메뉴 건너뛰기




Volumn 382, Issue 1, 2014, Pages 633-641

Chromatin and epigenetic determinants of estrogen receptor alpha (ESR1) signaling

Author keywords

Chromatin; Epigenetic; Estrogen receptor; FOXA1; Pioneer factor; Transcriptional regulation

Indexed keywords

ESTROGEN RECEPTOR ALPHA; PROGESTERONE RECEPTOR; UNTRANSLATED RNA;

EID: 84888330578     PISSN: 03037207     EISSN: 18728057     Source Type: Journal    
DOI: 10.1016/j.mce.2013.04.026     Document Type: Article
Times cited : (44)

References (118)
  • 2
    • 79952755547 scopus 로고    scopus 로고
    • CARM1 is an important determinant of ERα-dependent breast cancer cell differentiation and proliferation in breast cancer cells
    • Al-Dhaheri M., Wu J., Skliris G.P., Li J., Higashimato K., Wang Y., White K.P., Lambert P., Zhu Y., Murphy L., et al. CARM1 is an important determinant of ERα-dependent breast cancer cell differentiation and proliferation in breast cancer cells. Cancer Research 2011, 71:2118-2128. 10.1158/0008-5472.CAN-10-2426.
    • (2011) Cancer Research , vol.71 , pp. 2118-2128
    • Al-Dhaheri, M.1    Wu, J.2    Skliris, G.P.3    Li, J.4    Higashimato, K.5    Wang, Y.6    White, K.P.7    Lambert, P.8    Zhu, Y.9    Murphy, L.10
  • 4
    • 80053144962 scopus 로고    scopus 로고
    • A decade of exploring the cancer epigenome - biological and translational implications
    • Baylin S.B., Jones P.A. A decade of exploring the cancer epigenome - biological and translational implications. Nature Reviews Cancer 2011, 11:726-734. 10.1038/nrc3130.
    • (2011) Nature Reviews Cancer , vol.11 , pp. 726-734
    • Baylin, S.B.1    Jones, P.A.2
  • 6
    • 33746219660 scopus 로고    scopus 로고
    • The design of transcription-factor binding sites is affected by combinatorial regulation
    • Bilu Y., Barkai N. The design of transcription-factor binding sites is affected by combinatorial regulation. Genome Biology 2005, 6:R103. 10.1186/gb-2005-6-12-r103.
    • (2005) Genome Biology , vol.6
    • Bilu, Y.1    Barkai, N.2
  • 8
    • 84871756139 scopus 로고    scopus 로고
    • A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor α target genes
    • Bonneville R., Jin V.X. A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor α target genes. Bioinformatics (Oxford, England) 2012, 10.1093/bioinformatics/bts639.
    • (2012) Bioinformatics (Oxford, England)
    • Bonneville, R.1    Jin, V.X.2
  • 9
    • 2542463869 scopus 로고    scopus 로고
    • Genome-wide identification of high-affinity estrogen response elements in human and mouse
    • Bourdeau V. Genome-wide identification of high-affinity estrogen response elements in human and mouse. Molecular Endocrinology (Baltimore, Md.) 2004, 18:1411-1427. 10.1210/me.2003-0441.
    • (2004) Molecular Endocrinology (Baltimore, Md.) , vol.18 , pp. 1411-1427
    • Bourdeau, V.1
  • 10
    • 46849122491 scopus 로고    scopus 로고
    • E2-mediated cathepsin D (CTSD) activation involves looping of distal enhancer elements
    • Bretschneider N., Kangaspeska S., Seifert M., Reid G., Gannon F., Denger S. E2-mediated cathepsin D (CTSD) activation involves looping of distal enhancer elements. Molecular Oncology 2008, 2:182-190. 10.1016/j.molonc.2008.05.004.
    • (2008) Molecular Oncology , vol.2 , pp. 182-190
    • Bretschneider, N.1    Kangaspeska, S.2    Seifert, M.3    Reid, G.4    Gannon, F.5    Denger, S.6
  • 11
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • Cancer Genome Atlas Network Comprehensive molecular portraits of human breast tumours. Nature 2012, 490:61-70. 10.1038/nature11412.
