메뉴 건너뛰기




Volumn 57, Issue 12, 2007, Pages 2777-2789

Identification of lactobacilli by pheS and rpoA gene sequence analyses

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; PHENYLALANYL TRANSFER RNA SYNTHASE ALPHA; RNA POLYMERASE ALPHA; UNCLASSIFIED DRUG;

EID: 37549058842     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64711-0     Document Type: Article
Times cited : (254)

References (45)
  • 1
    • 4344709161 scopus 로고    scopus 로고
    • Comparative phylogenies of the housekeeping genes atpD, infB, rpoB and the 16S rRNA gene within the Pasteurellaceae
    • Christensen, H., Kuhnert, P., Olsen, J. E. & Bisgaard, M. (2004). Comparative phylogenies of the housekeeping genes atpD, infB, rpoB and the 16S rRNA gene within the Pasteurellaceae. Int J Syst Evol Microbiol 54, 1601-1609.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1601-1609
    • Christensen, H.1    Kuhnert, P.2    Olsen, J.E.3    Bisgaard, M.4
  • 4
    • 0342683835 scopus 로고    scopus 로고
    • Identification and phylogenetic analysis of Lactobacillus using multiplex RAPD-PCR
    • Daud Khaled, D., Neilan, B. A., Henriksson, A. & Conway, P. L. (1997). Identification and phylogenetic analysis of Lactobacillus using multiplex RAPD-PCR. FEMS Microbiol Lett 153, 191-197.
    • (1997) FEMS Microbiol Lett , vol.153 , pp. 191-197
    • Daud Khaled, D.1    Neilan, B.A.2    Henriksson, A.3    Conway, P.L.4
  • 6
    • 0036153759 scopus 로고    scopus 로고
    • Dellaglio, F., Felis, G. E. & Torriani, S. (2002). The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an opinion. Int J Syst Evol Microbiol 52, 285-287.
    • Dellaglio, F., Felis, G. E. & Torriani, S. (2002). The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an opinion. Int J Syst Evol Microbiol 52, 285-287.
  • 7
    • 33747877323 scopus 로고    scopus 로고
    • Dellaglio, F., Vancanneyt, M., Endo, A, Vandamme, P., Fells, G. E., Castioni, A., Fujimoto, J., Watanabe, K. & Okada, S. (2006). Lactobacillus durianis Leisner et al. 2002 is a later heterotypic synonym of Lactobacillus vaccinostercus Kozaki and Okada 1983. Int J Syst Evol Microbiol 56, 1721-1724.
    • Dellaglio, F., Vancanneyt, M., Endo, A, Vandamme, P., Fells, G. E., Castioni, A., Fujimoto, J., Watanabe, K. & Okada, S. (2006). Lactobacillus durianis Leisner et al. 2002 is a later heterotypic synonym of Lactobacillus vaccinostercus Kozaki and Okada 1983. Int J Syst Evol Microbiol 56, 1721-1724.
  • 8
    • 0030032849 scopus 로고    scopus 로고
    • Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei
    • Dicks, L. M., Du Plessis, E. M., Dellaglio, F. & Lauer, E. (1996). Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei. Int J Syst Bacteriol 46, 337-340.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 337-340
    • Dicks, L.M.1    Du Plessis, E.M.2    Dellaglio, F.3    Lauer, E.4
  • 9
    • 0035197715 scopus 로고    scopus 로고
    • Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group
    • Felis, G. E., Dellaglio, F., Mizzi, L. & Torriani, S. (2001). Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group. Int J Syst Evol Microbiol 51, 2113-2117.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 2113-2117
    • Felis, G.E.1    Dellaglio, F.2    Mizzi, L.3    Torriani, S.4
  • 10
    • 33646205046 scopus 로고    scopus 로고
    • Fells, G. E., Vancanneyt, M., Snauwaert, C., Swings, J., Torriani, S. & Castioni, A.andDellaglio, F. (2006). Reclassification of Lactobacillus thermotolerans Niamsup et al. 2003 as a later synonym of Lactobacillus ingluviei Baele et al. 2003. Int J Syst Evol Microbiol 56, 793-795.
    • Fells, G. E., Vancanneyt, M., Snauwaert, C., Swings, J., Torriani, S. & Castioni, A.andDellaglio, F. (2006). Reclassification of Lactobacillus thermotolerans Niamsup et al. 2003 as a later synonym of Lactobacillus ingluviei Baele et al. 2003. Int J Syst Evol Microbiol 56, 793-795.
  • 11
    • 0033376051 scopus 로고    scopus 로고
    • A polyphasic approach towards the identification of strains belonging to Lactobacillus acidophilus and related species
    • Gancheva, A., Pot, B., Vanhonacker, K., Hoste, B. & Kersters, K. (1999). A polyphasic approach towards the identification of strains belonging to Lactobacillus acidophilus and related species. Syst Appl Microbiol 22, 573-585.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 573-585
    • Gancheva, A.1    Pot, B.2    Vanhonacker, K.3    Hoste, B.4    Kersters, K.5
  • 12
