-
1
-
-
84860841594
-
Epigenomic enhancer profiling defines a signature of colon cancer
-
Akhtar-Zaidi B., Cowper-Sal Lari R., Corradin O., Saiakhova A., Bartels C.F., Balasubramanian D., Myeroff L., Lutterbaugh J., Jarrar A., Kalady M.F., et al. Epigenomic enhancer profiling defines a signature of colon cancer. Science (New York, NY) 2012, 336:736-739. 10.1126/science.1217277.
-
(2012)
Science (New York, NY)
, vol.336
, pp. 736-739
-
-
Akhtar-Zaidi, B.1
Cowper-Sal Lari, R.2
Corradin, O.3
Saiakhova, A.4
Bartels, C.F.5
Balasubramanian, D.6
Myeroff, L.7
Lutterbaugh, J.8
Jarrar, A.9
Kalady, M.F.10
-
2
-
-
79952755547
-
CARM1 is an important determinant of ERα-dependent breast cancer cell differentiation and proliferation in breast cancer cells
-
Al-Dhaheri M., Wu J., Skliris G.P., Li J., Higashimato K., Wang Y., White K.P., Lambert P., Zhu Y., Murphy L., et al. CARM1 is an important determinant of ERα-dependent breast cancer cell differentiation and proliferation in breast cancer cells. Cancer Research 2011, 71:2118-2128. 10.1158/0008-5472.CAN-10-2426.
-
(2011)
Cancer Research
, vol.71
, pp. 2118-2128
-
-
Al-Dhaheri, M.1
Wu, J.2
Skliris, G.P.3
Li, J.4
Higashimato, K.5
Wang, Y.6
White, K.P.7
Lambert, P.8
Zhu, Y.9
Murphy, L.10
-
3
-
-
44849142755
-
Estrogen receptor regulation of carbonic anhydrase XII through a distal enhancer in breast cancer
-
Barnett D.H., Sheng S., Charn T.H., Waheed A., Sly W.S., Lin C.-Y., Liu E.T., Katzenellenbogen B.S. Estrogen receptor regulation of carbonic anhydrase XII through a distal enhancer in breast cancer. Cancer Research 2008, 68:3505-3515. 10.1158/0008-5472.CAN-07-6151.
-
(2008)
Cancer Research
, vol.68
, pp. 3505-3515
-
-
Barnett, D.H.1
Sheng, S.2
Charn, T.H.3
Waheed, A.4
Sly, W.S.5
Lin, C.-Y.6
Liu, E.T.7
Katzenellenbogen, B.S.8
-
4
-
-
80053144962
-
A decade of exploring the cancer epigenome - biological and translational implications
-
Baylin S.B., Jones P.A. A decade of exploring the cancer epigenome - biological and translational implications. Nature Reviews Cancer 2011, 11:726-734. 10.1038/nrc3130.
-
(2011)
Nature Reviews Cancer
, vol.11
, pp. 726-734
-
-
Baylin, S.B.1
Jones, P.A.2
-
5
-
-
79960563344
-
Determinants and dynamics of genome accessibility
-
Bell O., Tiwari V.K., Thomä N.H., Schübeler D. Determinants and dynamics of genome accessibility. Nature Reviews Genetics 2011, 12:554-564. 10.1038/nrg3017.
-
(2011)
Nature Reviews Genetics
, vol.12
, pp. 554-564
-
-
Bell, O.1
Tiwari, V.K.2
Thomä, N.H.3
Schübeler, D.4
-
6
-
-
33746219660
-
The design of transcription-factor binding sites is affected by combinatorial regulation
-
Bilu Y., Barkai N. The design of transcription-factor binding sites is affected by combinatorial regulation. Genome Biology 2005, 6:R103. 10.1186/gb-2005-6-12-r103.
-
(2005)
Genome Biology
, vol.6
-
-
Bilu, Y.1
Barkai, N.2
-
7
-
-
84869009900
-
Nucleosomal elements that control the topography of the barrier to transcription
-
Bintu L., Ishibashi T., Dangkulwanich M., Wu Y.-Y., Lubkowska L., Kashlev M., Bustamante C. Nucleosomal elements that control the topography of the barrier to transcription. Cell 2012, 151:738-749. 10.1016/j.cell.2012.10.009.
-
(2012)
Cell
, vol.151
, pp. 738-749
-
-
Bintu, L.1
Ishibashi, T.2
Dangkulwanich, M.3
Wu, Y.-Y.4
Lubkowska, L.5
Kashlev, M.6
Bustamante, C.7
-
8
-
-
84871756139
-
A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor α target genes
-
Bonneville R., Jin V.X. A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor α target genes. Bioinformatics (Oxford, England) 2012, 10.1093/bioinformatics/bts639.
-
(2012)
Bioinformatics (Oxford, England)
-
-
Bonneville, R.1
Jin, V.X.2
-
9
-
-
2542463869
-
Genome-wide identification of high-affinity estrogen response elements in human and mouse
-
Bourdeau V. Genome-wide identification of high-affinity estrogen response elements in human and mouse. Molecular Endocrinology (Baltimore, Md.) 2004, 18:1411-1427. 10.1210/me.2003-0441.
-
(2004)
Molecular Endocrinology (Baltimore, Md.)
, vol.18
, pp. 1411-1427
-
-
Bourdeau, V.1
-
10
-
-
46849122491
-
E2-mediated cathepsin D (CTSD) activation involves looping of distal enhancer elements
-
Bretschneider N., Kangaspeska S., Seifert M., Reid G., Gannon F., Denger S. E2-mediated cathepsin D (CTSD) activation involves looping of distal enhancer elements. Molecular Oncology 2008, 2:182-190. 10.1016/j.molonc.2008.05.004.
-
(2008)
Molecular Oncology
, vol.2
, pp. 182-190
-
-
Bretschneider, N.1
Kangaspeska, S.2
Seifert, M.3
Reid, G.4
Gannon, F.5
Denger, S.6
-
11
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
Cancer Genome Atlas Network Comprehensive molecular portraits of human breast tumours. Nature 2012, 490:61-70. 10.1038/nature11412.
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
Cancer Genome Atlas Network1
-
12
-
-
22144486551
-
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
-
Carroll J.S., Liu X.S., Brodsky A.S., Li W., Meyer C.A., Szary A.J., Eeckhoute J., Shao W., Hestermann E.V., Geistlinger T.R., et al. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell 2005, 122:33-43. 10.1016/j.cell.2005.05.008.
-
(2005)
Cell
, vol.122
, pp. 33-43
-
-
Carroll, J.S.1
Liu, X.S.2
Brodsky, A.S.3
Li, W.4
Meyer, C.A.5
Szary, A.J.6
Eeckhoute, J.7
Shao, W.8
Hestermann, E.V.9
Geistlinger, T.R.10
-
13
-
-
33750442923
-
Genome-wide analysis of estrogen receptor binding sites
-
Carroll J.S., Meyer C.A., Song J., Li W., Geistlinger T.R., Eeckhoute J., Brodsky A.S., Keeton E.K., Fertuck K.C., Hall G.F., et al. Genome-wide analysis of estrogen receptor binding sites. Nature Genetics 2006, 38:1289-1297. 10.1038/ng1901.