    • (2012) Nature , vol.490 , pp. 61-70
    • Cancer Genome Atlas Network1
  • 14
    • 0036184236 scopus 로고    scopus 로고
    • Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
    • Cirillo L.A., Lin F.R., Cuesta I., Friedman D., Jarnik M., Zaret K.S. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Molecular Cell 2002, 9:279-289.
    • (2002) Molecular Cell , vol.9 , pp. 279-289
    • Cirillo, L.A.1    Lin, F.R.2    Cuesta, I.3    Friedman, D.4    Jarnik, M.5    Zaret, K.S.6
  • 15
    • 77954855829 scopus 로고    scopus 로고
    • Non-coding RNAs: Meet thy masters
    • Costa F.F. Non-coding RNAs: Meet thy masters. BioEssays 2010, 32:599-608. 10.1002/bies.200900112.
    • (2010) BioEssays , vol.32 , pp. 599-608
    • Costa, F.F.1
  • 17
    • 84863621527 scopus 로고    scopus 로고
    • Cancer epigenetics: from mechanism to therapy
    • Dawson M.A., Kouzarides T. Cancer epigenetics: from mechanism to therapy. Cell 2012, 150:12-27. 10.1016/j.cell.2012.06.013.
    • (2012) Cell , vol.150 , pp. 12-27
    • Dawson, M.A.1    Kouzarides, T.2
  • 18
    • 0033800796 scopus 로고    scopus 로고
    • BRG-1 is recruited to estrogen-responsive promoters and cooperates with factors involved in histone acetylation
    • DiRenzo J., Shang Y., Phelan M., Sif S., Myers M., Kingston R., Brown M. BRG-1 is recruited to estrogen-responsive promoters and cooperates with factors involved in histone acetylation. Molecular and Cellular Biology 2000, 20:7541-7549.
    • (2000) Molecular and Cellular Biology , vol.20 , pp. 7541-7549
    • DiRenzo, J.1    Shang, Y.2    Phelan, M.3    Sif, S.4    Myers, M.5    Kingston, R.6    Brown, M.7
  • 19
    • 34447130861 scopus 로고    scopus 로고
    • Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer
    • Eeckhoute J., Keeton E.K., Lupien M., Krum S.A., Carroll J.S., Brown M. Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer. Cancer Research 2007, 67:6477-6483. 10.1158/0008-5472.CAN-07-0746.
    • (2007) Cancer Research , vol.67 , pp. 6477-6483
    • Eeckhoute, J.1    Keeton, E.K.2    Lupien, M.3    Krum, S.A.4    Carroll, J.S.5    Brown, M.6
  • 20
    • 61849119137 scopus 로고    scopus 로고
    • Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers
    • Eeckhoute J., Lupien M., Meyer C.A., Verzi M.P., Shivdasani R.A., Liu X.S., Brown M. Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. Genome Research 2009, 19:372-380. 10.1101/gr.084582.108.
    • (2009) Genome Research , vol.19 , pp. 372-380
    • Eeckhoute, J.1    Lupien, M.2    Meyer, C.A.3    Verzi, M.P.4    Shivdasani, R.A.5    Liu, X.S.6    Brown, M.7
  • 22
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium
    • ENCODE Project Consortium, Bernstein B.E., Birney E., Dunham I., Green E.D., Gunter C., Snyder M. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489:57-74. 10.1038/nature11247.
    • (2012) Nature , vol.489 , pp. 57-74
    • Bernstein, B.E.1    Birney, E.2    Dunham, I.3    Green, E.D.4    Gunter, C.5    Snyder, M.6
  • 23
    • 78650747491 scopus 로고    scopus 로고
    • Discovery and characterization of chromatin states for systematic annotation of the human genome
    • Ernst J., Kellis M. Discovery and characterization of chromatin states for systematic annotation of the human genome. Nature Biotechnology 2010, 28:817-825. 10.1038/nbt.1662.
