Monitoring of the bacterial and fungal biodiversity and dynamics during Massa Medicata Fermentata fermentation

Applied Microbiology and Biotechnology

Volumn 97, Issue 22, 2013, Pages 9647-9655

  Xu, Yun ^a   Xie, Yan Bo ^b   Zhang, Xin Ran ^a   Chen, Chen ^a   Xiang, Hongyu ^a   Xie, Qiuhong ^a  

^a JILIN UNIVERSITY   (China)

^b JILIN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Bacterial community; Digestive enzyme; Fungal community; Massa Medicata Fermentata fermentation; PCR DGGE

Indexed keywords

BACTERIAL COMMUNITY; CARBOXYMETHYL CELLULASE; COMPREHENSIVE ANALYSIS; DIGESTIVE ENZYMES; FUNGAL COMMUNITY; MICROBIAL COMMUNITY DYNAMICS; PCR-DGGE; POLYMERASE CHAIN REACTION-DENATURING GRADIENT GEL ELECTROPHORESIS;

BACTERIA; BIODIVERSITY; DYNAMICS; ELECTROPHORESIS; ENZYMES; FUNGI; POLYMERASE CHAIN REACTION; PROCESS CONTROL;

FERMENTATION;

AMYLASE; CARBOXYMETHYLCELLULOSE; PROTEINASE; TRIACYLGLYCEROL LIPASE;

BACTERIUM; BIOMONITORING; ELECTROKINESIS; ENZYME ACTIVITY; FERMENTATION; FUNGUS; MICROBIAL COMMUNITY; POLYMERASE CHAIN REACTION; SPECIES DIVERSITY;

ACINETOBACTER; AMYLOMYCES; ARTICLE; BACTERIAL COLONIZATION; BIODIVERSITY; DENATURING GRADIENT GEL ELECTROPHORESIS; ENTEROBACTER; ENZYME ACTIVITY; FERMENTATION TECHNIQUE; FUNGAL COLONIZATION; FUNGAL COMMUNITY; KLEBSIELLA; MASSA MEDICATA FERMENTATA FERMENTATION; MICROBIAL COMMUNITY; MUCOR; NONHUMAN; NUCLEOTIDE SEQUENCE; PEDIOCOCCUS; PHYLOGENY; POLYMERASE CHAIN REACTION; PSEUDOMONAS; RHODOTORULA; SACCHAROMYCES; SEQUENCE ANALYSIS;

ACINETOBACTER; AMYLOMYCES; BACTERIA (MICROORGANISMS); ENTEROBACTER; FUNGI; KLEBSIELLA; MUCOR; PEDIOCOCCUS; PSEUDOMONAS; RHODOTORULA (ERYTHROBASIDIUM CLADE); SACCHAROMYCES;

BACTERIA; BIOTA; DENATURING GRADIENT GEL ELECTROPHORESIS; ENZYMES; FERMENTATION; FOOD MICROBIOLOGY; FUNGI; MEDICINE, CHINESE TRADITIONAL; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

EID: 84888427860     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-013-5187-0     Document Type: Article

References (36)