-
(2006)
Nature Genetics
, vol.38
, pp. 1289-1297
-
-
Carroll, J.S.1
Meyer, C.A.2
Song, J.3
Li, W.4
Geistlinger, T.R.5
Eeckhoute, J.6
Brodsky, A.S.7
Keeton, E.K.8
Fertuck, K.C.9
Hall, G.F.10
-
14
-
-
0036184236
-
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
-
Cirillo L.A., Lin F.R., Cuesta I., Friedman D., Jarnik M., Zaret K.S. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Molecular Cell 2002, 9:279-289.
-
(2002)
Molecular Cell
, vol.9
, pp. 279-289
-
-
Cirillo, L.A.1
Lin, F.R.2
Cuesta, I.3
Friedman, D.4
Jarnik, M.5
Zaret, K.S.6
-
15
-
-
77954855829
-
Non-coding RNAs: Meet thy masters
-
Costa F.F. Non-coding RNAs: Meet thy masters. BioEssays 2010, 32:599-608. 10.1002/bies.200900112.
-
(2010)
BioEssays
, vol.32
, pp. 599-608
-
-
Costa, F.F.1
-
16
-
-
84868198825
-
Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression
-
Cowper-Sal Lari R., Zhang X., Wright J.B., Bailey S.D., Cole M.D., Eeckhoute J., Moore J.H., Lupien M. Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression. Nature Genetics 2012, 10.1038/ng.2416.
-
(2012)
Nature Genetics
-
-
Cowper-Sal Lari, R.1
Zhang, X.2
Wright, J.B.3
Bailey, S.D.4
Cole, M.D.5
Eeckhoute, J.6
Moore, J.H.7
Lupien, M.8
-
17
-
-
84863621527
-
Cancer epigenetics: from mechanism to therapy
-
Dawson M.A., Kouzarides T. Cancer epigenetics: from mechanism to therapy. Cell 2012, 150:12-27. 10.1016/j.cell.2012.06.013.
-
(2012)
Cell
, vol.150
, pp. 12-27
-
-
Dawson, M.A.1
Kouzarides, T.2
-
18
-
-
0033800796
-
BRG-1 is recruited to estrogen-responsive promoters and cooperates with factors involved in histone acetylation
-
DiRenzo J., Shang Y., Phelan M., Sif S., Myers M., Kingston R., Brown M. BRG-1 is recruited to estrogen-responsive promoters and cooperates with factors involved in histone acetylation. Molecular and Cellular Biology 2000, 20:7541-7549.
-
(2000)
Molecular and Cellular Biology
, vol.20
, pp. 7541-7549
-
-
DiRenzo, J.1
Shang, Y.2
Phelan, M.3
Sif, S.4
Myers, M.5
Kingston, R.6
Brown, M.7
-
19
-
-
34447130861
-
Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer
-
Eeckhoute J., Keeton E.K., Lupien M., Krum S.A., Carroll J.S., Brown M. Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer. Cancer Research 2007, 67:6477-6483. 10.1158/0008-5472.CAN-07-0746.
-
(2007)
Cancer Research
, vol.67
, pp. 6477-6483
-
-
Eeckhoute, J.1
Keeton, E.K.2
Lupien, M.3
Krum, S.A.4
Carroll, J.S.5
Brown, M.6
-
20
-
-
61849119137
-
Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers
-
Eeckhoute J., Lupien M., Meyer C.A., Verzi M.P., Shivdasani R.A., Liu X.S., Brown M. Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. Genome Research 2009, 19:372-380. 10.1101/gr.084582.108.
-
(2009)
Genome Research
, vol.19
, pp. 372-380
-
-
Eeckhoute, J.1
Lupien, M.2
Meyer, C.A.3
Verzi, M.P.4
Shivdasani, R.A.5
Liu, X.S.6
Brown, M.7
-
21
-
-
84862584058
-
Whole-genome analysis informs breast cancer response to aromatase inhibition
-
Ellis M.J., Ding L., Shen D., Luo J., Suman V.J., Wallis J.W., Van Tine B.A., Hoog J., Goiffon R.J., Goldstein T.C., et al. Whole-genome analysis informs breast cancer response to aromatase inhibition. Nature 2012, 486:353-360. 10.1038/nature11143.
-
(2012)
Nature
, vol.486
, pp. 353-360
-
-
Ellis, M.J.1
Ding, L.2
Shen, D.3
Luo, J.4
Suman, V.J.5
Wallis, J.W.6
Van Tine, B.A.7
Hoog, J.8
Goiffon, R.J.9
Goldstein, T.C.10
-
22
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
ENCODE Project Consortium, Bernstein B.E., Birney E., Dunham I., Green E.D., Gunter C., Snyder M. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489:57-74. 10.1038/nature11247.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
Snyder, M.6
-
23
-
-
78650747491
-
Discovery and characterization of chromatin states for systematic annotation of the human genome
-
Ernst J., Kellis M. Discovery and characterization of chromatin states for systematic annotation of the human genome. Nature Biotechnology 2010, 28:817-825. 10.1038/nbt.1662.
-
(2010)
Nature Biotechnology
, vol.28
, pp. 817-825
-
-
Ernst, J.1
Kellis, M.2
-
24
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst J., Kheradpour P., Mikkelsen T.S., Shoresh N., Ward L.D., Epstein C.B., Zhang X., Wang L., Issner R., Coyne M., et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 2011, 473:43-49. 10.1038/nature09906.
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
-
25
-
-
78049414227
-
Epigenetic reprogramming in plant and animal development
-
Feng S., Jacobsen S.E., Reik W. Epigenetic reprogramming in plant and animal development. Science (New York, NY) 2010, 330:622-627. 10.1126/science.1190614.
-
(2010)
Science (New York, NY)
, vol.330
, pp. 622-627
-
-
Feng, S.1
Jacobsen, S.E.2
Reik, W.3
-
26
-
-
77954853506
-
Research resource: expression profiling reveals unexpected targets and functions of the human steroid receptor RNA activator (SRA) gene
-
Foulds C.E., Tsimelzon A., Long W., Le A., Tsai S.Y., Tsai M.-J., O'Malley B.W. Research resource: expression profiling reveals unexpected targets and functions of the human steroid receptor RNA activator (SRA) gene. Molecular Endocrinology (Baltimore, Md.) 2010, 24:1090-1105. 10.1210/me.2009-0427.
-
(2010)
Molecular Endocrinology (Baltimore, Md.)
, vol.24
, pp. 1090-1105
-
-
Foulds, C.E.1
Tsimelzon, A.2
Long, W.3
Le, A.4
Tsai, S.Y.5
Tsai, M.-J.6
O'Malley, B.W.7
-
27
-
-
70449103609
-
An oestrogen-receptor-alpha-bound human chromatin interactome
-
Fullwood M.J., Liu M.H., Pan Y.F., Liu J., Xu H., Mohamed Y.B., Orlov Y.L., Velkov S., Ho A., Mei P.H., et al. An oestrogen-receptor-alpha-bound human chromatin interactome. Nature 2009, 462:58-64. 10.1038/nature08497.
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
Orlov, Y.L.7
Velkov, S.8
Ho, A.9
Mei, P.H.10
-
29
-
-
33846690407
-
Histone methylation-dependent mechanisms impose ligand dependency for gene activation by nuclear receptors
-
Garcia-Bassets I., Kwon Y.-S., Telese F., Prefontaine G.G., Hutt K.R., Cheng C.S., Ju B.-G., Ohgi K.A., Wang J., Escoubet-Lozach L., et al. Histone methylation-dependent mechanisms impose ligand dependency for gene activation by nuclear receptors. Cell 2007, 128:505-518. 10.1016/j.cell.2006.12.038.