    • (2010) Nature Biotechnology , vol.28 , pp. 817-825
    • Ernst, J.1    Kellis, M.2
  • 25
    • 78049414227 scopus 로고    scopus 로고
    • Epigenetic reprogramming in plant and animal development
    • Feng S., Jacobsen S.E., Reik W. Epigenetic reprogramming in plant and animal development. Science (New York, NY) 2010, 330:622-627. 10.1126/science.1190614.
    • (2010) Science (New York, NY) , vol.330 , pp. 622-627
    • Feng, S.1    Jacobsen, S.E.2    Reik, W.3
  • 26
    • 77954853506 scopus 로고    scopus 로고
    • Research resource: expression profiling reveals unexpected targets and functions of the human steroid receptor RNA activator (SRA) gene
    • Foulds C.E., Tsimelzon A., Long W., Le A., Tsai S.Y., Tsai M.-J., O'Malley B.W. Research resource: expression profiling reveals unexpected targets and functions of the human steroid receptor RNA activator (SRA) gene. Molecular Endocrinology (Baltimore, Md.) 2010, 24:1090-1105. 10.1210/me.2009-0427.
    • (2010) Molecular Endocrinology (Baltimore, Md.) , vol.24 , pp. 1090-1105
    • Foulds, C.E.1    Tsimelzon, A.2    Long, W.3    Le, A.4    Tsai, S.Y.5    Tsai, M.-J.6    O'Malley, B.W.7
  • 30
    • 84868324642 scopus 로고    scopus 로고
    • Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
    • Gertz J., Reddy T.E., Varley K.E., Garabedian M.J., Myers R.M. Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner. Genome Research 2012, 10.1101/gr.135681.111.
    • (2012) Genome Research
    • Gertz, J.1    Reddy, T.E.2    Varley, K.E.3    Garabedian, M.J.4    Myers, R.M.5
  • 33
    • 0036185782 scopus 로고    scopus 로고
    • Allosteric regulation of estrogen receptor structure, function, and coactivator recruitment by different estrogen response elements
    • Hall J.M., McDonnell D.P., Korach K.S. Allosteric regulation of estrogen receptor structure, function, and coactivator recruitment by different estrogen response elements. Molecular Endocrinology (Baltimore, Md.) 2002, 16:469-486.
    • (2002) Molecular Endocrinology (Baltimore, Md.) , vol.16 , pp. 469-486
    • Hall, J.M.1    McDonnell, D.P.2    Korach, K.S.3
  • 34
    • 79952539053 scopus 로고    scopus 로고
    • ATP-dependent chromatin remodeling: genetics, genomics and mechanisms
    • Hargreaves D.C., Crabtree G.R. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Cell Research 2011, 21:396-420. 10.1038/cr.2011.32.
    • (2011) Cell Research , vol.21 , pp. 396-420
    • Hargreaves, D.C.1    Crabtree, G.R.2
  • 36
    • 84861889354 scopus 로고    scopus 로고
    • Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics
    • He H.H., Meyer C.A., Chen M.W., Jordan V.C., Brown M., Liu X.S. Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics. Genome Research 2012, 22:1015-1025. 10.1101/gr.133280.111.
    • (2012) Genome Research , vol.22 , pp. 1015-1025
    • He, H.H.1    Meyer, C.A.2    Chen, M.W.3    Jordan, V.C.4    Brown, M.5    Liu, X.S.6
  • 39
    • 80052805267 scopus 로고    scopus 로고
    • Histone modification: cause or cog?
    • Henikoff S., Shilatifard A. Histone modification: cause or cog?. Trends in Genetics: TIG 2011, 27:389-396. 10.1016/j.tig.2011.06.006.
    • (2011) Trends in Genetics: TIG , vol.27 , pp. 389-396
    • Henikoff, S.1    Shilatifard, A.2
  • 41
    • 78651250284 scopus 로고    scopus 로고
    • FOXA1 is a key determinant of estrogen receptor function and endocrine response
    • Hurtado A., Holmes K.A., Ross-Innes C.S., Schmidt D., Carroll J.S. FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nature Genetics 2010, 43:27-33. 10.1038/ng.730.