1. Albano H, Henriques I, Correia A, Hogg T, Teixeira P (2008) Characterization of microbial population of 'Alheira' (a traditional Portuguese fermented sausage) by PCR-DGGE and traditional cultural microbiological methods. J Appl Microbiol 105:2187-2194
2. Alves MH, Campos-Takaki GM, Okada K, Pessoa IHF, Milanez AI (2005) Detection of extracellular protease in Mucor species. Rev Iberoam Micol 22:114-117
3. Barros RR, Carvalho MDGS, Peralta JM, Facklam RR, Teixeira LM (2001) Phenotypic and genotypic characterization of Pediococcus strains isolated from human clinical sources. J Clin Microbiol 39:1241-1246
4. Coca J, Dustet JC (2006) Expression and characterization of lipase produced by Mucor griseocyanus. Biotecnol Apl 23:224-228
5. Endo A, Okada S (2005) Monitoring the lactic acid bacterial diversity during shochu fermentation by PCR-denaturing gradient gel electrophoresis. J Biosci Bioeng 99:216-221
6. Fontana C, Cappa F, Rebecchi A, Cocconcelli PS (2010) Surface microbiota analysis of Taleggio, Gorgonzola, Casera, Scimudin and Formaggio di Fossa Italian cheeses. Int J Food Microbiol 138:205-211
7. Gao H, Jia TZ (2002) The research progress of Massa Medicata Fermentata. Lishizhen Med Materia Medica Res 8:491-493 (in Chinese)
8. Ghose TK (1987) Measurement of cellulase activities. Pure App Chem 59:257-268
9. Haq IU, Abdullah R, Ashraf H, Shah AH (2002) Isolation and screening of fungi for the biosynthesis of alpha amylase. Int J Biot 1:61-66
10. Hu J, Yang XD, Xia QP, Cai ZW (2004) Research on the microorganism in the traditional Chinese medicine 'Shenqu'. J Mudanjiang Med Coll 2:19-20 (in Chinese)
11. Hugenholtz P, Goebel BM, Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180:4765-4774
12. 12 production by Citrobacter freundii or Klebsiella pneumoniae during tempeh fermentation and proof of en-terotoxin absence by PCR. Appl Environ Microbiol 60:1495-1499
13. Kordel M, Hofmann B, Schomburg D, Schmid RD (1991) Extracellular lipase of Pseudomonas sp. strain ATCC 21808: purification, characterization, crystallization, and preliminary X-ray diffraction data. J Bacteriol 173:4836-4841
14. Kumar N, Das D (2000) Production and purification of a-amylases from hydrogen producing Enterobacter cloacae II-BT 08. Bioprocess Eng 23:205-208
15. Marcial J, Perez de los Santos AI, Fernandez FJ, Diaz-Godinez G, Montiel-Gonzalez AM, Tomasini A (2011) Characterization of an aspartic protease produced by Amylomyces rouxii. Rev Mex Ing Quim 1:9-16
16. May LA, Smiley B, Schmidt MG (2001) Comparative denaturing gradient gel electrophoresis analysis of fungal community associated with whole plant corn silage. Can J Microbiol 47:829-841
17. Miller GL (1959) Use of dinitrosalicylic acid reagent for the determination of reducing sugar. Anal Chem 31:426-428
18. Moehle CM, Aynardi MW, Kolodny MR, Park FJ, Jones EW (1987) Protease B of Saccharomyces cerevisiae: isolation and regulation of the PRBl Structural Gene. Genetics 115:255-263
19. Mohamed SA, Abdel-Mageed HM, Tayel SA, El-Nabrawi MA, Fahmy AS (2011) Characterization of Mucor racemosus lipase with potential application for the treatment of cellulite. Process Biochem 46:642-648
20. Mohapatra BR, Banerjee UC, Bapuji M (1998) Characterization of a fungal amylase from Mucor sp. associated with the marine sponge Spirastrella sp. J Biotechnol 60:113-117
21. Muyzer G, Smalla K (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73:127-141
22. Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700
23. Nakai R, Abe T, Baba T, Imura S, Kagoshima H, Kanda H, Kanekiyo A, Kohara Y, Koi A, Nakamura K, Narita T, Niki H, Yanagihara K, Naganuma T (2012) MicroXorae of aquatic moss pillars in a freshwater lake, East Antarctica, based on fatty acid and 16S rRNA gene analyses. Polar Biol 35:425-433
24. Rajesh T, Kim YH, Choi YK, Jeon JM, Kim HJ, Park SH, Park HY, Choi KY, Kim H, Kim HJ, Lee SH, Yang YH (2013) Identification and functional characterization of an a-amylase with broad temperature and pH stability from Paenibacillus sp. Appl Biochem Biotechnol 170:359-369
25. Ruiz P, Seseña S, Izquierdo PM, Palop ML (2010) Bacterial biodiversity and dynamics during malolactic fermentation of Tempranillo wines as determined by a culture-independent method (PCR-DGGE). Appl Microbiol Biotechnol 86:1555-1562
26. Sinkuniene D, Kiriliauskaite V, Bendikiene I, Juodka B (2008) Properties and immobilization of Enterobacter aerogenes 13 lipase. Roumanian Biotechnol Lett 13:1-8
27. Tao CX (2000) The tonifying spleen and digestion of herbal leaven. China J Tradit Chin Med 3:33-33
28. Valente JJ, Fryksdale BG, Dale DA, Gaertner AL, Henry CS (2006) Screening for physical stability of a Pseudomonas amylase using self-interaction chromatography. Anal Biochem 357:35-42
29. Wang HY, Gao YB, Fan QW, Xu Y (2011) Characterization and comparison of microbial community of different typical Chinese liquor Daqus by PCR-DGGE. Lett Appl Microbiol 53:134-140
30. Wang HY, Gao WY, Zhang LX (2012) Influence of different processing techniques of Massa Medicata Fermentata on their amylase activity. China J Chin Materia Medica 37:2084-2087
31. Wu TX, Wang N, Zhang Y, Xu XB (2013) Advances in the study on microbial fermentation and transformation of traditional Chinese medicine. Afr J Microbiol Res 7:1644-1650
32. Yang JX, Cai JP, Zhu L (2005) The application of cellulase in the Chinese medicine ingredient extraction. Chin Herb Med 1:64-67
33. Yong XY, Cui YQ, Chen LH, Ran W, Shen QR, Yang XM (2011) Dynamics of bacterial community during solid-state fermentation using agro-industrial wastes to produce poly-γ-glutamic acid, revealed by real-time PCR and denaturing gradient gel electrophoresis (DGGE). Appl Microbiol Biotechnol 92:717-725
34. Zhang LX, Gao WY, Wang HY (2012a) Identification of microorganism from traditional Chinese medicine Massa Medicata Fermentata. China J Chin Materia Medica 37:1928-1931 (in Chinese)
35. Zhang LX, Gao WY, Wang HY (2012b) Review of traditional Chinese medicine processed by fermentation. China J Chin Materia Medica 24:3695-3700
36. Zhou JZ, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62:316-322