-
1
-
-
33646872978
-
Chromatin signatures of pluripotent cell lines
-
Azuara, V., P. Perry, S. Sauer, M. Spivakov, H. F. Jorgensen, R. M. John, M. Gouti, M. Casanova, G. Warnes, M. Merkenschlager, and A. G. Fisher. 2006. Chromatin signatures of pluripotent cell lines. Nat. Cell Biol. 8:532-538.
-
(2006)
Nat. Cell Biol.
, vol.8
, pp. 532-538
-
-
Azuara, V.1
Perry, P.2
Sauer, S.3
Spivakov, M.4
Jorgensen, H.F.5
John, R.M.6
Gouti, M.7
Casanova, M.8
Warnes, G.9
Merkenschlager, M.10
Fisher, A.G.11
-
2
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski, A., S. Cuddapah, K. Cui, T. Y. Roh, D. E. Schones, Z. Wang, G. Wei, I. Chepelev, and K. Zhao. 2007. High-resolution profiling of histone methylations in the human genome. Cell 129:823-837. (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
3
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E., T. S. Mikkelsen, X. Xie, M. Kamal, D. J. Huebert, J. Cuff, B. Fry, A. Meissner, M. Wernig, K. Plath, R. Jaenisch, A. Wagschal, R. Feil, S. L. Schreiber, and E. S. Lander. 2006. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125:315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
4
-
-
31144459985
-
Oncogenic pathway signatures in human cancers as a guide to targeted therapies
-
DOI 10.1038/nature04296, PII NATURE04296
-
Bild, A. H., G. Yao, J. T. Chang, Q. Wang, A. Potti, D. Chasse, M. B. Joshi, D. Harpole, J. M. Lancaster, A. Berchuck, J. A. Olson, Jr., J. R. Marks, H. K. Dressman, M. West, and J. R. Nevins. 2006. Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature 439:353-357. (Pubitemid 43128862)
-
(2006)
Nature
, vol.439
, Issue.7074
, pp. 353-357
-
-
Bild, A.H.1
Yao, G.2
Chang, J.T.3
Wang, Q.4
Potti, A.5
Chasse, D.6
Joshi, M.-B.7
Harpole, D.8
Lancaster, J.M.9
Berchuck, A.10
Olson Jr., J.A.11
Marks, J.R.12
Dressman, H.K.13
West, M.14
Nevins, J.R.15
-
5
-
-
2542463869
-
Genome-wide identification of high-affinity estrogen response elements in human and mouse
-
Bourdeau, V., J. Deschenes, R. Metivier, Y. Nagai, D. Nguyen, N. Bretschneider, F. Gannon, J. H. White, and S. Mader. 2004. Genome-wide identification of high-affinity estrogen response elements in human and mouse. Mol. Endocrinol. 18:1411-1427.
-
(2004)
Mol. Endocrinol.
, vol.18
, pp. 1411-1427
-
-
Bourdeau, V.1
Deschenes, J.2
Metivier, R.3
Nagai, Y.4
Nguyen, D.5
Bretschneider, N.6
Gannon, F.7
White, J.H.8
Mader, S.9
-
6
-
-
22144486551
-
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
-
DOI 10.1016/j.cell.2005.05.008, PII S0092867405004538
-
Carroll, J. S., X. S. Liu, A. S. Brodsky, W. Li, C. A. Meyer, A. J. Szary, J. Eeckhoute, W. Shao, E. V. Hestermann, T. R. Geistlinger, E. A. Fox, P. A. Silver, and M. Brown. 2005. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the Forkhead protein FoxA1. Cell 122:33-43. (Pubitemid 40977938)
-
(2005)
Cell
, vol.122
, Issue.1
, pp. 33-43
-
-
Carroll, J.S.1
Liu, X.S.2
Brodsky, A.S.3
Li, W.4
Meyer, C.A.5
Szary, A.J.6
Eeckhoute, J.7
Shao, W.8
Hestermann, E.V.9
Geistlinger, T.R.10
Fox, E.A.11
Silver, P.A.12
Brown, M.13
-
7
-
-
33750442923
-
Genome-wide analysis of estrogen receptor binding sites
-
Carroll, J. S., C. A. Meyer, J. Song, W. Li, T. R. Geistlinger, J. Eeckhoute, A. S. Brodsky, E. K. Keeton, K. C. Fertuck, G. F. Hall, Q. Wang, S. Bekiranov, V. Sementchenko, E. A. Fox, P. A. Silver, T. R. Gingeras, X. S. Liu, and M. Brown. 2006. Genome-wide analysis of estrogen receptor binding sites. Nat. Genet. 38:1289-1297.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1289-1297
-
-
Carroll, J.S.1
Meyer, C.A.2
Song, J.3
Li, W.4
Geistlinger, T.R.5
Eeckhoute, J.6
Brodsky, A.S.7
Keeton, E.K.8
Fertuck, K.C.9
Hall, G.F.10
Wang, Q.11
Bekiranov, S.12
Sementchenko, V.13
Fox, E.A.14
Silver, P.A.15
Gingeras, T.R.16
Liu, X.S.17
Brown, M.18
-
8
-
-
0033603396
-
Regulation of transcription by a protein methyltransferase
-
DOI 10.1126/science.284.5423.2174
-
Chen, D., H. Ma, H. Hong, S. S. Koh, S. M. Huang, B. T. Schurter, D. W. Aswad, and M. R. Stallcup. 1999. Regulation of transcription by a protein methyltransferase. Science 284:2174-2177. (Pubitemid 29297477)
-
(1999)
Science
, vol.284
, Issue.5423
, pp. 2174-2177
-
-
Chen, D.1
Ma, M.2
Hong, H.3
Koh, S.S.4
Huang, S.-M.5
Schurter, B.T.6
Aswad, D.W.7
Stallcup, M.R.8
-
9
-
-
33846001366
-
The Arginine Methyltransferase CARM1 Regulates the Coupling of Transcription and mRNA Processing
-
DOI 10.1016/j.molcel.2006.11.019, PII S1097276506007908
-
Cheng, D., J. Cote, S. Shaaban, and M. T. Bedford. 2007. The arginine methyltransferase CARM1 regulates the coupling of transcription and mRNA processing. Mol. Cell 25:71-83. (Pubitemid 46049059)
-
(2007)
Molecular Cell
, vol.25
, Issue.1
, pp. 71-83
-
-
Cheng, D.1
Cote, J.2
Shaaban, S.3
Bedford, M.T.4
-
10
-
-
33845191779
-
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
-
DOI 10.1016/j.ccr.2006.10.009, PII S1535610806003151
-
Chin, K., S. DeVries, J. Fridlyand, P. T. Spellman, R. Roydasgupta, W. L. Kuo, A. Lapuk, R. M. Neve, Z. Qian, T. Ryder, F. Chen, H. Feiler, T. Tokuyasu, C. Kingsley, S. Dairkee, Z. Meng, K. Chew, D. Pinkel, A. Jain, B. M. Ljung, L. Esserman, D. G. Albertson, F. M. Waldman, and J. W. Gray. 2006. Genomic and transcriptional aberrations linked to breast cancer pathophysiologies. Cancer Cell 10:529-541. (Pubitemid 44854748)
-
(2006)
Cancer Cell
, vol.10
, Issue.6
, pp. 529-541
-
-
Chin, K.1
Devries, S.2
Fridlyand, J.3
Spellman, P.T.4
Roydasgupta, R.5
Kuo, W.-L.6
Lapuk, A.7
Neve, R.M.8
Qian, Z.9
Ryder, T.10
Chen, F.11
Feiler, H.12
Tokuyasu, T.13
Kingsley, C.14
Dairkee, S.15
Meng, Z.16
Chew, K.17
Pinkel, D.18
Jain, A.19
Ljung, B.M.20
Esserman, L.21
Albertson, D.G.22
Waldman, F.M.23
Gray, J.W.24
more..