    • (2010) Nature Genetics , vol.43 , pp. 27-33
    • Hurtado, A.1    Holmes, K.A.2    Ross-Innes, C.S.3    Schmidt, D.4    Carroll, J.S.5
  • 42
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T., Allis C.D. Translating the histone code. Science 2001, 293:1074-1080. 10.1126/science.1063127.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 43
    • 84863986133 scopus 로고    scopus 로고
    • Functions of DNA methylation: islands, start sites, gene bodies and beyond
    • Jones P.A. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nature Reviews Genetics 2012, 13:484-492. 10.1038/nrg3230.
    • (2012) Nature Reviews Genetics , vol.13 , pp. 484-492
    • Jones, P.A.1
  • 44
    • 79957633045 scopus 로고    scopus 로고
    • Expanding the paradigm for estrogen receptor binding and transcriptional activation
    • Joshi S.R., Ghattamaneni R.B., Scovell W.M. Expanding the paradigm for estrogen receptor binding and transcriptional activation. Molecular Endocrinology (Baltimore, Md.) 2011, 25:980-994. 10.1210/me.2010-0302.
    • (2011) Molecular Endocrinology (Baltimore, Md.) , vol.25 , pp. 980-994
    • Joshi, S.R.1    Ghattamaneni, R.B.2    Scovell, W.M.3
  • 45
    • 84869046644 scopus 로고    scopus 로고
    • Nucleosome dynamics: HMGB1 relaxes canonical nucleosome structure to facilitate estrogen receptor binding
    • Joshi S.R., Sarpong Y.C., Peterson R.C., Scovell W.M. Nucleosome dynamics: HMGB1 relaxes canonical nucleosome structure to facilitate estrogen receptor binding. Nucleic Acids Research 2012, 10.1093/nar/gks815.
    • (2012) Nucleic Acids Research
    • Joshi, S.R.1    Sarpong, Y.C.2    Peterson, R.C.3    Scovell, W.M.4
  • 49
    • 0023034983 scopus 로고
    • An estrogen-responsive element derived from the 5' flanking region of the Xenopus vitellogenin A2 gene functions in transfected human cells
    • Klein-Hitpaß L., Schorpp M., Wagner U., Ryffel G.U. An estrogen-responsive element derived from the 5' flanking region of the Xenopus vitellogenin A2 gene functions in transfected human cells. Cell 1986, 46:1053-1061. 10.1016/0092-8674(86)90705-1.
    • (1986) Cell , vol.46 , pp. 1053-1061
    • Klein-Hitpaß, L.1    Schorpp, M.2    Wagner, U.3    Ryffel, G.U.4
  • 50
    • 80052398200 scopus 로고    scopus 로고
    • Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state
    • Kong S.L., Li G., Loh S.L., Sung W.-K., Liu E.T. Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state. Molecular Systems Biology 2011, 7:526. 10.1038/msb.2011.59.
    • (2011) Molecular Systems Biology , vol.7 , pp. 526
    • Kong, S.L.1    Li, G.2    Loh, S.L.3    Sung, W.-K.4    Liu, E.T.5
  • 51
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T. Chromatin modifications and their function. Cell 2007, 128:693-705. 10.1016/j.cell.2007.02.005.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 52
    • 0032006563 scopus 로고    scopus 로고
    • P300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation
    • Kraus W.L., Kadonaga J.T. P300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation. Genes & Development 1998, 12:331-342.
    • (1998) Genes & Development , vol.12 , pp. 331-342
    • Kraus, W.L.1    Kadonaga, J.T.2
  • 54
    • 0023808861 scopus 로고
    • The estrogen receptor binds tightly to its responsive element as a ligand-induced homodimer
    • Kumar V., Chambon P. The estrogen receptor binds tightly to its responsive element as a ligand-induced homodimer. Cell 1988, 55:145-156.
    • (1988) Cell , vol.55 , pp. 145-156
    • Kumar, V.1    Chambon, P.2
  • 59
    • 84862908850 scopus 로고    scopus 로고
    • Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
    • Li G., Ruan X., Auerbach R.K., Sandhu K.S., Zheng M., Wang P., Poh H.M., Goh Y., Lim J., Zhang J., et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 2012, 148:84-98. 10.1016/j.cell.2011.12.014.