-
(2007)
Cell
, vol.128
, pp. 505-518
-
-
Garcia-Bassets, I.1
Kwon, Y.-S.2
Telese, F.3
Prefontaine, G.G.4
Hutt, K.R.5
Cheng, C.S.6
Ju, B.-G.7
Ohgi, K.A.8
Wang, J.9
Escoubet-Lozach, L.10
-
30
-
-
84868324642
-
Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
-
Gertz J., Reddy T.E., Varley K.E., Garabedian M.J., Myers R.M. Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner. Genome Research 2012, 10.1101/gr.135681.111.
-
(2012)
Genome Research
-
-
Gertz, J.1
Reddy, T.E.2
Varley, K.E.3
Garabedian, M.J.4
Myers, R.M.5
-
31
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta R.A., Shah N., Wang K.C., Kim J., Horlings H.M., Wong D.J., Tsai M.-C., Hung T., Argani P., Rinn J.L., et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010, 464:1071-1076. 10.1038/nature08975.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.-C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
-
32
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M., Amit I., Garber M., French C., Lin M.F., Feldser D., Huarte M., Zuk O., Carey B.W., Cassady J.P., et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009, 458:223-227. 10.1038/nature07672.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
-
33
-
-
0036185782
-
Allosteric regulation of estrogen receptor structure, function, and coactivator recruitment by different estrogen response elements
-
Hall J.M., McDonnell D.P., Korach K.S. Allosteric regulation of estrogen receptor structure, function, and coactivator recruitment by different estrogen response elements. Molecular Endocrinology (Baltimore, Md.) 2002, 16:469-486.
-
(2002)
Molecular Endocrinology (Baltimore, Md.)
, vol.16
, pp. 469-486
-
-
Hall, J.M.1
McDonnell, D.P.2
Korach, K.S.3
-
34
-
-
79952539053
-
ATP-dependent chromatin remodeling: genetics, genomics and mechanisms
-
Hargreaves D.C., Crabtree G.R. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Cell Research 2011, 21:396-420. 10.1038/cr.2011.32.
-
(2011)
Cell Research
, vol.21
, pp. 396-420
-
-
Hargreaves, D.C.1
Crabtree, G.R.2
-
35
-
-
77950262538
-
Nucleosome dynamics define transcriptional enhancers
-
343-U101
-
He H.H., Meyer C.A., Shin H., Bailey S.T., Wei G., Wang Q., Zhang Y., Xu K., Ni M., Lupien M., et al. Nucleosome dynamics define transcriptional enhancers. Nature Genetics 2010, 42. 343-U101. 10.1038/ng.545.
-
(2010)
Nature Genetics
, vol.42
-
-
He, H.H.1
Meyer, C.A.2
Shin, H.3
Bailey, S.T.4
Wei, G.5
Wang, Q.6
Zhang, Y.7
Xu, K.8
Ni, M.9
Lupien, M.10
-
36
-
-
84861889354
-
Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics
-
He H.H., Meyer C.A., Chen M.W., Jordan V.C., Brown M., Liu X.S. Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics. Genome Research 2012, 22:1015-1025. 10.1101/gr.133280.111.
-
(2012)
Genome Research
, vol.22
, pp. 1015-1025
-
-
He, H.H.1
Meyer, C.A.2
Chen, M.W.3
Jordan, V.C.4
Brown, M.5
Liu, X.S.6
-
37
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman N.D., Stuart R.K., Hon G., Fu Y., Ching C.W., Hawkins R.D., Barrera L.O., Van Calcar S., Qu C., Ching K.A., et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nature Genetics 2007, 39:311-318. 10.1038/ng1966.
-
(2007)
Nature Genetics
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
-
38
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman N.D., Hon G.C., Hawkins R.D., Kheradpour P., Stark A., Harp L.F., Ye Z., Lee L.K., Stuart R.K., Ching C.W., et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 2009, 459:108-112. 10.1038/nature07829.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
39
-
-
80052805267
-
Histone modification: cause or cog?
-
Henikoff S., Shilatifard A. Histone modification: cause or cog?. Trends in Genetics: TIG 2011, 27:389-396. 10.1016/j.tig.2011.06.006.
-
(2011)
Trends in Genetics: TIG
, vol.27
, pp. 389-396
-
-
Henikoff, S.1
Shilatifard, A.2
-
40
-
-
84863393402
-
Breast Cancer Special Feature: transducin-like enhancer protein 1 mediates estrogen receptor binding and transcriptional activity in breast cancer cells
-
Holmes K.A., Hurtado A., Brown G.D., Launchbury R., Ross-Innes C.S., Hadfield J., Odom D.T., Carroll J.S. Breast Cancer Special Feature: transducin-like enhancer protein 1 mediates estrogen receptor binding and transcriptional activity in breast cancer cells. Proceedings of the National Academy of Sciences of the United States of America 2011, 10.1073/pnas.1018863108.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
-
-
Holmes, K.A.1
Hurtado, A.2
Brown, G.D.3
Launchbury, R.4
Ross-Innes, C.S.5
Hadfield, J.6
Odom, D.T.7
Carroll, J.S.8
-
41
-
-
78651250284
-
FOXA1 is a key determinant of estrogen receptor function and endocrine response
-
Hurtado A., Holmes K.A., Ross-Innes C.S., Schmidt D., Carroll J.S. FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nature Genetics 2010, 43:27-33. 10.1038/ng.730.
-
(2010)
Nature Genetics
, vol.43
, pp. 27-33
-
-
Hurtado, A.1
Holmes, K.A.2
Ross-Innes, C.S.3
Schmidt, D.4
Carroll, J.S.5
-
42
-
-
0035839136
-
Translating the histone code
-
Jenuwein T., Allis C.D. Translating the histone code. Science 2001, 293:1074-1080. 10.1126/science.1063127.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
43
-
-
84863986133
-
Functions of DNA methylation: islands, start sites, gene bodies and beyond
-
Jones P.A. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nature Reviews Genetics 2012, 13:484-492. 10.1038/nrg3230.
-
(2012)
Nature Reviews Genetics
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
44
-
-
79957633045
-
Expanding the paradigm for estrogen receptor binding and transcriptional activation
-
Joshi S.R., Ghattamaneni R.B., Scovell W.M. Expanding the paradigm for estrogen receptor binding and transcriptional activation. Molecular Endocrinology (Baltimore, Md.) 2011, 25:980-994. 10.1210/me.2010-0302.
-
(2011)
Molecular Endocrinology (Baltimore, Md.)
, vol.25
, pp. 980-994
-
-
Joshi, S.R.1
Ghattamaneni, R.B.2
Scovell, W.M.3
-
45
-
-
84869046644
-
Nucleosome dynamics: HMGB1 relaxes canonical nucleosome structure to facilitate estrogen receptor binding
-
Joshi S.R., Sarpong Y.C., Peterson R.C., Scovell W.M. Nucleosome dynamics: HMGB1 relaxes canonical nucleosome structure to facilitate estrogen receptor binding. Nucleic Acids Research 2012, 10.1093/nar/gks815.