-
11
-
-
0242442571
-
The Gene Expression Response of Breast Cancer to Growth Regulators: Patterns and Correlation with Tumor Expression Profiles
-
Cunliffe, H. E., M. Ringner, S. Bilke, R. L. Walker, J. M. Cheung, Y. Chen, and P. S. Meltzer. 2003. The gene expression response of breast cancer to growth regulators: patterns and correlation with tumor expression profiles. Cancer Res. 63:7158-7166. (Pubitemid 37413453)
-
(2003)
Cancer Research
, vol.63
, Issue.21
, pp. 7158-7166
-
-
Cunliffe, H.E.1
Ringner, M.2
Bilke, S.3
Walker, R.L.4
Cheung, J.M.5
Chen, Y.6
Meltzer, P.S.7
-
12
-
-
34547108859
-
Regulation of GREB1 transcription by estrogen receptor alpha through a multipartite enhancer spread over 20 kb of upstream flanking sequences
-
Deschenes, J., V. Bourdeau, J. H. White, and S. Mader. 2007. Regulation of GREB1 transcription by estrogen receptor alpha through a multipartite enhancer spread over 20 kb of upstream flanking sequences. J. Biol. Chem. 282:17335-17339.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 17335-17339
-
-
Deschenes, J.1
Bourdeau, V.2
White, J.H.3
Mader, S.4
-
13
-
-
34250652449
-
Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series
-
Desmedt, C., F. Piette, S. Loi, Y. Wang, F. Lallemand, B. Haibe-Kains, G. Viale, M. Delorenzi, Y. Zhang, M. S. d'Assignies, J. Bergh, R. Lidereau, P. Ellis, A. L. Harris, J. G. Klijn, J. A. Foekens, F. Cardoso, M. J. Piccart, M. Buyse, and C. Sotiriou. 2007. Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series. Clin. Cancer Res. 13:3207-3214.
-
(2007)
Clin. Cancer Res.
, vol.13
, pp. 3207-3214
-
-
Desmedt, C.1
Piette, F.2
Loi, S.3
Wang, Y.4
Lallemand, F.5
Haibe-Kains, B.6
Viale, G.7
Delorenzi, M.8
Zhang, Y.9
D'Assignies, M.S.10
Bergh, J.11
Lidereau, R.12
Ellis, P.13
Harris, A.L.14
Klijn, J.G.15
Foekens, J.A.16
Cardoso, F.17
Piccart, M.J.18
Buyse, M.19
Sotiriou, C.20
more..
-
14
-
-
46649102261
-
Genomics of signaling crosstalk of estrogen receptor α in breast cancer cells
-
DOI 10.1371/journal.pone.0001859
-
Dudek, P., and D. Picard. 2008. Genomics of signaling crosstalk of estrogen receptor alpha in breast cancer cells. PLoS ONE 3:e1859. (Pubitemid 351936456)
-
(2008)
PLoS ONE
, vol.3
, Issue.3
-
-
Dudek, P.1
Picard, D.2
-
15
-
-
33748679908
-
A cell-type-specific transcriptional network required for estrogen regulation of cyclin D1 and cell cycle progression in breast cancer
-
DOI 10.1101/gad.1446006
-
Eeckhoute, J., J. S. Carroll, T. R. Geistlinger, M. I. Torres-Arzayus, and M. Brown. 2006. A cell-type-specific transcriptional network required for estrogen regulation of cyclin D1 and cell cycle progression in breast cancer. Genes Dev. 20:2513-2526. (Pubitemid 44396837)
-
(2006)
Genes and Development
, vol.20
, Issue.18
, pp. 2513-2526
-
-
Eeckhoute, J.1
Carroll, J.S.2
Geistlinger, T.R.3
Torres-Arzayus, M.I.4
Brown, M.5
-
16
-
-
34447130861
-
Positive cross-regulatory loop ties GATA-3 to estrogen receptor α expression in breast cancer
-
DOI 10.1158/0008-5472.CAN-07-0746
-
Eeckhoute, J., E. K. Keeton, M. Lupien, S. A. Krum, J. S. Carroll, and M. Brown. 2007. Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer. Cancer Res. 67:6477-6483. (Pubitemid 47037533)
-
(2007)
Cancer Research
, vol.67
, Issue.13
, pp. 6477-6483
-
-
Eeckhoute, J.1
Keeton, E.K.2
Lupien, M.3
Krum, S.A.4
Carroll, J.S.5
Brown, M.6
-
17
-
-
61849119137
-
Cell-type selective remodeling defines the active subset of FOXA1-bound enhancers
-
Eeckhoute, J., M. Lupien, C. A. Meyer, M. P. Verzi, R. A. Shivdasani, X. S. Liu, and M. Brown. 2008. Cell-type selective remodeling defines the active subset of FOXA1-bound enhancers. Genome Res. 19:372-380.