    • (2012) Cell , vol.148 , pp. 84-98
    • Li, G.1    Ruan, X.2    Auerbach, R.K.3    Sandhu, K.S.4    Zheng, M.5    Wang, P.6    Poh, H.M.7    Goh, Y.8    Lim, J.9    Zhang, J.10
  • 60
    • 84871539869 scopus 로고    scopus 로고
    • Foxa2 and H2A.Z mediate nucleosome depletion during embryonic stem cell differentiation
    • Li Z., Gadue P., Chen K., Jiao Y., Tuteja G., Schug J., Li W., Kaestner K.H. Foxa2 and H2A.Z mediate nucleosome depletion during embryonic stem cell differentiation. Cell 2012, 151:1608-1616. 10.1016/j.cell.2012.11.018.
    • (2012) Cell , vol.151 , pp. 1608-1616
    • Li, Z.1    Gadue, P.2    Chen, K.3    Jiao, Y.4    Tuteja, G.5    Schug, J.6    Li, W.7    Kaestner, K.H.8
  • 63
    • 2442494302 scopus 로고    scopus 로고
    • Recruitment of distinct chromatin-modifying complexes by tamoxifen-complexed estrogen receptor at natural target gene promoters in vivo
    • Liu X.-F., Bagchi M.K. Recruitment of distinct chromatin-modifying complexes by tamoxifen-complexed estrogen receptor at natural target gene promoters in vivo. The Journal of Biological Chemistry 2004, 279:15050-15058. 10.1074/jbc.M311932200.
    • (2004) The Journal of Biological Chemistry , vol.279 , pp. 15050-15058
    • Liu, X.-F.1    Bagchi, M.K.2
  • 64
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8A resolution
    • Luger K., Mäder A.W., Richmond R.K., Sargent D.F., Richmond T.J. Crystal structure of the nucleosome core particle at 2.8A resolution. Nature 1997, 389:251-260. 10.1038/38444.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mäder, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 65
    • 40849085514 scopus 로고    scopus 로고
    • FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
    • Lupien M., Eeckhoute J., Meyer C.A., Wang Q., Zhang Y., Li W., Carroll J.S., Liu X.S., Brown M. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 2008, 132:958-970. 10.1016/j.cell.2008.01.018.
    • (2008) Cell , vol.132 , pp. 958-970
    • Lupien, M.1    Eeckhoute, J.2    Meyer, C.A.3    Wang, Q.4    Zhang, Y.5    Li, W.6    Carroll, J.S.7    Liu, X.S.8    Brown, M.9
  • 68
    • 81755160905 scopus 로고    scopus 로고
    • PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer
    • Magnani L., Ballantyne E.B., Zhang X., Lupien M. PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer. PLoS Genetics 2011, 7:e1002368. 10.1371/journal.pgen.1002368.
    • (2011) PLoS Genetics , vol.7
    • Magnani, L.1    Ballantyne, E.B.2    Zhang, X.3    Lupien, M.4
  • 69
    • 80054084614 scopus 로고    scopus 로고
    • Pioneer factors: directing transcriptional regulators within the chromatin environment
    • Magnani L., Eeckhoute J., Lupien M. Pioneer factors: directing transcriptional regulators within the chromatin environment. Trends in Genetics: TIG 2011, 27:465-474. 10.1016/j.tig.2011.07.002.
    • (2011) Trends in Genetics: TIG , vol.27 , pp. 465-474
    • Magnani, L.1    Eeckhoute, J.2    Lupien, M.3
  • 71
    • 2642544592 scopus 로고    scopus 로고
    • Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
    • Métivier R., Penot G., Hübner M.R., Reid G., Brand H., Kos M., Gannon F. Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 2003, 115:751-763.
