Comparative denaturing gradient gel electrophoresis analysis of fungal communities associated with whole plant corn silage

Canadian Journal of Microbiology

Volumn 47, Issue 9, 2001, Pages 829-841

  May, L A ^a   Smiley, B ^a   Schmidt, M G ^a  

^a MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

DGGE; Fungi; OTU; Silage

Indexed keywords

AGRICULTURE; ECOSYSTEMS; FERMENTATION; FUNGI; GELS; GRAIN (AGRICULTURAL PRODUCT); METABOLITES; OXYGEN; PLANTS (BOTANY);

BACTERIAL INOCULANTS;

ELECTROPHORESIS;

FORAGE;

ANALYTIC METHOD; ANIMAL FOOD; ARTICLE; BIODIVERSITY; COMPARATIVE STUDY; CORN; DENATURING GRADIENT GEL ELECTROPHORESIS; FEEDING; FERMENTATION; FUNGUS; INOCULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT; PRIORITY JOURNAL;

EID: 0034767175     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/w01-086     Document Type: Article

References (40)

1. PCR primers that amplify fungal rRNA genes from environmental samples
2. Influence of Lactobacillus spp. from an inoculant and of Weissella and Leuconostoc spp. from forage crops on silage fermentation
3. Direct profiling of the yeast dynamics in wine fermentation
4. Responses of lactic acid bacteria to oxygen
5. Species diversity and distribution of biomass above and below ground among ectomycorrhizal fungi in an old-growth Norway spruce forest in south Sweden
6. Compilation of small ribosomal subunit RNA sequences
7. Evaluation of methods for sampling, recovery, and enumeration of bacteria applied to the phylloplane
8. Levels of bacteria, fungi, and endotoxin in bulk and aerosolized corn silage
9. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
10. The ultrastructure of the rhizoplane and rhizosphere
11. Community structure of ectomycorrhizal fungi in a Pinus muricata forest: Above- and below-ground views
12. ITS-RFLP matching for identification of fungi
13. Molecular identification of wood-inhabiting fungi in an unmanaged Picea abies forest in Sweden
14. Ectomycorrhizal fungal communities in late successional Swedish boreal forest, and their composition following wildfire
15. Ectomycorrhizal community structure in limed spruce forest
16. Inter- and intraspecific variation in the ITS region of RDNA of ectomycorrhizal fungi in Fennoscandia as detected by endonuclease analysis
17. Comparative analysis of five methods for recovering rhizobacteria from cotton roots
18. Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18s rDNA
19. Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
20. Microbial dynamics during aerobic detererioration of silages
21. The RDP (Ribosomal Database Project) continues
22. Microorganisms
23. Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
24. Aerobic deterioration of corn silage relative to the soil face
25. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
26. Detection and localization of single base changes by denaturing gradient gel electrophoresis
27. Effect of the indigenous microflora on the development of root and crown rot caused by Pythium aphanidermatum in cucumber grown on rockwool
28. Selective enrichment of defined 2,3,5,6-tetrachlorobiphenyl ortho-dechlorinating microbial consortia and monitoring of population profiles by comparative sequence analysis of16S rDNA
29. Getting started with yeast
30. Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis
31. Acetic acid bacteria can initiate aerobic deterioration of maize silage
32. A repeatable model system for silage fermentation in culture tubes
33. Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA
34. Genetic differentiation between European and North American populations of Phlebiopsis gigantea
35. Analysis of the dynamics of fungal communities in soil via fungal specific PCR of soil DNA followed by denaturing gradient gel electrophoresis
36. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
37. New trends and opportunities in the development and use of inoculants for silage
38. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
39. Inhibition and facilitation of nucleic acid amplification
40. The detrimental effects of air on silage