-
(2008)
Genome Res.
, vol.19
, pp. 372-380
-
-
Eeckhoute, J.1
Lupien, M.2
Meyer, C.A.3
Verzi, M.P.4
Shivdasani, R.A.5
Liu, X.S.6
Brown, M.7
-
18
-
-
29244460109
-
Double chromodomains cooperate to recognize the methylated histone H3 tail
-
DOI 10.1038/nature04290
-
Flanagan, J. F., L. Z. Mi, M. Chruszcz, M. Cymborowski, K. L. Clines, Y. Kim, W. Minor, F. Rastinejad, and S. Khorasanizadeh. 2005. Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature 438:1181-1185. (Pubitemid 41831690)
-
(2005)
Nature
, vol.438
, Issue.7071
, pp. 1181-1185
-
-
Flanagan, J.F.1
Mi, L.-Z.2
Chruszcz, M.3
Cymborowski, M.4
Clines, K.L.5
Kim, Y.6
Minor, W.7
Rastinejad, F.8
Khorasanizadeh, S.9
-
19
-
-
39149092383
-
CARM1 regulates estrogen-stimulated breast cancer growth through up-regulation of E2F1
-
Frietze, S., M. Lupien, P. A. Silver, and M. Brown. 2008. CARM1 regulates estrogen-stimulated breast cancer growth through up-regulation of E2F1. Cancer Res. 68:301-306.
-
(2008)
Cancer Res.
, vol.68
, pp. 301-306
-
-
Frietze, S.1
Lupien, M.2
Silver, P.A.3
Brown, M.4
-
20
-
-
33748082671
-
Prognosis and gene expression profiling of 20q13-amplified breast cancers
-
Ginestier, C., N. Cervera, P. Finetti, S. Esteyries, B. Esterni, J. Adelaide, L. Xerri, P. Viens, J. Jacquemier, E. Charafe-Jauffret, M. Chaffanet, D. Birnbaum, and F. Bertucci. 2006. Prognosis and gene expression profiling of 20q13-amplified breast cancers. Clin. Cancer Res. 12:4533-4544.
-
(2006)
Clin. Cancer Res.
, vol.12
, pp. 4533-4544
-
-
Ginestier, C.1
Cervera, N.2
Finetti, P.3
Esteyries, S.4
Esterni, B.5
Adelaide, J.6
Xerri, L.7
Viens, P.8
Jacquemier, J.9
Charafe-Jauffret, E.10
Chaffanet, M.11
Birnbaum, D.12
Bertucci, F.13
-
21
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
DOI 10.1101/gr.5533506
-
Giresi, P. G., J. Kim, R. M. McDaniell, V. R. Iyer, and J. D. Lieb. 2007. FAIRE (formaldehyde-assisted isolation of regulatory elements) isolates active regulatory elements from human chromatin. Genome Res. 17:877-885. (Pubitemid 46919722)
-
(2007)
Genome Research
, vol.17
, Issue.6
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
22
-
-
34548248572
-
Oestrogen-receptor-mediated transcription and the influence of cofactors and chromatin state
-
Green, K. A., and J. S. Carroll. 2007. Oestrogen-receptor-mediated transcription and the influence of cofactors and chromatin state. Nat. Rev. Cancer 7:713-722.
-
(2007)
Nat. Rev. Cancer
, vol.7
, pp. 713-722
-
-
Green, K.A.1
Carroll, J.S.2
-
23
-
-
0035881617
-
Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns
-
Gruvberger, S., M. Ringner, Y. Chen, S. Panavally, L. H. Saal, A. Borg, M. Ferno, C. Peterson, and P. S. Meltzer. 2001. Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns. Cancer Res. 61:5979-5984. (Pubitemid 32762524)
-
(2001)
Cancer Research
, vol.61
, Issue.16
, pp. 5979-5984
-
-
Gruvberger, S.1
Ringner, M.2
Chen, Y.3
Panavally, S.4
Saal, L.H.5
Borg, A.6
Ferno, M.7
Peterson, C.8
Meltzer, P.S.9
-
24
-
-
34447098370
-
A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
-
DOI 10.1016/j.cell.2007.05.042, PII S0092867407006812
-
Guenther, M. G., S. S. Levine, L. A. Boyer, R. Jaenisch, and R. A. Young. 2007. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130:77-88. (Pubitemid 47031323)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
25
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman, N. D., R. K. Stuart, G. Hon, Y. Fu, C. W. Ching, R. D. Hawkins, L. O. Barrera, S. Van Calcar, C. Qu, K. A. Ching, W. Wang, Z. Weng, R. D. Green, G. E. Crawford, and B. Ren. 2007. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39:311-318.
-
(2007)
Nat. Genet.
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
26
-
-
33749030177
-
Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer
-
Hess, K. R., K. Anderson, W. F. Symmans, V. Valero, N. Ibrahim, J. A. Mejia, D. Booser, R. L. Theriault, A. U. Buzdar, P. J. Dempsey, R. Rouzier, N. Sneige, J. S. Ross, T. Vidaurre, H. L. Gomez, G. N. Hortobagyi, and L. Pusztai. 2006. Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer. J. Clin. Oncol. 24:4236-4244.
-
(2006)