    • (2003) Cell , vol.115 , pp. 751-763
    • Métivier, R.1    Penot, G.2    Hübner, M.R.3    Reid, G.4    Brand, H.5    Kos, M.6    Gannon, F.7
  • 74
    • 33744903415 scopus 로고    scopus 로고
    • Identification of the MLL2 Complex as a Coactivator for Estrogen Receptor
    • Mo R. Identification of the MLL2 Complex as a Coactivator for Estrogen Receptor. The Journal of Biological Chemistry 2006, 281:15714-15720. 10.1074/jbc.M513245200.
    • (2006) The Journal of Biological Chemistry , vol.281 , pp. 15714-15720
    • Mo, R.1
  • 79
    • 0037351881 scopus 로고    scopus 로고
    • Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling
    • Reid G., Hübner M.R., Métivier R., Brand H., Denger S., Manu D., Beaudouin J., Ellenberg J., Gannon F. Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling. Molecular Cell 2003, 11:695-707.
    • (2003) Molecular Cell , vol.11 , pp. 695-707
    • Reid, G.1    Hübner, M.R.2    Métivier, R.3    Brand, H.4    Denger, S.5    Manu, D.6    Beaudouin, J.7    Ellenberg, J.8    Gannon, F.9
  • 80
    • 84865550686 scopus 로고    scopus 로고
    • Estradiol receptors in breast cancer cells: associated co-factors as targets for new therapeutic approaches
    • Renoir J.-M. Estradiol receptors in breast cancer cells: associated co-factors as targets for new therapeutic approaches. Steroids 2012, 77:1249-1261. 10.1016/j.steroids.2012.07.019.
    • (2012) Steroids , vol.77 , pp. 1249-1261
    • Renoir, J.-M.1
  • 81
    • 79952384705 scopus 로고    scopus 로고
    • Cancer epigenetics reaches mainstream oncology
    • Rodríguez-Paredes M., Esteller M. Cancer epigenetics reaches mainstream oncology. Nature Medicine 2011, 17:330-339. 10.1038/nm.2305.
    • (2011) Nature Medicine , vol.17 , pp. 330-339
    • Rodríguez-Paredes, M.1    Esteller, M.2
  • 83
    • 79961170994 scopus 로고    scopus 로고
    • A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
    • Salmena L., Poliseno L., Tay Y., Kats L., Pandolfi P.P. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?. Cell 2011, 146:353-358. 10.1016/j.cell.2011.07.014.
    • (2011) Cell , vol.146 , pp. 353-358
    • Salmena, L.1    Poliseno, L.2    Tay, Y.3    Kats, L.4    Pandolfi, P.P.5
  • 84
    • 70149105669 scopus 로고    scopus 로고
    • The role of human bromodomains in chromatin biology and gene transcription
    • Sanchez R., Zhou M.-M. The role of human bromodomains in chromatin biology and gene transcription. Current Opinion in Drug Discovery & Development 2009, 12:659-665.
    • (2009) Current Opinion in Drug Discovery & Development , vol.12 , pp. 659-665
    • Sanchez, R.1    Zhou, M.-M.2
  • 86
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • Sanyal A., Lajoie B.R., Jain G., Dekker J. The long-range interaction landscape of gene promoters. Nature 2012, 489:109-113. 10.1038/nature11279.
    • (2012) Nature , vol.489 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 87
    • 36849074774 scopus 로고    scopus 로고
    • Dynamics and interplay of nuclear architecture, genome organization, and gene expression
    • Schneider R., Grosschedl R. Dynamics and interplay of nuclear architecture, genome organization, and gene expression. Genes & Development 2007, 21:3027-3043. 10.1101/gad.1604607.
    • (2007) Genes & Development , vol.21 , pp. 3027-3043
    • Schneider, R.1    Grosschedl, R.2
  • 88
    • 64349088929 scopus 로고    scopus 로고
    • Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA
    • Sekiya T., Muthurajan U.M., Luger K., Tulin A.V., Zaret K.S. Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA. Genes & Development 2009, 23:804-809. 10.1101/gad.1775509.