-
(2012)
Nucleic Acids Research
-
-
Joshi, S.R.1
Sarpong, Y.C.2
Peterson, R.C.3
Scovell, W.M.4
-
47
-
-
40449104358
-
Transient cyclical methylation of promoter DNA
-
Kangaspeska S., Stride B., Métivier R., Polycarpou-Schwarz M., Ibberson D., Carmouche R.P., Benes V., Gannon F., Reid G. Transient cyclical methylation of promoter DNA. Nature 2008, 452:112-115. 10.1038/nature06640.
-
(2008)
Nature
, vol.452
, pp. 112-115
-
-
Kangaspeska, S.1
Stride, B.2
Métivier, R.3
Polycarpou-Schwarz, M.4
Ibberson, D.5
Carmouche, R.P.6
Benes, V.7
Gannon, F.8
Reid, G.9
-
48
-
-
74049155913
-
Enzymatic activity is required for the in vivo functions of CARM1
-
Kim D., Lee J., Cheng D., Li J., Carter C., Richie E., Bedford M.T. Enzymatic activity is required for the in vivo functions of CARM1. The Journal of Biological Chemistry 2010, 285:1147-1152. 10.1074/jbc.M109.035865.
-
(2010)
The Journal of Biological Chemistry
, vol.285
, pp. 1147-1152
-
-
Kim, D.1
Lee, J.2
Cheng, D.3
Li, J.4
Carter, C.5
Richie, E.6
Bedford, M.T.7
-
49
-
-
0023034983
-
An estrogen-responsive element derived from the 5' flanking region of the Xenopus vitellogenin A2 gene functions in transfected human cells
-
Klein-Hitpaß L., Schorpp M., Wagner U., Ryffel G.U. An estrogen-responsive element derived from the 5' flanking region of the Xenopus vitellogenin A2 gene functions in transfected human cells. Cell 1986, 46:1053-1061. 10.1016/0092-8674(86)90705-1.
-
(1986)
Cell
, vol.46
, pp. 1053-1061
-
-
Klein-Hitpaß, L.1
Schorpp, M.2
Wagner, U.3
Ryffel, G.U.4
-
50
-
-
80052398200
-
Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state
-
Kong S.L., Li G., Loh S.L., Sung W.-K., Liu E.T. Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state. Molecular Systems Biology 2011, 7:526. 10.1038/msb.2011.59.
-
(2011)
Molecular Systems Biology
, vol.7
, pp. 526
-
-
Kong, S.L.1
Li, G.2
Loh, S.L.3
Sung, W.-K.4
Liu, E.T.5
-
51
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides T. Chromatin modifications and their function. Cell 2007, 128:693-705. 10.1016/j.cell.2007.02.005.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
52
-
-
0032006563
-
P300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation
-
Kraus W.L., Kadonaga J.T. P300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation. Genes & Development 1998, 12:331-342.
-
(1998)
Genes & Development
, vol.12
, pp. 331-342
-
-
Kraus, W.L.1
Kadonaga, J.T.2
-
53
-
-
55049107572
-
Unique ERalpha cistromes control cell type-specific gene regulation
-
Krum S.A., Miranda-Carboni G.A., Lupien M., Eeckhoute J., Carroll J.S., Brown M. Unique ERalpha cistromes control cell type-specific gene regulation. Molecular Endocrinology (Baltimore, Md.) 2008, 22:2393-2406. 10.1210/me.2008-0100.
-
(2008)
Molecular Endocrinology (Baltimore, Md.)
, vol.22
, pp. 2393-2406
-
-
Krum, S.A.1
Miranda-Carboni, G.A.2
Lupien, M.3
Eeckhoute, J.4
Carroll, J.S.5
Brown, M.6
-
54
-
-
0023808861
-
The estrogen receptor binds tightly to its responsive element as a ligand-induced homodimer
-
Kumar V., Chambon P. The estrogen receptor binds tightly to its responsive element as a ligand-induced homodimer. Cell 1988, 55:145-156.
-
(1988)
Cell
, vol.55
, pp. 145-156
-
-
Kumar, V.1
Chambon, P.2
-
55
-
-
0023663885
-
Functional domains of the human estrogen receptor
-
Kumar V., Green S., Stack G., Berry M., Jin J.R., Chambon P. Functional domains of the human estrogen receptor. Cell 1987, 51:941-951.
-
(1987)
Cell
, vol.51
, pp. 941-951
-
-
Kumar, V.1
Green, S.2
Stack, G.3
Berry, M.4
Jin, J.R.5
Chambon, P.6
-
56
-
-
23844485897
-
From the cover: location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response
-
Laganière J., Deblois G., Lefebvre C., Bataille A.R., Robert F., Giguère V. From the cover: location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:11651-11656. 10.1073/pnas.0505575102.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 11651-11656
-
-
Laganière, J.1
Deblois, G.2
Lefebvre, C.3
Bataille, A.R.4
Robert, F.5
Giguère, V.6
-
57
-
-
84866120986
-
Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages
-
Lan X., Witt H., Katsumura K., Ye Z., Wang Q., Bresnick E.H., Farnham P.J., Jin V.X. Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages. Nucleic Acids Research 2012, 40:7690-7704. 10.1093/nar/gks501.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 7690-7704
-
-
Lan, X.1
Witt, H.2
Katsumura, K.3
Ye, Z.4
Wang, Q.5
Bresnick, E.H.6
Farnham, P.J.7
Jin, V.X.8
-
58
-
-
0033515637
-
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
-
Lanz R.B., McKenna N.J., Onate S.A., Albrecht U., Wong J., Tsai S.Y., Tsai M.J., O'Malley B.W. A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. Cell 1999, 97:17-27.
-
(1999)
Cell
, vol.97
, pp. 17-27
-
-
Lanz, R.B.1
McKenna, N.J.2
Onate, S.A.3
Albrecht, U.4
Wong, J.5
Tsai, S.Y.6
Tsai, M.J.7
O'Malley, B.W.8
-
59
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
Li G., Ruan X., Auerbach R.K., Sandhu K.S., Zheng M., Wang P., Poh H.M., Goh Y., Lim J., Zhang J., et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 2012, 148:84-98. 10.1016/j.cell.2011.12.014.
-
(2012)
Cell
, vol.148
, pp. 84-98
-
-
Li, G.1
Ruan, X.2
Auerbach, R.K.3
Sandhu, K.S.4
Zheng, M.5
Wang, P.6
Poh, H.M.7
Goh, Y.8
Lim, J.9
Zhang, J.10
-
60
-
-
84871539869
-
Foxa2 and H2A.Z mediate nucleosome depletion during embryonic stem cell differentiation
-
Li Z., Gadue P., Chen K., Jiao Y., Tuteja G., Schug J., Li W., Kaestner K.H. Foxa2 and H2A.Z mediate nucleosome depletion during embryonic stem cell differentiation. Cell 2012, 151:1608-1616. 10.1016/j.cell.2012.11.018.
-
(2012)
Cell
, vol.151
, pp. 1608-1616
-
-
Li, Z.1
Gadue, P.2
Chen, K.3
Jiao, Y.4
Tuteja, G.5
Schug, J.6
Li, W.7
Kaestner, K.H.8
-
61
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E., van Berkum N.L., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B.R., Sabo P.J., Dorschner M.O., et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science (New York, NY) 2009, 326:289-293. 10.1126/science.1181369.