J. Clin. Oncol.
, vol.24
, pp. 4236-4244
-
-
Hess, K.R.1
Anderson, K.2
Symmans, W.F.3
Valero, V.4
Ibrahim, N.5
Mejia, J.A.6
Booser, D.7
Theriault, R.L.8
Buzdar, A.U.9
Dempsey, P.J.10
Rouzier, R.11
Sneige, N.12
Ross, J.S.13
Vidaurre, T.14
Gomez, H.L.15
Hortobagyi, G.N.16
Pusztai, L.17
-
27
-
-
33751261643
-
Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer
-
DOI 10.1158/0008-5472.CAN-05-4414
-
Ivshina, A. V., J. George, O. Senko, B. Mow, T. C. Putti, J. Smeds, T. Lindahl, Y. Pawitan, P. Hall, H. Nordgren, J. E. Wong, E. T. Liu, J. Bergh, V. A. Kuznetsov, and L. D. Miller. 2006. Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer. Cancer Res. 66:10292-10301. (Pubitemid 44799747)
-
(2006)
Cancer Research
, vol.66
, Issue.21
, pp. 10292-10301
-
-
Ivshina, A.V.1
George, J.2
Senko, O.3
Mow, B.4
Putti, T.C.5
Smeds, J.6
Lindahl, T.7
Pawitan, Y.8
Hall, P.9
Nordgren, H.10
Wong, J.E.L.11
Liu, E.T.12
Bergh, J.13
Kuznetsov, V.A.14
Miller, L.D.15
-
28
-
-
33747836850
-
CEAS: Cis-regulatory element annotation system
-
Ji, X., W. Li, J. Song, L. Wei, and X. S. Liu. 2006. CEAS: cis-regulatory element annotation system. Nucleic Acids Res. 34:W551-W554.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Ji, X.1
Li, W.2
Song, J.3
Wei, L.4
Liu, X.S.5
-
29
-
-
40449126726
-
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
-
DOI 10.1101/gr.7080508
-
Johnson, D. S., W. Li, D. B. Gordon, A. Bhattacharjee, B. Curry, J. Ghosh, L. Brizuela, J. S. Carroll, M. Brown, P. Flicek, C. M. Koch, I. Dunham, M. Bieda, X. Xu, P. J. Farnham, P. Kapranov, D. A. Nix, T. R. Gingeras, X. Zhang, H. Holster, N. Jiang, R. Green, J. S. Song, S. A. McCuine, E. Anton, L. Nguyen, N. D. Trinklein, Z. Ye, K. Ching, D. Hawkins, B. Ren, P. C. Scacheri, J. Rozowsky, A. Karpikov, G. Euskirchen, S. Weissman, M. Gerstein, M. Snyder, A. Yang, Z. Moqtaderi, H. Hirsch, H. P. Shulha, Y. Fu, Z. Weng, K. Struhl, R. M. Myers, J. D. Lieb, and X. S. Liu. 2008. Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Res. 18:393-403. (Pubitemid 351347082)
-
(2008)
Genome Research
, vol.18
, Issue.3
, pp. 393-403
-
-
Johnson, D.S.1
Li, W.2
Gordon, D.B.3
Bhattacharjee, A.4
Curry, B.5
Ghosh, J.6
Brizuela, L.7
Carroll, J.S.8
Brown, M.9
Flicek, P.10
Koch, C.M.11
Dunham, I.12
Bieda, M.13
Xu, X.14
Farnham, P.J.15
Kapranov, P.16
Nix, D.A.17
Gingeras, T.R.18
Zhang, X.19
Holster, H.20
Jiang, N.21
Green, R.D.22
Song, J.S.23
McCuine, S.A.24
Anton, E.25
Nguyen, L.26
Trinklein, N.D.27
Ye, Z.28
Ching, K.29
Hawkins, D.30
Ren, B.31
Scacheri, P.C.32
Rozowsky, J.33
Karpikov, A.34
Euskirchen, G.35
Weissman, S.36
Gerstein, M.37
Snyder, M.38
Yang, A.39
Moqtaderi, Z.40
Hirsch, H.41
Shulha, H.P.42
Fu, Y.43
Weng, Z.44
Struhl, K.45
Myers, R.M.46
Lieb, J.D.47
Liu, X.S.48
more..
-
30
-
-
33747587864
-
Model-based analysis of tiling-arrays for ChIP-chip
-
Johnson, W. E., W. Li, C. A. Meyer, R. Gottardo, J. S. Carroll, M. Brown, and X. S. Liu. 2006. Model-based analysis of tiling-arrays for ChIP-chip. Proc. Natl. Acad. Sci. USA 103:12457-12462.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 12457-12462
-
-
Johnson, W.E.1
Li, W.2
Meyer, C.A.3
Gottardo, R.4
Carroll, J.S.5
Brown, M.6
Liu, X.S.7
-
31
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
DOI 10.1038/nature03877
-
Kim, T. H., L. O. Barrera, M. Zheng, C. Qu, M. A. Singer, T. A. Richmond, Y. Wu, R. D. Green, and B. Ren. 2005. A high-resolution map of active promoters in the human genome. Nature 436:876-880. (Pubitemid 41160649)
-
(2005)
Nature
, vol.436
, Issue.7052
, pp. 876-880
-
-
Kim, T.H.1
Barrera, L.O.2
Zheng, M.3
Qu, C.4
Singer, M.A.5
Richmond, T.A.6
Wu, Y.7
Green, R.D.8
Ren, B.9
-
32
-
-
34447519218
-
Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters
-
Kininis, M., B. S. Chen, A. G. Diehl, G. D. Isaacs, T. Zhang, A. C. Siepel, A. G. Clark, and W. L. Kraus. 2007. Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters. Mol. Cell. Biol. 27:5090-5104.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 5090-5104
-
-
Kininis, M.1
Chen, B.S.2
Diehl, A.G.3
Isaacs, G.D.4
Zhang, T.5
Siepel, A.C.6
Clark, A.G.7
Kraus, W.L.8
-
33
-
-
61749092693
-
Postrecruitment regulation of RNA polymerase II directs rapid signaling responses at the promoters of estrogen target genes
-
Kininis, M., G. D. Isaacs, L. J. Core, N. Hah, and W. L. Kraus. 2009. Postrecruitment regulation of RNA polymerase II directs rapid signaling responses at the promoters of estrogen target genes. Mol. Cell. Biol. 29:1123-1133.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 1123-1133
-
-
Kininis, M.1
Isaacs, G.D.2
Core, L.J.3
Hah, N.4
Kraus, W.L.5
-
34
-
-
55049107572
-
Unique ERα cistromes control cell type-specific gene regulation
-
Krum, S. A., G. A. Miranda-Carboni, M. Lupien, J. Eeckhoute, J. S. Carroll, and M. Brown. 2008. Unique ERα cistromes control cell type-specific gene regulation. Mol. Endocrinol. 22:2393-2406.
-
(2008)
Mol. Endocrinol.