    • 0035960740 scopus 로고    scopus 로고
    • Applicability of rep-PCR fingerprinting for identification of Lactobacillus species
    • Gevers, D., Huys, G. & Swings, J. (2001). Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. FEMS Microbiol Lett 205, 31-36.
    • (2001) FEMS Microbiol Lett , vol.205 , pp. 31-36
    • Gevers, D.1    Huys, G.2    Swings, J.3
  • 14
    • 0001835490 scopus 로고
    • The genus Lactobacillus
    • Edited by B. J. B. Wood & W. H. Holzapfel. London: Blackie Academic & Professional
    • Hammes, W. P. & Vogel, R. F. (1995). The genus Lactobacillus. In The Genera of Lactic Acid Bacteria, pp. 19-54. Edited by B. J. B. Wood & W. H. Holzapfel. London: Blackie Academic & Professional.
    • (1995) The Genera of Lactic Acid Bacteria , pp. 19-54
    • Hammes, W.P.1    Vogel, R.F.2
  • 16
    • 37549001985 scopus 로고    scopus 로고
    • Kandler, O. & Weiss, N. (1986). Genus Lactobacillus Beijerinck 1901, 212. In Bergey's Manual of Systematic Bacteriology, 2, pp. 1209-1234. Edited by P. H. A. Sneath, N. S. Mair & J. G. Holt. Baltimore, USA: The Williams and Wilkins Co.
    • Kandler, O. & Weiss, N. (1986). Genus Lactobacillus Beijerinck 1901, 212. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1209-1234. Edited by P. H. A. Sneath, N. S. Mair & J. G. Holt. Baltimore, USA: The Williams and Wilkins Co.
  • 17
    • 0032568570 scopus 로고    scopus 로고
    • Taxonomy and physiology of probiotic lactic acid bacteria
    • Klein, G., Pack A., Bonaparte, C. & Reuter, G. (1998). Taxonomy and physiology of probiotic lactic acid bacteria. Int J Food Microbiol 41, 103-125.
    • (1998) Int J Food Microbiol , vol.41 , pp. 103-125
    • Klein, G.1    Pack, A.2    Bonaparte, C.3    Reuter, G.4
  • 18
    • 24944587193 scopus 로고    scopus 로고
    • Towards a genome-based taxonomy for prokaryotes
    • Konstantinidis, K. T. & Tiedje, J. M. (2005). Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187, 6258-6264.
    • (2005) J Bacteriol , vol.187 , pp. 6258-6264
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 20
    • 1842558296 scopus 로고    scopus 로고
    • Identification method based on PCR combined with automated ribotyping for tracking probiotic Lactobacillus strains colonizing the human gut and vagina
    • Massi, M., Vitali, B., Federici, F., Matteuzzi, D. & Brigidi, P. (2004). Identification method based on PCR combined with automated ribotyping for tracking probiotic Lactobacillus strains colonizing the human gut and vagina. J Appl Microbiol 96, 777-786.
    • (2004) J Appl Microbiol , vol.96 , pp. 777-786
    • Massi, M.1    Vitali, B.2    Federici, F.3    Matteuzzi, D.4    Brigidi, P.5
  • 21
    • 29144473686 scopus 로고    scopus 로고
    • DNA barcoding: Error rates based on comprehensive sampling
    • e422
    • Meyer, C. P. & Paulay, G. (2005). DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 3 (e422).
    • (2005) PLoS Biol , vol.3
    • Meyer, C.P.1    Paulay, G.2
  • 23
    • 0000956572 scopus 로고
    • Lactobacillus amylophilus, a new starch-hydrolyzing species from swine waste-corn fermentation
    • Nakamura, L. K. & Crowell, C. D. (1979). Lactobacillus amylophilus, a new starch-hydrolyzing species from swine waste-corn fermentation. Dev Ind Microbiol 20, 532-540.
    • (1979) Dev Ind Microbiol , vol.20 , pp. 532-540
    • Nakamura, L.K.1    Crowell, C.D.2
  • 25
    • 22144436248 scopus 로고    scopus 로고
    • Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes
    • Naser, S. M., Thompson, F. L., Hoste, B., Gevers, D., Dawyndt, P., Vancanneyt, M. & Swings, J. (2005b). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151, 2141-2150.
    • (2005) Microbiology , vol.151 , pp. 2141-2150
    • Naser, S.M.1    Thompson, F.L.2    Hoste, B.3    Gevers, D.4    Dawyndt, P.5    Vancanneyt, M.6    Swings, J.7
  • 26
    • 33244496692 scopus 로고    scopus 로고
    • Naser, S. M., Hagen, K. E., Vancanneyt, M., Cleenwerck, I., Swings, J. & Tompkins, T. A. (2006a). Lactobacillus suntoryeus Cachat and Priest 2005 is a later synonym of Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980). Int J Syst Evol Microbiol 56, 355-360.
    • Naser, S. M., Hagen, K. E., Vancanneyt, M., Cleenwerck, I., Swings, J. & Tompkins, T. A. (2006a). Lactobacillus suntoryeus Cachat and Priest 2005 is a later synonym of Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980). Int J Syst Evol Microbiol 56, 355-360.
  • 27
  • 28
    • 33746336295 scopus 로고    scopus 로고