-
(2009)
Science (New York, NY)
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
62
-
-
34347345081
-
Whole-genome cartography of estrogen receptor alpha binding sites
-
Lin C.-Y., Vega V.B., Thomsen J.S., Zhang T., Kong S.L., Xie M., Chiu K.P., Lipovich L., Barnett D.H., Stossi F., et al. Whole-genome cartography of estrogen receptor alpha binding sites. PLoS Genetics 2007, 3:e87. 10.1371/journal.pgen.0030087.
-
(2007)
PLoS Genetics
, vol.3
-
-
Lin, C.-Y.1
Vega, V.B.2
Thomsen, J.S.3
Zhang, T.4
Kong, S.L.5
Xie, M.6
Chiu, K.P.7
Lipovich, L.8
Barnett, D.H.9
Stossi, F.10
-
63
-
-
2442494302
-
Recruitment of distinct chromatin-modifying complexes by tamoxifen-complexed estrogen receptor at natural target gene promoters in vivo
-
Liu X.-F., Bagchi M.K. Recruitment of distinct chromatin-modifying complexes by tamoxifen-complexed estrogen receptor at natural target gene promoters in vivo. The Journal of Biological Chemistry 2004, 279:15050-15058. 10.1074/jbc.M311932200.
-
(2004)
The Journal of Biological Chemistry
, vol.279
, pp. 15050-15058
-
-
Liu, X.-F.1
Bagchi, M.K.2
-
64
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8A resolution
-
Luger K., Mäder A.W., Richmond R.K., Sargent D.F., Richmond T.J. Crystal structure of the nucleosome core particle at 2.8A resolution. Nature 1997, 389:251-260. 10.1038/38444.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mäder, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
65
-
-
40849085514
-
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
-
Lupien M., Eeckhoute J., Meyer C.A., Wang Q., Zhang Y., Li W., Carroll J.S., Liu X.S., Brown M. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 2008, 132:958-970. 10.1016/j.cell.2008.01.018.
-
(2008)
Cell
, vol.132
, pp. 958-970
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.A.3
Wang, Q.4
Zhang, Y.5
Li, W.6
Carroll, J.S.7
Liu, X.S.8
Brown, M.9
-
66
-
-
67649208317
-
Coactivator function defines the active estrogen receptor alpha cistrome
-
Lupien M., Eeckhoute J., Meyer C.A., Krum S.A., Rhodes D.R., Liu X.S., Brown M. Coactivator function defines the active estrogen receptor alpha cistrome. Molecular and Cellular Biology 2009, 29:3413-3423. 10.1128/MCB.00020-09.
-
(2009)
Molecular and Cellular Biology
, vol.29
, pp. 3413-3423
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.A.3
Krum, S.A.4
Rhodes, D.R.5
Liu, X.S.6
Brown, M.7
-
67
-
-
77957673898
-
Growth factor stimulation induces a distinct ER(alpha) cistrome underlying breast cancer endocrine resistance
-
Lupien M., Meyer C.A., Bailey S.T., Eeckhoute J., Cook J., Westerling T., Zhang X., Carroll J.S., Rhodes D.R., Liu X.S., et al. Growth factor stimulation induces a distinct ER(alpha) cistrome underlying breast cancer endocrine resistance. Genes & Development 2010, 24:2219-2227. 10.1101/gad.1944810.
-
(2010)
Genes & Development
, vol.24
, pp. 2219-2227
-
-
Lupien, M.1
Meyer, C.A.2
Bailey, S.T.3
Eeckhoute, J.4
Cook, J.5
Westerling, T.6
Zhang, X.7
Carroll, J.S.8
Rhodes, D.R.9
Liu, X.S.10
-
68
-
-
81755160905
-
PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer
-
Magnani L., Ballantyne E.B., Zhang X., Lupien M. PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer. PLoS Genetics 2011, 7:e1002368. 10.1371/journal.pgen.1002368.
-
(2011)
PLoS Genetics
, vol.7
-
-
Magnani, L.1
Ballantyne, E.B.2
Zhang, X.3
Lupien, M.4
-
69
-
-
80054084614
-
Pioneer factors: directing transcriptional regulators within the chromatin environment
-
Magnani L., Eeckhoute J., Lupien M. Pioneer factors: directing transcriptional regulators within the chromatin environment. Trends in Genetics: TIG 2011, 27:465-474. 10.1016/j.tig.2011.07.002.
-
(2011)
Trends in Genetics: TIG
, vol.27
, pp. 465-474
-
-
Magnani, L.1
Eeckhoute, J.2
Lupien, M.3
-
70
-
-
84876204394
-
Genome-wide reprogramming of the chromatin landscape underlies endocrine therapy resistance in breast cancer
-
Magnani L., Stoeck A., Zhang X., Lanczky A., Mirabella A.C., Wang T.-L., Györffy B., Lupien M. Genome-wide reprogramming of the chromatin landscape underlies endocrine therapy resistance in breast cancer. Proceedings of the National Academy of Sciences of the United States of America 2013, 10.1073/pnas.1219992110.
-
(2013)
Proceedings of the National Academy of Sciences of the United States of America
-
-
Magnani, L.1
Stoeck, A.2
Zhang, X.3
Lanczky, A.4
Mirabella, A.C.5
Wang, T.-L.6
Györffy, B.7
Lupien, M.8
-
71
-
-
2642544592
-
Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
-
Métivier R., Penot G., Hübner M.R., Reid G., Brand H., Kos M., Gannon F. Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 2003, 115:751-763.
-
(2003)
Cell
, vol.115
, pp. 751-763
-
-
Métivier, R.1
Penot, G.2
Hübner, M.R.3
Reid, G.4
Brand, H.5
Kos, M.6
Gannon, F.7
-
72
-
-
40449123137
-
Cyclical DNA methylation of a transcriptionally active promoter
-
Métivier R., Gallais R., Tiffoche C., Le Péron C., Jurkowska R.Z., Carmouche R.P., Ibberson D., Barath P., Demay F., Reid G., et al. Cyclical DNA methylation of a transcriptionally active promoter. Nature 2008, 452:45-50. 10.1038/nature06544.
-
(2008)
Nature
, vol.452
, pp. 45-50
-
-
Métivier, R.1
Gallais, R.2
Tiffoche, C.3
Le Péron, C.4
Jurkowska, R.Z.5
Carmouche, R.P.6
Ibberson, D.7
Barath, P.8
Demay, F.9
Reid, G.10
-
73
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen T.S., Ku M., Jaffe D.B., Issac B., Lieberman E., Giannoukos G., Alvarez P., Brockman W., Kim T.-K., Koche R.P., et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007, 448:553-560. 10.1038/nature06008.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.-K.9
Koche, R.P.10
-
74
-
-
33744903415
-
Identification of the MLL2 Complex as a Coactivator for Estrogen Receptor
-
Mo R. Identification of the MLL2 Complex as a Coactivator for Estrogen Receptor. The Journal of Biological Chemistry 2006, 281:15714-15720. 10.1074/jbc.M513245200.
-
(2006)
The Journal of Biological Chemistry
, vol.281
, pp. 15714-15720
-
-
Mo, R.1
-
75
-
-
84865708757
-
An expansive human regulatory lexicon encoded in transcription factor footprints
-
Neph S., Vierstra J., Stergachis A.B., Reynolds A.P., Haugen E., Vernot B., Thurman R.E., John S., Sandstrom R., Johnson A.K., et al. An expansive human regulatory lexicon encoded in transcription factor footprints. Nature 2012, 489:83-90. 10.1038/nature11212.