, vol.22
, pp. 2393-2406
-
-
Krum, S.A.1
Miranda-Carboni, G.A.2
Lupien, M.3
Eeckhoute, J.4
Carroll, J.S.5
Brown, M.6
-
35
-
-
33846659953
-
Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters
-
Kwon, Y. S., I. Garcia-Bassets, K. R. Hutt, C. S. Cheng, M. Jin, D. Liu, C. Benner, D. Wang, Z. Ye, M. Bibikova, J. B. Fan, L. Duan, C. K. Glass, M. G. Rosenfeld, and X. D. Fu. 2007. Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters. Proc. Natl. Acad. Sci. USA 104:4852-4857.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 4852-4857
-
-
Kwon, Y.S.1
Garcia-Bassets, I.2
Hutt, K.R.3
Cheng, C.S.4
Jin, M.5
Liu, D.6
Benner, C.7
Wang, D.8
Ye, Z.9
Bibikova, M.10
Fan, J.B.11
Duan, L.12
Glass, C.K.13
Rosenfeld, M.G.14
Fu, X.D.15
-
36
-
-
33646865180
-
Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells
-
DOI 10.1016/j.cell.2006.02.043, PII S0092867406003849
-
Lee, T. I., R. G. Jenner, L. A. Boyer, M. G. Guenther, S. S. Levine, R. M. Kumar, B. Chevalier, S. E. Johnstone, M. F. Cole, K. Isono, H. Koseki, T. Fuchikami, K. Abe, H. L. Murray, J. P. Zucker, B. Yuan, G. W. Bell, E. Herbolsheimer, N. M. Hannett, K. Sun, D. T. Odom, A. P. Otte, T. L. Volkert, D. P. Bartel, D. A. Melton, D. K. Gifford, R. Jaenisch, and R. A. Young. 2006. Control of developmental regulators by Polycomb in human embryonic stem cells. Cell 125:301-313. (Pubitemid 44313811)
-
(2006)
Cell
, vol.125
, Issue.2
, pp. 301-313
-
-
Lee, T.I.1
Jenner, R.G.2
Boyer, L.A.3
Guenther, M.G.4
Levine, S.S.5
Kumar, R.M.6
Chevalier, B.7
Johnstone, S.E.8
Cole, M.F.9
Isono, K.-I.10
Koseki, H.11
Fuchikami, T.12
Abe, K.13
Murray, H.L.14
Zucker, J.P.15
Yuan, B.16
Bell, G.W.17
Herbolsheimer, E.18
Hannett, N.M.19
Sun, K.20
Odom, D.T.21
Otte, A.P.22
Volkert, T.L.23
Bartel, D.P.24
Melton, D.A.25
Gifford, D.K.26
Jaenisch, R.27
Young, R.A.28
more..
-
37
-
-
34347345081
-
Whole-genome cartography of estrogen receptor alpha binding sites
-
Lin, C. Y., V. B. Vega, J. S. Thomsen, T. Zhang, S. L. Kong, M. Xie, K. P. Chiu, L. Lipovich, D. H. Barnett, F. Stossi, A. Yeo, J. George, V. A. Kuznetsov, Y. K. Lee, T. H. Charn, N. Palanisamy, L. D. Miller, E. Cheung, B. S. Katzenellenbogen, Y. Ruan, G. Bourque, C. L. Wei, and E. T. Liu. 2007. Whole-genome cartography of estrogen receptor alpha binding sites. PLoS Genet. 3:e87.
-
(2007)
PLoS Genet.
, vol.3
-
-
Lin, C.Y.1
Vega, V.B.2
Thomsen, J.S.3
Zhang, T.4
Kong, S.L.5
Xie, M.6
Chiu, K.P.7
Lipovich, L.8
Barnett, D.H.9
Stossi, F.10
Yeo, A.11
George, J.12
Kuznetsov, V.A.13
Lee, Y.K.14
Charn, T.H.15
Palanisamy, N.16
Miller, L.D.17
Cheung, E.18
Katzenellenbogen, B.S.19
Ruan, Y.20
Bourque, G.21
Wei, C.L.22
Liu, E.T.23
more..
-
38
-
-
33645814398
-
CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1
-
Ling, J. Q., T. Li, J. F. Hu, T. H. Vu, H. L. Chen, X. W. Qiu, A. M. Cherry, and A. R. Hoffman. 2006. CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312:269-272.
-
(2006)
Science
, vol.312
, pp. 269-272
-
-
Ling, J.Q.1
Li, T.2
Hu, J.F.3
Vu, T.H.4
Chen, H.L.5
Qiu, X.W.6
Cherry, A.M.7
Hoffman, A.R.8
-
39
-
-
40649113925
-
The genome landscape of ERα- And ERβ-binding DNA regions
-
Liu, Y., H. Gao, T. T. Marstrand, A. Strom, E. Valen, A. Sandelin, J. A. Gustafsson, and K. Dahlman-Wright. 2008. The genome landscape of ERα- and ERβ-binding DNA regions. Proc. Natl. Acad. Sci. USA 105:2604-2609.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 2604-2609
-
-
Liu, Y.1
Gao, H.2
Marstrand, T.T.3
Strom, A.4
Valen, E.5
Sandelin, A.6
Gustafsson, J.A.7
Dahlman-Wright, K.8
-
40
-
-
40849085514
-
FoxA1 translates epigenetic signatures into enhancer driven lineage-specific transcription
-
Lupien, M., J. Eeckhoute, C. Meyer, Q. Wang, Y. Zhang, W. Li, J. Carroll, X. Liu, and M. Brown. 2008. FoxA1 translates epigenetic signatures into enhancer driven lineage-specific transcription. Cell 132:958-970.