    • Naser, S. M., Vancanneyt, M., Hoste, B., Snauwaert, C. & Swings, J. (2006c). Lactobacillus cypricasei Lawson et al. 2001 is a later synonym of Lactobacillus acidipiscis Tanasupawat et al. 2000. Int J Syst Evol Microbiol 56, 1681-1683.
    • Naser, S. M., Vancanneyt, M., Hoste, B., Snauwaert, C. & Swings, J. (2006c). Lactobacillus cypricasei Lawson et al. 2001 is a later synonym of Lactobacillus acidipiscis Tanasupawat et al. 2000. Int J Syst Evol Microbiol 56, 1681-1683.
  • 29
    • 0030904848 scopus 로고    scopus 로고
    • Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population
    • Niemann, S., Puhler, A., Tichy, H. V., Simon, R. & Selbitschka, W. (1997). Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population. J Appl Microbiol 82, 477-484.
    • (1997) J Appl Microbiol , vol.82 , pp. 477-484
    • Niemann, S.1    Puhler, A.2    Tichy, H.V.3    Simon, R.4    Selbitschka, W.5
  • 30
    • 0027412787 scopus 로고
    • Identification and classification of Lactobacillus acidophilus, L. gasseri and L. johnsonii strains by SDS-PAGE and rRNA-targeted oligonucleotide probe hybridization
    • Pot, B., Hertel, C., Ludwig, W., Descheemaeker, P., Kersters, K. & Schleifer, K. H. (1993). Identification and classification of Lactobacillus acidophilus, L. gasseri and L. johnsonii strains by SDS-PAGE and rRNA-targeted oligonucleotide probe hybridization. J Gen Microbiol 139, 513-517.
    • (1993) J Gen Microbiol , vol.139 , pp. 513-517
    • Pot, B.1    Hertel, C.2    Ludwig, W.3    Descheemaeker, P.4    Kersters, K.5    Schleifer, K.H.6
  • 31
    • 0032828131 scopus 로고    scopus 로고
    • The scientific basis for probiotic strains of Lactobacillus
    • Reid, G. (1999). The scientific basis for probiotic strains of Lactobacillus. Appl Environ Microbiol 65, 3763-3766.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3763-3766
    • Reid, G.1
  • 32
    • 0023375195 scopus 로고
    • The neighbour-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 3042826875 scopus 로고    scopus 로고
    • Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins
    • Santos, S. R. & Ochman, H. (2004). Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. Environ Microbiol 6, 754-759.
    • (2004) Environ Microbiol , vol.6 , pp. 754-759
    • Santos, S.R.1    Ochman, H.2
  • 34
    • 0030067516 scopus 로고
    • Phylogeny of the genus Lactobacillus and related genera
    • Schleifer, K. H. & Ludwig, W. (1995). Phylogeny of the genus Lactobacillus and related genera. Syst Appl Microbiol 18, 461-467.
    • (1995) Syst Appl Microbiol , vol.18 , pp. 461-467
    • Schleifer, K.H.1    Ludwig, W.2
  • 37
    • 0030902941 scopus 로고    scopus 로고
    • Lactic acid bacteria of foods and their current taxonomy
    • Stiles, M. E. & Holzapfel, W. H. (1997). Lactic acid bacteria of foods and their current taxonomy. Int J Food Microbiol 36, 1-29.
    • (1997) Int J Food Microbiol , vol.36 , pp. 1-29
    • Stiles, M.E.1    Holzapfel, W.H.2
  • 39
    • 0035430327 scopus 로고    scopus 로고
    • Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA genederived primers
    • Torriani, S., Felis, G. E. & Dellaglio, F. (2001). Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA genederived primers. Appl Environ Microbiol 67, 3450-3454.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3450-3454
    • Torriani, S.1    Felis, G.E.2    Dellaglio, F.3
  • 40
    • 0032883803 scopus 로고    scopus 로고
    • Comparison of ribotyping, randomly amplified polymorphic DNA analysis, and pulsed-field gel electrophoresis in typing of Lactobacillus rhamnosus and L. casei strains
    • Tynkkynen, S., Satokari, R., Saarela, M., Mattila-Sandholm, T. & Saxelin, M. (1999). Comparison of ribotyping, randomly amplified polymorphic DNA analysis, and pulsed-field gel electrophoresis in typing of Lactobacillus rhamnosus and L. casei strains. Appl Environ Microbiol 65, 3908-3914.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3908-3914
    • Tynkkynen, S.1    Satokari, R.2    Saarela, M.3    Mattila-Sandholm, T.4    Saxelin, M.5
  • 44
    • 0345328128 scopus 로고    scopus 로고
    • Gene sequences useful for predicting relatedness of whole genomes in bacteria
    • Zeigler, D. R. (2003). Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int J Syst Evol Microbiol 53, 1893-1900.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1893-1900
    • Zeigler, D.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.