-
(2012)
Nature
, vol.489
, pp. 83-90
-
-
Neph, S.1
Vierstra, J.2
Stergachis, A.B.3
Reynolds, A.P.4
Haugen, E.5
Vernot, B.6
Thurman, R.E.7
John, S.8
Sandstrom, R.9
Johnson, A.K.10
-
76
-
-
57749083496
-
Regulation of estrogen receptor-mediated long range transcription via evolutionarily conserved distal response elements
-
Pan Y.F., Wansa K.D.S.A., Liu M.H., Zhao B., Hong S.Z., Tan P.Y., Lim K.S., Bourque G., Liu E.T., Cheung E. Regulation of estrogen receptor-mediated long range transcription via evolutionarily conserved distal response elements. The Journal of Biological Chemistry 2008, 283:32977-32988. 10.1074/jbc.M802024200.
-
(2008)
The Journal of Biological Chemistry
, vol.283
, pp. 32977-32988
-
-
Pan, Y.F.1
Wansa, K.D.S.A.2
Liu, M.H.3
Zhao, B.4
Hong, S.Z.5
Tan, P.Y.6
Lim, K.S.7
Bourque, G.8
Liu, E.T.9
Cheung, E.10
-
77
-
-
38149045693
-
DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression
-
Perillo B., Ombra M.N., Bertoni A., Cuozzo C., Sacchetti S., Sasso A., Chiariotti L., Malorni A., Abbondanza C., Avvedimento E.V. DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression. Science (New York, NY) 2008, 319:202-206. 10.1126/science.1147674.
-
(2008)
Science (New York, NY)
, vol.319
, pp. 202-206
-
-
Perillo, B.1
Ombra, M.N.2
Bertoni, A.3
Cuozzo, C.4
Sacchetti, S.5
Sasso, A.6
Chiariotti, L.7
Malorni, A.8
Abbondanza, C.9
Avvedimento, E.V.10
-
78
-
-
68149180901
-
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer
-
Pomerantz M.M., Ahmadiyeh N., Jia L., Herman P., Verzi M.P., Doddapaneni H., Beckwith C.A., Chan J.A., Hills A., Davis M., et al. The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer. Nature Genetics 2009, 41:882-884. 10.1038/ng.403.
-
(2009)
Nature Genetics
, vol.41
, pp. 882-884
-
-
Pomerantz, M.M.1
Ahmadiyeh, N.2
Jia, L.3
Herman, P.4
Verzi, M.P.5
Doddapaneni, H.6
Beckwith, C.A.7
Chan, J.A.8
Hills, A.9
Davis, M.10
-
79
-
-
0037351881
-
Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling
-
Reid G., Hübner M.R., Métivier R., Brand H., Denger S., Manu D., Beaudouin J., Ellenberg J., Gannon F. Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling. Molecular Cell 2003, 11:695-707.
-
(2003)
Molecular Cell
, vol.11
, pp. 695-707
-
-
Reid, G.1
Hübner, M.R.2
Métivier, R.3
Brand, H.4
Denger, S.5
Manu, D.6
Beaudouin, J.7
Ellenberg, J.8
Gannon, F.9
-
80
-
-
84865550686
-
Estradiol receptors in breast cancer cells: associated co-factors as targets for new therapeutic approaches
-
Renoir J.-M. Estradiol receptors in breast cancer cells: associated co-factors as targets for new therapeutic approaches. Steroids 2012, 77:1249-1261. 10.1016/j.steroids.2012.07.019.
-
(2012)
Steroids
, vol.77
, pp. 1249-1261
-
-
Renoir, J.-M.1
-
81
-
-
79952384705
-
Cancer epigenetics reaches mainstream oncology
-
Rodríguez-Paredes M., Esteller M. Cancer epigenetics reaches mainstream oncology. Nature Medicine 2011, 17:330-339. 10.1038/nm.2305.
-
(2011)
Nature Medicine
, vol.17
, pp. 330-339
-
-
Rodríguez-Paredes, M.1
Esteller, M.2
-
82
-
-
84856008906
-
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
-
Ross-Innes C.S., Stark R., Teschendorff A.E., Holmes K.A., Ali H.R., Dunning M.J., Brown G.D., Gojis O., Ellis I.O., Green A.R., et al. Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature 2012, 481:389-393. 10.1038/nature10730.
-
(2012)
Nature
, vol.481
, pp. 389-393
-
-
Ross-Innes, C.S.1
Stark, R.2
Teschendorff, A.E.3
Holmes, K.A.4
Ali, H.R.5
Dunning, M.J.6
Brown, G.D.7
Gojis, O.8
Ellis, I.O.9
Green, A.R.10
-
83
-
-
79961170994
-
A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
-
Salmena L., Poliseno L., Tay Y., Kats L., Pandolfi P.P. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?. Cell 2011, 146:353-358. 10.1016/j.cell.2011.07.014.
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.P.5
-
84
-
-
70149105669
-
The role of human bromodomains in chromatin biology and gene transcription
-
Sanchez R., Zhou M.-M. The role of human bromodomains in chromatin biology and gene transcription. Current Opinion in Drug Discovery & Development 2009, 12:659-665.
-
(2009)
Current Opinion in Drug Discovery & Development
, vol.12
, pp. 659-665
-
-
Sanchez, R.1
Zhou, M.-M.2
-
85
-
-
0347125328
-
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
-
Sandelin A., Alkema W., Engström P., Wasserman W.W., Lenhard B. JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Research 2004, 32:D91-D94. 10.1093/nar/gkh012.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Sandelin, A.1
Alkema, W.2
Engström, P.3
Wasserman, W.W.4
Lenhard, B.5
-
86
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
Sanyal A., Lajoie B.R., Jain G., Dekker J. The long-range interaction landscape of gene promoters. Nature 2012, 489:109-113. 10.1038/nature11279.
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
87
-
-
36849074774
-
Dynamics and interplay of nuclear architecture, genome organization, and gene expression
-
Schneider R., Grosschedl R. Dynamics and interplay of nuclear architecture, genome organization, and gene expression. Genes & Development 2007, 21:3027-3043. 10.1101/gad.1604607.
-
(2007)
Genes & Development
, vol.21
, pp. 3027-3043
-
-
Schneider, R.1
Grosschedl, R.2
-
88
-
-
64349088929
-
Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA
-
Sekiya T., Muthurajan U.M., Luger K., Tulin A.V., Zaret K.S. Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA. Genes & Development 2009, 23:804-809. 10.1101/gad.1775509.
-
(2009)
Genes & Development
, vol.23
, pp. 804-809
-
-
Sekiya, T.1
Muthurajan, U.M.2
Luger, K.3
Tulin, A.V.4
Zaret, K.S.5
-
89
-
-
79953319002
-
Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
-
Sérandour A.A., Avner S., Percevault F., Demay F., Bizot M., Lucchetti-Miganeh C., Barloy-Hubler F., Brown M., Lupien M., Métivier R., et al. Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers. Genome Research 2011, 21:555-565. 10.1101/gr.111534.110.