-
(2008)
Cell
, vol.132
, pp. 958-970
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.3
Wang, Q.4
Zhang, Y.5
Li, W.6
Carroll, J.7
Liu, X.8
Brown, M.9
-
41
-
-
2642544592
-
Estrogen receptor-α directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
-
DOI 10.1016/S0092-8674(03)00934-6
-
Metivier, R., G. Penot, M. R. Hubner, G. Reid, H. Brand, M. Kos, and F. Gannon. 2003. Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 115:751-763. (Pubitemid 38030303)
-
(2003)
Cell
, vol.115
, Issue.6
, pp. 751-763
-
-
Metivier, R.1
Penot, G.2
Hubner, M.R.3
Reid, G.4
Brand, H.5
Kos, M.6
Gannon, F.7
-
42
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
DOI 10.1038/nature06008, PII NATURE06008
-
Mikkelsen, T. S., M. Ku, D. B. Jaffe, B. Issac, E. Lieberman, G. Giannoukos, P. Alvarez, W. Brockman, T. K. Kim, R. P. Koche, W. Lee, E. Mendenhall, A. O'Donovan, A. Presser, C. Russ, X. Xie, A. Meissner, M. Wernig, R. Jaenisch, C. Nusbaum, E. S. Lander, and B. E. Bernstein. 2007. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448:553-560. (Pubitemid 47206934)
-
(2007)
Nature
, vol.448
, Issue.7153
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.-K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
43
-
-
26444546442
-
An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival
-
Miller, L. D., J. Smeds, J. George, V. B. Vega, L. Vergara, A. Ploner, Y. Pawitan, P. Hall, S. Klaar, E. T. Liu, and J. Bergh. 2005. An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival. Proc. Natl. Acad. Sci. USA 102:13550-13555.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 13550-13555
-
-
Miller, L.D.1
Smeds, J.2
George, J.3
Vega, V.B.4
Vergara, L.5
Ploner, A.6
Pawitan, Y.7
Hall, P.8
Klaar, S.9
Liu, E.T.10
Bergh, J.11
-
44
-
-
23144461051
-
Genes that mediate breast cancer metastasis to lung
-
DOI 10.1038/nature03799
-
Minn, A. J., G. P. Gupta, P. M. Siegel, P. D. Bos, W. Shu, D. D. Giri, A. Viale, A. B. Olshen, W. L. Gerald, and J. Massague. 2005. Genes that mediate breast cancer metastasis to lung. Nature 436:518-524. (Pubitemid 41112921)
-
(2005)
Nature
, vol.436
, Issue.7050
, pp. 518-524
-
-
Minn, A.J.1
Gupta, G.P.2
Siegel, P.M.3
Bos, P.D.4
Shu, W.5
Giri, D.D.6
Viale, A.7
Olshen, A.B.8
Gerald, W.L.9
Massague, J.10
-
45
-
-
38149133051
-
Transcription factories are nuclear subcompartments that remain in the absence of transcription
-
Mitchell, J. A., and P. Fraser. 2008. Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev. 22:20-25.
-
(2008)
Genes Dev.
, vol.22
, pp. 20-25
-
-
Mitchell, J.A.1
Fraser, P.2
-
46
-
-
37849026542
-
The skeletal response to estrogen is impaired in female but not in male steroid receptor coactivator (SRC)-1 knockout mice
-
Modder, U. I., A. Sanyal, J. Xu, B. W. O'Malley, T. C. Spelsberg, and S. Khosla. 2008. The skeletal response to estrogen is impaired in female but not in male steroid receptor coactivator (SRC)-1 knockout mice. Bone 42:414-421.
-
(2008)
Bone
, vol.42
, pp. 414-421
-
-
Modder, U.I.1
Sanyal, A.2
Xu, J.3
O'Malley, B.W.4
Spelsberg, T.C.5
Khosla, S.6
-
47
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
Muse, G. W., D. A. Gilchrist, S. Nechaev, R. Shah, J. S. Parker, S. F. Grissom, J. Zeitlinger, and K. Adelman. 2007. RNA polymerase is poised for activation across the genome. Nat. Genet. 39:1507-1511.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
Gilchrist, D.A.2
Nechaev, S.3
Shah, R.4
Parker, J.S.5
Grissom, S.F.6
Zeitlinger, J.7
Adelman, K.8
-
48
-
-
33845789120
-
The activity and stability of the transcriptional coactivator p/CIP/SRC-3 are regulated by CARM1-dependent methylation
-
Naeem, H., D. Cheng, Q. Zhao, C. Underhill, M. Tini, M. T. Bedford, and J. Torchia. 2007. The activity and stability of the transcriptional coactivator p/CIP/SRC-3 are regulated by CARM1-dependent methylation. Mol. Cell. Biol. 27:120-134.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 120-134
-
-
Naeem, H.1
Cheng, D.2
Zhao, Q.3
Underhill, C.4
Tini, M.5
Bedford, M.T.6
Torchia, J.7
-
49
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
Osborne, C. S., L. Chakalova, K. E. Brown, D. Carter, A. Horton, E. Debrand, B. Goyenechea, J. A. Mitchell, S. Lopes, W. Reik, and P. Fraser. 2004. Active genes dynamically colocalize to shared sites of ongoing transcription. Nat. Genet. 36:1065-1071.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
Debrand, E.6
Goyenechea, B.7
Mitchell, J.A.8
Lopes, S.9
Reik, W.10
Fraser, P.11
-
50
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
Perou, C. M., S. S. Jeffrey, M. van de Rijn, C. A. Rees, M. B. Eisen, D. T. Ross, A. Pergamenschikov, C. F. Williams, S. X. Zhu, J. C. Lee, D. Lashkari, D. Shalon, P. O. Brown, and D. Botstein. 1999. Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc. Natl. Acad. Sci. USA 96:9212-9217.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
Van De Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.10
Lashkari, D.11
Shalon, D.12
Brown, P.O.13
Botstein, D.14
-
51
-
-
13844250828
-
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
-
Pollack, J. R., T. Sorlie, C. M. Perou, C. A. Rees, S. S. Jeffrey, P. E. Lonning, R. Tibshirani, D. Botstein, A. L. Borresen-Dale, and P. O. Brown. 2002. Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc. Natl. Acad. Sci. USA 99:12963-12968.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12963-12968
-
-
Pollack, J.R.1
Sorlie, T.2
Perou, C.M.3
Rees, C.A.4
Jeffrey, S.S.5
Lonning, P.E.6
Tibshirani, R.7
Botstein, D.8
Borresen-Dale, A.L.9
Brown, P.O.10
-
52
-
-
13444267442
-
Chd1 chromodomain links histone H3 methylation with SAGA- And SLIK-dependent acetylation
-
DOI 10.1038/nature03242
-
Pray-Grant, M. G., J. A. Daniel, D. Schieltz, J. R. Yates III, and P. A. Grant. 2005. Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation. Nature 433:434-438. (Pubitemid 40203325)
-
(2005)
Nature
, vol.433
, Issue.7024
, pp. 434-438
-
-
Pray-Grant, M.G.1
Daniel, J.A.2
Schieltz, D.3
Yates III, J.R.4
Grant, P.A.5
-
53
-
-
17044399754
-
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon Saccharomyces cerevisiae stationary phase exit
-
Radonjic, M., J. C. Andrau, P. Lijnzaad, P. Kemmeren, T. T. Kockelkorn, D. van Leenen, N. L. van Berkum, and F. C. Holstege. 2005. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon Saccharomyces cerevisiae stationary phase exit. Mol. Cell 18:171-183.
