., Thompson, F. L., Hoste, B., Gevers, D., Dawyndt, P., Vancanneyt, M. & Swings, J. (2005). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151, 2141-2150.
13. Naser, S. M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M. & Swings, J. (2007). Identification of lactobacilli by pheS and rpoA gene sequence analyses. Int J Syst Evol Microbiol 57, 2777-2789.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I. & Benno, Y. (2002). Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov. Int J Syst Evol Microbiol 52, 841-849.
16. Stevenson, D. M., Muck, R. E., Shinners, K. J. & Weimer, P. J. (2006). Use of real time PCR to determine population profiles of individual species of lactic acid bacteria in alfalfa silage and stored corn stover. Appl Microbiol Biotechnol 71, 329-338.
17. Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T. & Komagata, K. (1996). Agromyces mediolanus sp. nov., nom. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4-diaminobutyric acid in the cell wall peptidoglycan. Int J Syst Bacteriol 46, 88-93.
18. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
19. Tindall, B. J., Rosselló-Móra, R., Busse, H. J., Ludwig, W. & Kämpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249-266.
20. Tohno, M., Kobayashi, H., Nomura, M., Kitahara, M., Ohkuma, M., Uegaki, R. & Cai, Y. M. (2012a). Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage. Anim Sci J 83, 111-120.
21. Tohno, M., Kobayashi, H., Nomura, M., Uegaki, R. & Cai, Y. M. (2012b). Identification and characterization of lactic acid bacteria isolated from mixed pasture of timothy and orchardgrass, and its badly preserved silage. Anim Sci J 83, 318-330.
22. Tohno, M., Kobayashi, H., Tajima, K. & Uegaki, R. (2012c). Straindependent effects of inoculation of Lactobacillus plantarum subsp. plantarum on fermentation quality of paddy rice (Oryza sativa L. subsp. japonica) silage. FEMS Microbiol Lett 337, 112-119.
23. Tohno, M., Kitahara, M., Inoue, H., Uegaki, R., Irisawa, T., Ohkuma, M. & Tajima, K. (2013a). Weissella oryzae sp. nov., isolated from fermented rice grains. Int J Syst Evol Microbiol 63, 1417-1420.
24. Tohno, M., Kitahara, M., Irisawa, T., Inoue, H., Uegaki, R., Ohkuma, M. & Tajima, K. (2013b). Lactobacillus oryzae sp. nov., isolated from fermented rice grain (Oryza sativa L. subsp. japonica). Int J Syst Evol Microbiol 63, 2957-2962.
25. Tohno, M., Kitahara, M., Irisawa, T., Masuda, T., Uegaki, R., Ohkuma, M. & Tajima, K. (2013c). Description of Lactobacillus iwatensis sp. nov., isolated from orchardgrass (Dactylis glomerata L.) silage in Iwate, Japan, and Lactobacillus backii sp. nov. Int J Syst Evol Microbiol 63, 3854-3860.
26. Tohno, M., Kitahara, M., Uegaki, R., Irisawa, T., Ohkuma, M. & Tajima, K. (2013d). Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage. Int J Syst Evol Microbiol 63, 2526-2531.