-
(2011)
Genome Research
, vol.21
, pp. 555-565
-
-
Sérandour, A.A.1
Avner, S.2
Percevault, F.3
Demay, F.4
Bizot, M.5
Lucchetti-Miganeh, C.6
Barloy-Hubler, F.7
Brown, M.8
Lupien, M.9
Métivier, R.10
-
90
-
-
0033637703
-
Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription
-
Shang Y., Hu X., DiRenzo J., Lazar M.A., Brown M. Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription. Cell 2000, 103:843-852.
-
(2000)
Cell
, vol.103
, pp. 843-852
-
-
Shang, Y.1
Hu, X.2
DiRenzo, J.3
Lazar, M.A.4
Brown, M.5
-
92
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y., Yue F., McCleary D.F., Ye Z., Edsall L., Kuan S., Wagner U., Dixon J., Lee L., Lobanenkov V.V., et al. A map of the cis-regulatory sequences in the mouse genome. Nature 2012, 488:116-120. 10.1038/nature11243.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
-
93
-
-
11144332565
-
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
-
Shi Y., Lan F., Matson C., Mulligan P., Whetstine J.R., Cole P.A., Casero R.A., Shi Y. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 2004, 119:941-953. 10.1016/j.cell.2004.12.012.
-
(2004)
Cell
, vol.119
, pp. 941-953
-
-
Shi, Y.1
Lan, F.2
Matson, C.3
Mulligan, P.4
Whetstine, J.R.5
Cole, P.A.6
Casero, R.A.7
Shi, Y.8
-
94
-
-
79956291600
-
Histone demethylase JMJD2B coordinates H3K4/H3K9 methylation and promotes hormonally responsive breast, carcinogenesis
-
U S A
-
Shi, L., Sun, L., Li, Q., Liang, J., Yu, W., Yi, X., Yang, X., Li, Y., Han, X., Zhang, Y. et al. 2011. Histone demethylase JMJD2B coordinates H3K4/H3K9 methylation and promotes hormonally responsive breast, carcinogenesis. Proc Natl Acad Sci U S A, 108, 7541-7546. doi: doi:10.1073/pnas.1017374108.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 7541-7546
-
-
Shi, L.1
Sun, L.2
Li, Q.3
Liang, J.4
Yu, W.5
Yi, X.6
Yang, X.7
Li, Y.8
Han, X.9
Zhang, Y.10
-
95
-
-
77956648493
-
Pioneer factors in embryonic stem cells and differentiation
-
Smale S.T. Pioneer factors in embryonic stem cells and differentiation. Current Opinion in Genetics & Development 2010, 20:519-526. 10.1016/j.gde.2010.06.010.
-
(2010)
Current Opinion in Genetics & Development
, vol.20
, pp. 519-526
-
-
Smale, S.T.1
-
96
-
-
59349115177
-
Chemical mechanisms of histone lysine and arginine modifications
-
Smith B.C., Denu J.M. Chemical mechanisms of histone lysine and arginine modifications. Biochimica Et Biophysica Acta 2009, 1789:45-57. 10.1016/j.bbagrm.2008.06.005.
-
(2009)
Biochimica Et Biophysica Acta
, vol.1789
, pp. 45-57
-
-
Smith, B.C.1
Denu, J.M.2
-
97
-
-
80053539409
-
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
-
Song L., Zhang Z., Grasfeder L.L., Boyle A.P., Giresi P.G., Lee B.-K., Sheffield N.C., Gräf S., Huss M., Keefe D., et al. Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Research 2011, 21:1757-1767. 10.1101/gr.121541.111.
-
(2011)
Genome Research
, vol.21
, pp. 1757-1767
-
-
Song, L.1
Zhang, Z.2
Grasfeder, L.L.3
Boyle, A.P.4
Giresi, P.G.5
Lee, B.-K.6
Sheffield, N.C.7
Gräf, S.8
Huss, M.9
Keefe, D.10
-
98
-
-
0034663606
-
DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure
-
Staynov D.Z. DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure. Nucleic Acids Research 2000, 28:3092-3099.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 3092-3099
-
-
Staynov, D.Z.1
-
99
-
-
84861576201
-
The landscape of cancer genes and mutational processes in breast cancer
-
Stephens P.J., Tarpey P.S., Davies H., Van Loo P., Greenman C., Wedge D.C., Nik-Zainal S., Martin S., Varela I., Bignell G.R., et al. The landscape of cancer genes and mutational processes in breast cancer. Nature 2012, 486:400-404. 10.1038/nature11017.
-
(2012)
Nature
, vol.486
, pp. 400-404
-
-
Stephens, P.J.1
Tarpey, P.S.2
Davies, H.3
Van Loo, P.4
Greenman, C.5
Wedge, D.C.6
Nik-Zainal, S.7
Martin, S.8
Varela, I.9
Bignell, G.R.10
-
100
-
-
79960072084
-
AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription
-
Tan S.K., Lin Z.H., Chang C.W., Varang V., Chng K.R., Pan Y.F., Yong E.L., Sung W.-K., Sung W.K., Cheung E. AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription. The EMBO Journal 2011, 30:2569-2581. 10.1038/emboj.2011.151.
-
(2011)
The EMBO Journal
, vol.30
, pp. 2569-2581
-
-
Tan, S.K.1
Lin, Z.H.2
Chang, C.W.3
Varang, V.4
Chng, K.R.5
Pan, Y.F.6
Yong, E.L.7
Sung, W.-K.8
Sung, W.K.9
Cheung, E.10
-
101
-
-
84871995408
-
GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility
-
Theodorou V., Stark R., Menon S., Carroll J.S. GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility. Genome Research 2012, 10.1101/gr.139469.112.
-
(2012)
Genome Research
-
-
Theodorou, V.1
Stark, R.2
Menon, S.3
Carroll, J.S.4
-
102
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman R.E., Rynes E., Humbert R., Vierstra J., Maurano M.T., Haugen E., Sheffield N.C., Stergachis A.B., Wang H., Vernot B., et al. The accessible chromatin landscape of the human genome. Nature 2012, 489:75-82. 10.1038/nature11232.
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
-
103
-
-
68149170044
-
The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling
-
Tuupanen S., Turunen M., Lehtonen R., Hallikas O., Vanharanta S., Kivioja T., Björklund M., Wei G., Yan J., Niittymäki I., et al. The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling. Nature Genetics 2009, 41:885-890. 10.1038/ng.406.
-
(2009)
Nature Genetics
, vol.41
, pp. 885-890
-
-
Tuupanen, S.1
Turunen, M.2
Lehtonen, R.3
Hallikas, O.4
Vanharanta, S.5
Kivioja, T.6
Björklund, M.7
Wei, G.8
Yan, J.9
Niittymäki, I.10
-
104
-
-
13244272059
-
Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1
-
Vakoc C.R., Letting D.L., Gheldof N., Sawado T., Bender M.A., Groudine M., Weiss M.J., Dekker J., Blobel G.A. Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1. Molecular Cell 2005, 17:453-462. 10.1016/j.molcel.2004.12.028.
-
(2005)
Molecular Cell
, vol.17
, pp. 453-462
-
-
Vakoc, C.R.1
Letting, D.L.2
Gheldof, N.3
Sawado, T.4
Bender, M.A.5
Groudine, M.6
Weiss, M.J.7
Dekker, J.8
Blobel, G.A.9
-
105
-
-
24044540381
-
Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking
-
Wang Q., Carroll J.S., Brown M. Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking. Molecular Cell 2005, 19:631-642. 10.1016/j.molcel.2005.07.018.