-
(2005)
Mol. Cell
, vol.18
, pp. 171-183
-
-
Radonjic, M.1
Andrau, J.C.2
Lijnzaad, P.3
Kemmeren, P.4
Kockelkorn, T.T.5
Van Leenen, D.6
Van Berkum, N.L.7
Holstege, F.C.8
-
54
-
-
32044453343
-
X chromosomal abnormalities in basal-like human breast cancer
-
DOI 10.1016/j.ccr.2006.01.013, PII S1535610806000298
-
Richardson, A. L., Z. C. Wang, A. De Nicolo, X. Lu, M. Brown, A. Miron, X. Liao, J. D. Iglehart, D. M. Livingston, and S. Ganesan. 2006. X chromosomal abnormalities in basal-like human breast cancer. Cancer Cell 9:121-132. (Pubitemid 43202662)
-
(2006)
Cancer Cell
, vol.9
, Issue.2
, pp. 121-132
-
-
Richardson, A.L.1
Wang, Z.C.2
De Nicolo, A.3
Lu, X.4
Brown, M.5
Miron, A.6
Liao, X.7
Iglehart, J.D.8
Livingston, D.M.9
Ganesan, S.10
-
55
-
-
34250687198
-
Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity
-
Saal, L. H., P. Johansson, K. Holm, S. K. Gruvberger-Saal, Q. B. She, M. Maurer, S. Koujak, A. A. Ferrando, P. Malmstrom, L. Memeo, J. Isola, P. O. Bendahl, N. Rosen, H. Hibshoosh, M. Ringner, A. Borg, and R. Parsons. 2007. Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity. Proc. Natl. Acad. Sci. USA 104:7564-7569.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 7564-7569
-
-
Saal, L.H.1
Johansson, P.2
Holm, K.3
Gruvberger-Saal, S.K.4
She, Q.B.5
Maurer, M.6
Koujak, S.7
Ferrando, A.A.8
Malmstrom, P.9
Memeo, L.10
Isola, J.11
Bendahl, P.O.12
Rosen, N.13
Hibshoosh, H.14
Ringner, M.15
Borg, A.16
Parsons, R.17
-
56
-
-
0345708105
-
Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin
-
DOI 10.1016/S1097-2765(03)00438-6
-
Santos-Rosa, H., R. Schneider, B. E. Bernstein, N. Karabetsou, A. Morillon, C. Weise, S. L. Schreiber, J. Mellor, and T. Kouzarides. 2003. Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin. Mol. Cell 12:1325-1332. (Pubitemid 37487939)
-
(2003)
Molecular Cell
, vol.12
, Issue.5
, pp. 1325-1332
-
-
Santos-Rosa, H.1
Schneider, R.2
Bernstein, B.E.3
Karabetsou, N.4
Morillon, A.5
Weise, C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
57
-
-
0033637703
-
Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription
-
Shang, Y., X. Hu, J. DiRenzo, M. A. Lazar, and M. Brown. 2000. Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription. Cell 103:843-852.
-
(2000)
Cell
, vol.103
, pp. 843-852
-
-
Shang, Y.1
Hu, X.2
DiRenzo, J.3
Lazar, M.A.4
Brown, M.5
-
58
-
-
29644433964
-
Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains
-
Sims, R. J., III, C. F. Chen, H. Santos-Rosa, T. Kouzarides, S. S. Patel, and D. Reinberg. 2005. Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains. J. Biol. Chem. 280:41789-41792.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 41789-41792
-
-
Sims III, R.J.1
Chen, C.F.2
Santos-Rosa, H.3
Kouzarides, T.4
Patel, S.S.5
Reinberg, D.6
-
59
-
-
0036135671
-
Genetic ablation of the steroid receptor coactivator-ubiquitin ligase, E6-AP, results in tissue-selective steroid hormone resistance and defects in reproduction
-
Smith, C. L., D. G. DeVera, D. J. Lamb, Z. Nawaz, Y. H. Jiang, A. L. Beaudet, and B. W. O'Malley. 2002. Genetic ablation of the steroid receptor coactivator-ubiquitin ligase, E6-AP, results in tissue-selective steroid hormone resistance and defects in reproduction. Mol. Cell. Biol. 22:525-535.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 525-535
-
-
Smith, C.L.1
DeVera, D.G.2
Lamb, D.J.3
Nawaz, Z.4
Jiang, Y.H.5
Beaudet, A.L.6
O'Malley, B.W.7
-
60
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie, T., C. M. Perou, R. Tibshirani, T. Aas, S. Geisler, H. Johnsen, T. Hastie, M. B. Eisen, M. van de Rijn, S. S. Jeffrey, T. Thorsen, H. Quist, J. C. Matese, P. O. Brown, D. Botstein, P. Eystein Lonning, and A. L. Borresen-Dale. 2001. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc. Natl. Acad. Sci. USA 98:10869-10874.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
Van De Rijn, M.9
Jeffrey, S.S.10
Thorsen, T.11
Quist, H.12
Matese, J.C.13
Brown, P.O.14
Botstein, D.15
Eystein Lonning, P.16
Borresen-Dale, A.L.17
-
61
-
-
0042838307
-
Breast cancer classification and prognosis based on gene expression profiles from a population- Based study
-
Sotiriou, C., S. Y. Neo, L. M. McShane, E. L. Korn, P. M. Long, A. Jazaeri, P. Martiat, S. B. Fox, A. L. Harris, and E. T. Liu. 2003. Breast cancer classification and prognosis based on gene expression profiles from a population- based study. Proc. Natl. Acad. Sci. USA 100:10393-10398.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 10393-10398
-
-
Sotiriou, C.1
Neo, S.Y.2
McShane, L.M.3
Korn, E.L.4
Long, P.M.5
Jazaeri, A.6
Martiat, P.7
Fox, S.B.8
Harris, A.L.9
Liu, E.T.10
-
62
-
-
33144462268
-
Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis
-
Sotiriou, C., P. Wirapati, S. Loi, A. Harris, S. Fox, J. Smeds, H. Nordgren, P. Farmer, V. Praz, B. Haibe-Kains, C. Desmedt, D. Larsimont, F. Cardoso, H. Peterse, D. Nuyten, M. Buyse, M. J. Van de Vijver, J. Bergh, M. Piccart, and M. Delorenzi. 2006. Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis. J. Natl. Cancer Inst. 98:262-272.