    • (2009) Genes & Development , vol.23 , pp. 804-809
    • Sekiya, T.1    Muthurajan, U.M.2    Luger, K.3    Tulin, A.V.4    Zaret, K.S.5
  • 90
    • 0033637703 scopus 로고    scopus 로고
    • Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription
    • Shang Y., Hu X., DiRenzo J., Lazar M.A., Brown M. Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription. Cell 2000, 103:843-852.
    • (2000) Cell , vol.103 , pp. 843-852
    • Shang, Y.1    Hu, X.2    DiRenzo, J.3    Lazar, M.A.4    Brown, M.5
  • 93
    • 11144332565 scopus 로고    scopus 로고
    • Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
    • Shi Y., Lan F., Matson C., Mulligan P., Whetstine J.R., Cole P.A., Casero R.A., Shi Y. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 2004, 119:941-953. 10.1016/j.cell.2004.12.012.
    • (2004) Cell , vol.119 , pp. 941-953
    • Shi, Y.1    Lan, F.2    Matson, C.3    Mulligan, P.4    Whetstine, J.R.5    Cole, P.A.6    Casero, R.A.7    Shi, Y.8
  • 94
    • 79956291600 scopus 로고    scopus 로고
    • Histone demethylase JMJD2B coordinates H3K4/H3K9 methylation and promotes hormonally responsive breast, carcinogenesis
    • U S A
    • Shi, L., Sun, L., Li, Q., Liang, J., Yu, W., Yi, X., Yang, X., Li, Y., Han, X., Zhang, Y. et al. 2011. Histone demethylase JMJD2B coordinates H3K4/H3K9 methylation and promotes hormonally responsive breast, carcinogenesis. Proc Natl Acad Sci U S A, 108, 7541-7546. doi: doi:10.1073/pnas.1017374108.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 7541-7546
    • Shi, L.1    Sun, L.2    Li, Q.3    Liang, J.4    Yu, W.5    Yi, X.6    Yang, X.7    Li, Y.8    Han, X.9    Zhang, Y.10
  • 95
    • 77956648493 scopus 로고    scopus 로고
    • Pioneer factors in embryonic stem cells and differentiation
    • Smale S.T. Pioneer factors in embryonic stem cells and differentiation. Current Opinion in Genetics & Development 2010, 20:519-526. 10.1016/j.gde.2010.06.010.
    • (2010) Current Opinion in Genetics & Development , vol.20 , pp. 519-526
    • Smale, S.T.1
  • 96
    • 59349115177 scopus 로고    scopus 로고
    • Chemical mechanisms of histone lysine and arginine modifications
    • Smith B.C., Denu J.M. Chemical mechanisms of histone lysine and arginine modifications. Biochimica Et Biophysica Acta 2009, 1789:45-57. 10.1016/j.bbagrm.2008.06.005.
    • (2009) Biochimica Et Biophysica Acta , vol.1789 , pp. 45-57
    • Smith, B.C.1    Denu, J.M.2
  • 98
    • 0034663606 scopus 로고    scopus 로고
    • DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure
    • Staynov D.Z. DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure. Nucleic Acids Research 2000, 28:3092-3099.
    • (2000) Nucleic Acids Research , vol.28 , pp. 3092-3099
    • Staynov, D.Z.1
  • 101
    • 84871995408 scopus 로고    scopus 로고
    • GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility
    • Theodorou V., Stark R., Menon S., Carroll J.S. GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility. Genome Research 2012, 10.1101/gr.139469.112.
    • (2012) Genome Research
    • Theodorou, V.1    Stark, R.2    Menon, S.3    Carroll, J.S.4
  • 105
    • 24044540381 scopus 로고    scopus 로고
    • Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking
    • Wang Q., Carroll J.S., Brown M. Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking. Molecular Cell 2005, 19:631-642. 10.1016/j.molcel.2005.07.018.
    • (2005) Molecular Cell , vol.19 , pp. 631-642
    • Wang, Q.1    Carroll, J.S.2    Brown, M.3
  • 106
    • 67650758019 scopus 로고    scopus 로고
    • Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
    • Wang Q., Li W., Zhang Y., Yuan X., Xu K., Yu J., Chen Z., Beroukhim R., Wang H., Lupien M., et al. Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer. Cell 2009, 138:245-256. 10.1016/j.cell.2009.04.056.