-
(2005)
Molecular Cell
, vol.19
, pp. 631-642
-
-
Wang, Q.1
Carroll, J.S.2
Brown, M.3
-
106
-
-
67650758019
-
Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
-
Wang Q., Li W., Zhang Y., Yuan X., Xu K., Yu J., Chen Z., Beroukhim R., Wang H., Lupien M., et al. Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer. Cell 2009, 138:245-256. 10.1016/j.cell.2009.04.056.
-
(2009)
Cell
, vol.138
, pp. 245-256
-
-
Wang, Q.1
Li, W.2
Zhang, Y.3
Yuan, X.4
Xu, K.5
Yu, J.6
Chen, Z.7
Beroukhim, R.8
Wang, H.9
Lupien, M.10
-
107
-
-
84865852567
-
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
-
Wang J., Zhuang J., Iyer S., Lin X., Whitfield T.W., Greven M.C., Pierce B.G., Dong X., Kundaje A., Cheng Y., et al. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Research 2012, 22:1798-1812. 10.1101/gr.139105.112.
-
(2012)
Genome Research
, vol.22
, pp. 1798-1812
-
-
Wang, J.1
Zhuang, J.2
Iyer, S.3
Lin, X.4
Whitfield, T.W.5
Greven, M.C.6
Pierce, B.G.7
Dong, X.8
Kundaje, A.9
Cheng, Y.10
-
108
-
-
66549085342
-
ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands
-
Welboren W.-J., van Driel M.A., Janssen-Megens E.M., van Heeringen S.J., Sweep F.C., Span P.N., Stunnenberg H.G. ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands. The EMBO Journal 2009, 28:1418-1428. 10.1038/emboj.2009.88.
-
(2009)
The EMBO Journal
, vol.28
, pp. 1418-1428
-
-
Welboren, W.-J.1
van Driel, M.A.2
Janssen-Megens, E.M.3
van Heeringen, S.J.4
Sweep, F.C.5
Span, P.N.6
Stunnenberg, H.G.7
-
109
-
-
0024296557
-
Compilation of transcription regulating proteins
-
Wingender E. Compilation of transcription regulating proteins. Nucleic Acids Research 1988, 16:1879-1902.
-
(1988)
Nucleic Acids Research
, vol.16
, pp. 1879-1902
-
-
Wingender, E.1
-
110
-
-
77749323471
-
Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells
-
Wright J.B., Brown S.J., Cole M.D. Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells. Molecular and Cellular Biology 2010, 30:1411-1420. 10.1128/MCB.01384-09.
-
(2010)
Molecular and Cellular Biology
, vol.30
, pp. 1411-1420
-
-
Wright, J.B.1
Brown, S.J.2
Cole, M.D.3
-
111
-
-
84859585596
-
Histone H3R17me2a mark recruits human RNA polymerase-associated factor 1 complex to activate transcription
-
Wu J., Xu W. Histone H3R17me2a mark recruits human RNA polymerase-associated factor 1 complex to activate transcription. Proceedings of the National Academy of Sciences of the United States of America 2012, 109:5675-5680. 10.1073/pnas.1114905109.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, pp. 5675-5680
-
-
Wu, J.1
Xu, W.2
-
112
-
-
58249086425
-
Understanding the words of chromatin regulation
-
Wu J.I., Lessard J., Crabtree G.R. Understanding the words of chromatin regulation. Cell 2009, 136:200-206. 10.1016/j.cell.2009.01.009.
-
(2009)
Cell
, vol.136
, pp. 200-206
-
-
Wu, J.I.1
Lessard, J.2
Crabtree, G.R.3
-
113
-
-
84863062090
-
Research resource: the estrogen receptor α cistrome defined by DamIP
-
Xiao R., Sun D., Ayers S., Xi Y., Li W., Baxter J.D., Moore D.D. Research resource: the estrogen receptor α cistrome defined by DamIP. Molecular Endocrinology (Baltimore, Md.) 2012, 26:349-357. 10.1210/me.2011-1080.
-
(2012)
Molecular Endocrinology (Baltimore, Md.)
, vol.26
, pp. 349-357
-
-
Xiao, R.1
Sun, D.2
Ayers, S.3
Xi, Y.4
Li, W.5
Baxter, J.D.6
Moore, D.D.7
-
114
-
-
79952944310
-
Structure and mechanisms of lysine methylation recognition by the chromodomain in gene transcription
-
Yap K.L., Zhou M.-M. Structure and mechanisms of lysine methylation recognition by the chromodomain in gene transcription. Biochemistry 2011, 50:1966-1980. 10.1021/bi101885m.
-
(2011)
Biochemistry
, vol.50
, pp. 1966-1980
-
-
Yap, K.L.1
Zhou, M.-M.2
-
115
-
-
80455144479
-
Pioneer transcription factors: establishing competence for gene expression
-
Zaret K.S., Carroll J.S. Pioneer transcription factors: establishing competence for gene expression. Genes & Development 2011, 25:2227-2241. 10.1101/gad.176826.111.
-
(2011)
Genes & Development
, vol.25
, pp. 2227-2241
-
-
Zaret, K.S.1
Carroll, J.S.2
-
116
-
-
84864624041
-
Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus
-
Zhang X., Cowper-Sal Lari R., Bailey S.D., Moore J.H., Lupien M. Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus. Genome Research 2012, 22:1437-1446. 10.1101/gr.135665.111.
-
(2012)
Genome Research
, vol.22
, pp. 1437-1446
-
-
Zhang, X.1
Cowper-Sal Lari, R.2
Bailey, S.D.3
Moore, J.H.4
Lupien, M.5
-
117
-
-
84865190335
-
Peptidylarginine deiminase 2-catalyzed histone H3 arginine 26 citrullination facilitates estrogen receptor α target gene activation
-
Zhang X., Bolt M., Guertin M.J., Chen W., Zhang S., Cherrington B.D., Slade D.J., Dreyton C.J., Subramanian V., Bicker K.L., et al. Peptidylarginine deiminase 2-catalyzed histone H3 arginine 26 citrullination facilitates estrogen receptor α target gene activation. Proceedings of the National Academy of Sciences of the United States of America 2012, 109:13331-13336. 10.1073/pnas.1203280109.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, pp. 13331-13336
-
-
Zhang, X.1
Bolt, M.2
Guertin, M.J.3
Chen, W.4
Zhang, S.5
Cherrington, B.D.6
Slade, D.J.7
Dreyton, C.J.8
Subramanian, V.9
Bicker, K.L.10
-
118
-
-
82455188015
-
Oestrogen receptor-co-factor-chromatin specificity in the transcriptional regulation of breast cancer
-
Zwart W., Theodorou V., Kok M., Canisius S., Linn S., Carroll J.S. Oestrogen receptor-co-factor-chromatin specificity in the transcriptional regulation of breast cancer. The EMBO Journal 2011, 30:4764-4776. 10.1038/emboj.2011.368.
-
(2011)
The EMBO Journal
, vol.30
, pp. 4764-4776
-
-
Zwart, W.1
Theodorou, V.2
Kok, M.3
Canisius, S.4
Linn, S.5
Carroll, J.S.6
|