-
(2006)
J. Natl. Cancer Inst.
, vol.98
, pp. 262-272
-
-
Sotiriou, C.1
Wirapati, P.2
Loi, S.3
Harris, A.4
Fox, S.5
Smeds, J.6
Nordgren, H.7
Farmer, P.8
Praz, V.9
Haibe-Kains, B.10
Desmedt, C.11
Larsimont, D.12
Cardoso, F.13
Peterse, H.14
Nuyten, D.15
Buyse, M.16
Van De Vijver, M.J.17
Bergh, J.18
Piccart, M.19
Delorenzi, M.20
more..
-
63
-
-
20444494936
-
Interchromosomal associations between alternatively expressed loci
-
DOI 10.1038/nature03574
-
Spilianakis, C. G., M. D. Lalioti, T. Town, G. R. Lee, and R. A. Flavell. 2005. Interchromosomal associations between alternatively expressed loci. Nature 435:637-645. (Pubitemid 40825504)
-
(2005)
Nature
, vol.435
, Issue.7042
, pp. 637-645
-
-
Spilianakis, C.G.1
Lalioti, M.D.2
Town, T.3
Lee, G.R.4
Flavell, R.A.5
-
64
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
van de Vijver, M. J., Y. D. He, L. J. van't Veer, H. Dai, A. A. Hart, D. W. Voskuil, G. J. Schreiber, J. L. Peterse, C. Roberts, M. J. Marton, M. Parrish, D. Atsma, A. Witteveen, A. Glas, L. Delahaye, T. van der Velde, H. Bartelink, S. Rodenhuis, E. T. Rutgers, S. H. Friend, and R. Bernards. 2002. A gene-expression signature as a predictor of survival in breast cancer. N. Engl. J. Med. 347:1999-2009.
-
(2002)
N. Engl. J. Med.
, vol.347
, pp. 1999-2009
-
-
Van De Vijver, M.J.1
He, Y.D.2
Van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
Parrish, M.11
Atsma, D.12
Witteveen, A.13
Glas, A.14
Delahaye, L.15
Van Der Velde, T.16
Bartelink, H.17
Rodenhuis, S.18
Rutgers, E.T.19
Friend, S.H.20
Bernards, R.21
more..
-
65
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
DOI 10.1016/S0140-6736(05)17947-1
-
Wang, Y., J. G. Klijn, Y. Zhang, A. M. Sieuwerts, M. P. Look, F. Yang, D. Talantov, M. Timmermans, M. E. Meijer-van Gelder, J. Yu, T. Jatkoe, E. M. Berns, D. Atkins, and J. A. Foekens. 2005. Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 365:671-679. (Pubitemid 40260888)
-
(2005)
Lancet
, vol.365
, Issue.9460
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.M.2
Zhang, Y.3
Sieuwerts, A.M.4
Look, M.P.5
Yang, F.6
Talantov, D.7
Timmermans, M.8
Meijer-Van Gelder, M.E.9
Yu, J.10
Jatkoe, T.11
Berns, E.M.J.J.12
Atkins, D.13
Foekens, J.A.14
-
66
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West, M., C. Blanchette, H. Dressman, E. Huang, S. Ishida, R. Spang, H. Zuzan, J. A. Olson, Jr., J. R. Marks, and J. R. Nevins. 2001. Predicting the clinical status of human breast cancer by using gene expression profiles. Proc. Natl. Acad. Sci. USA 98:11462-11467.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11462-11467
-
-
West, M.1
Blanchette, C.2
Dressman, H.3
Huang, E.4
Ishida, S.5
Spang, R.6
Zuzan, H.7
Olson Jr., J.A.8
Marks, J.R.9
Nevins, J.R.10
-
67
-
-
0038313055
-
Specific protein methylation defects and gene expression perturbations in coactivator-associated arginine methyltransferase 1-deficient mice
-
Yadav, N., J. Lee, J. Kim, J. Shen, M. C. Hu, C. M. Aldaz, and M. T. Bedford. 2003. Specific protein methylation defects and gene expression perturbations in coactivator-associated arginine methyltransferase 1-deficient mice. Proc. Natl. Acad. Sci. USA 100:6464-6468.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6464-6468
-
-
Yadav, N.1
Lee, J.2
Kim, J.3
Shen, J.4
Hu, M.C.5
Aldaz, C.M.6
Bedford, M.T.7
-
68
-
-
33745215373
-
A modular analysis of breast cancer reveals a novel low-grade molecular signature in estrogen receptor-positive tumors
-
Yu, K., K. Ganesan, L. D. Miller, and P. Tan. 2006. A modular analysis of breast cancer reveals a novel low-grade molecular signature in estrogen receptor-positive tumors. Clin. Cancer Res. 12:3288-3296.
-
(2006)
Clin. Cancer Res.
, vol.12
, pp. 3288-3296
-
-
Yu, K.1
Ganesan, K.2
Miller, L.D.3
Tan, P.4
-
69
-
-
36549013619
-
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
-
Zeitlinger, J., A. Stark, M. Kellis, J. W. Hong, S. Nechaev, K. Adelman, M. Levine, and R. A. Young. 2007. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat. Genet. 39:1512-1516.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1512-1516
-
-
Zeitlinger, J.1
Stark, A.2
Kellis, M.3
Hong, J.W.4
Nechaev, S.5
Adelman, K.6
Levine, M.7
Young, R.A.8
-
70
-
-
2542454682
-
Different gene expression patterns in invasive lobular and ductal carcinomas of the breast
-
Zhao, H., A. Langerod, Y. Ji, K. W. Nowels, J. M. Nesland, R. Tibshirani, I. K. Bukholm, R. Karesen, D. Botstein, A. L. Borresen-Dale, and S. S. Jeffrey. 2004. Different gene expression patterns in invasive lobular and ductal carcinomas of the breast. Mol. Biol. Cell 15:2523-2536.
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 2523-2536
-
-
Zhao, H.1
Langerod, A.2
Ji, Y.3
Nowels, K.W.4
Nesland, J.M.5
Tibshirani, R.6
Bukholm, I.K.7
Karesen, R.8
Botstein, D.9
Borresen-Dale, A.L.10
Jeffrey, S.S.11
|