    • (2009) Cell , vol.138 , pp. 245-256
    • Wang, Q.1    Li, W.2    Zhang, Y.3    Yuan, X.4    Xu, K.5    Yu, J.6    Chen, Z.7    Beroukhim, R.8    Wang, H.9    Lupien, M.10
  • 109
    • 0024296557 scopus 로고
    • Compilation of transcription regulating proteins
    • Wingender E. Compilation of transcription regulating proteins. Nucleic Acids Research 1988, 16:1879-1902.
    • (1988) Nucleic Acids Research , vol.16 , pp. 1879-1902
    • Wingender, E.1
  • 110
    • 77749323471 scopus 로고    scopus 로고
    • Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells
    • Wright J.B., Brown S.J., Cole M.D. Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells. Molecular and Cellular Biology 2010, 30:1411-1420. 10.1128/MCB.01384-09.
    • (2010) Molecular and Cellular Biology , vol.30 , pp. 1411-1420
    • Wright, J.B.1    Brown, S.J.2    Cole, M.D.3
  • 111
    • 84859585596 scopus 로고    scopus 로고
    • Histone H3R17me2a mark recruits human RNA polymerase-associated factor 1 complex to activate transcription
    • Wu J., Xu W. Histone H3R17me2a mark recruits human RNA polymerase-associated factor 1 complex to activate transcription. Proceedings of the National Academy of Sciences of the United States of America 2012, 109:5675-5680. 10.1073/pnas.1114905109.
    • (2012) Proceedings of the National Academy of Sciences of the United States of America , vol.109 , pp. 5675-5680
    • Wu, J.1    Xu, W.2
  • 112
    • 58249086425 scopus 로고    scopus 로고
    • Understanding the words of chromatin regulation
    • Wu J.I., Lessard J., Crabtree G.R. Understanding the words of chromatin regulation. Cell 2009, 136:200-206. 10.1016/j.cell.2009.01.009.
    • (2009) Cell , vol.136 , pp. 200-206
    • Wu, J.I.1    Lessard, J.2    Crabtree, G.R.3
  • 114
    • 79952944310 scopus 로고    scopus 로고
    • Structure and mechanisms of lysine methylation recognition by the chromodomain in gene transcription
    • Yap K.L., Zhou M.-M. Structure and mechanisms of lysine methylation recognition by the chromodomain in gene transcription. Biochemistry 2011, 50:1966-1980. 10.1021/bi101885m.
    • (2011) Biochemistry , vol.50 , pp. 1966-1980
    • Yap, K.L.1    Zhou, M.-M.2
  • 115
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: establishing competence for gene expression
    • Zaret K.S., Carroll J.S. Pioneer transcription factors: establishing competence for gene expression. Genes & Development 2011, 25:2227-2241. 10.1101/gad.176826.111.
    • (2011) Genes & Development , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2
  • 116
    • 84864624041 scopus 로고    scopus 로고
    • Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus
    • Zhang X., Cowper-Sal Lari R., Bailey S.D., Moore J.H., Lupien M. Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus. Genome Research 2012, 22:1437-1446. 10.1101/gr.135665.111.
    • (2012) Genome Research , vol.22 , pp. 1437-1446
    • Zhang, X.1    Cowper-Sal Lari, R.2    Bailey, S.D.3    Moore, J.H.4    Lupien, M.5
  • 118
    • 82455188015 scopus 로고    scopus 로고
    • Oestrogen receptor-co-factor-chromatin specificity in the transcriptional regulation of breast cancer
    • Zwart W., Theodorou V., Kok M., Canisius S., Linn S., Carroll J.S. Oestrogen receptor-co-factor-chromatin specificity in the transcriptional regulation of breast cancer. The EMBO Journal 2011, 30:4764-4776. 10.1038/emboj.2011.368.
    • (2011) The EMBO Journal , vol.30 , pp. 4764-4776
    • Zwart, W.1    Theodorou, V.2    Kok, M.3    Canisius, S.4    Linn, S.5    Carroll, J.S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.