-
1
-
-
2642672835
-
Evolutionary origins of multidrug and drug-specific efflux pumps in bacteria
-
Saier, M. H., Jr., Paulsen, I. T., Sliwinski, M. K., Pao, S. S., Skurray, R. A., and Nikaido, H. (1998) Evolutionary origins of multidrug and drug-specific efflux pumps in bacteria FASEB J. 12, 265-274
-
(1998)
FASEB J.
, vol.12
, pp. 265-274
-
-
Saier Jr., M.H.1
Paulsen, I.T.2
Sliwinski, M.K.3
Pao, S.S.4
Skurray, R.A.5
Nikaido, H.6
-
2
-
-
0029845913
-
Multidrug efflux pumps of gram-negative bacteria
-
Nikaido, H. (1996) Multidrug efflux pumps of gram-negative bacteria J. Bacteriol. 178, 5853-5859
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5853-5859
-
-
Nikaido, H.1
-
3
-
-
0030023489
-
The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals
-
Ma, D., Alberti, M., Lynch, C., Nikaido, H., and Hearst, J. E. (1996) The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals Mol. Microbiol. 19, 101-112
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 101-112
-
-
Ma, D.1
Alberti, M.2
Lynch, C.3
Nikaido, H.4
Hearst, J.E.5
-
4
-
-
0033888307
-
Entry into and release of solvents by Escherichia coli in an organic-aqueous two-liquid-phase system and substrate specificity of the AcrAB-TolC solvent-extruding pump
-
Tsukagoshi, N. and Aono, R. (2000) Entry into and release of solvents by Escherichia coli in an organic-aqueous two-liquid-phase system and substrate specificity of the AcrAB-TolC solvent-extruding pump J. Bacteriol. 182, 4803-4810
-
(2000)
J. Bacteriol.
, vol.182
, pp. 4803-4810
-
-
Tsukagoshi, N.1
Aono, R.2
-
5
-
-
0030983818
-
Role of the acrAB locus in organic solvent tolerance mediated by expression of marA, soxS, or robA in Escherichia coli
-
White, D. G., Goldman, J. D., Demple, B., and Levy, S. B. (1997) Role of the acrAB locus in organic solvent tolerance mediated by expression of marA, soxS, or robA in Escherichia coli J. Bacteriol. 179, 6122-6126
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6122-6126
-
-
White, D.G.1
Goldman, J.D.2
Demple, B.3
Levy, S.B.4
-
6
-
-
77951074736
-
Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli
-
Takatsuka, Y., Chen, C., and Nikaido, H. (2010) Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli Proc. Natl. Acad. Sci. U.S.A. 107, 6559-6565
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 6559-6565
-
-
Takatsuka, Y.1
Chen, C.2
Nikaido, H.3
-
7
-
-
65249172043
-
Kinetic behavior of the major multidrug efflux pump AcrB of Escherichia coli
-
Nagano, K. and Nikaido, H. (2009) Kinetic behavior of the major multidrug efflux pump AcrB of Escherichia coli Proc. Natl. Acad. Sci. U.S.A. 106, 5854-5858
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 5854-5858
-
-
Nagano, K.1
Nikaido, H.2
-
8
-
-
0030796260
-
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: Application to open reading frame characterization
-
Link, A. J., Phillips, D., and Church, G. M. (1997) Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization J. Bacteriol. 179, 6228-6237
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6228-6237
-
-
Link, A.J.1
Phillips, D.2
Church, G.M.3
-
9
-
-
84874431455
-
Multidrug binding properties of the AcrB efflux pump characterized by molecular dynamics simulations
-
Vargiu, A. V. and Nikaido, H. (2012) Multidrug binding properties of the AcrB efflux pump characterized by molecular dynamics simulations Proc. Natl. Acad. Sci. U.S.A. 109, 20637-20642
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 20637-20642
-
-
Vargiu, A.V.1
Nikaido, H.2
-
10
-
-
76149120388
-
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
-
Trott, O. and Olson, A. J. (2010) AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading J. Comput. Chem. 31, 455-461
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
-
11
-
-
33846363597
-
Drug export pathway of multidrug exporter AcrB revealed by DARPin inhibitors
-
Sennhauser, G., Amstutz, P., Briand, C., Storchenegger, O., and Grutter, M. G. (2007) Drug export pathway of multidrug exporter AcrB revealed by DARPin inhibitors PLoS Biol. 5, e7
-
(2007)
PLoS Biol.
, vol.5
, pp. 7
-
-
Sennhauser, G.1
Amstutz, P.2
Briand, C.3
Storchenegger, O.4
Grutter, M.G.5
-
12
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: Visual molecular dynamics J. Mol. Graphics Modell. 14, 33-38
-
(1996)
J. Mol. Graphics Modell.
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
13
-
-
79960204167
-
Effect of the F610A mutation on substrate extrusion in the AcrB transporter: Explanation and rationale by molecular dynamics simulations
-
Vargiu, A. V., Collu, F., Schulz, R., Pos, K. M., Zacharias, M., Kleinekathofer, U., and Ruggerone, P. (2011) Effect of the F610A mutation on substrate extrusion in the AcrB transporter: explanation and rationale by molecular dynamics simulations J. Am. Chem. Soc. 133, 10704-10707
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 10704-10707
-
-
Vargiu, A.V.1
Collu, F.2
Schulz, R.3
Pos, K.M.4
Zacharias, M.5
Kleinekathofer, U.6
Ruggerone, P.7
-
14
-
-
0036889033
-
Substrate specificity of the RND-type multidrug efflux pumps AcrB and AcrD of Escherichia coli is determined predominantly by two large periplasmic loops
-
Elkins, C. A. and Nikaido, H. (2002) Substrate specificity of the RND-type multidrug efflux pumps AcrB and AcrD of Escherichia coli is determined predominantly by two large periplasmic loops J. Bacteriol. 184, 6490-6498
-
(2002)
J. Bacteriol.
, vol.184
, pp. 6490-6498
-
-
Elkins, C.A.1
Nikaido, H.2
-
15
-
-
0035162640
-
Identification and characterization of inhibitors of multidrug resistance efflux pumps in Pseudomonas aeruginosa: Novel agents for combination therapy
-
Lomovskaya, O., Warren, M. S., Lee, A., Galazzo, J., Fronko, R., Lee, M., Blais, J., Cho, D., Chamberland, S., Renau, T., Leger, R., Hecker, S., Watkins, W., Hoshino, K., Ishida, H., and Lee, V. J. (2001) Identification and characterization of inhibitors of multidrug resistance efflux pumps in Pseudomonas aeruginosa: novel agents for combination therapy Antimicrob. Agents Chemother. 45, 105-116
-
(2001)
Antimicrob. Agents Chemother.
, vol.45
, pp. 105-116
-
-
Lomovskaya, O.1
Warren, M.S.2
Lee, A.3
Galazzo, J.4
Fronko, R.5
Lee, M.6
Blais, J.7
Cho, D.8
Chamberland, S.9
Renau, T.10
Leger, R.11
Hecker, S.12
Watkins, W.13
Hoshino, K.14
Ishida, H.15
Lee, V.J.16
-
16
-
-
84875478948
-
The efflux inhibitor phenylalanine-arginine beta-naphthylamide (PAβN) permeabilizes the outer membrane of gram-negative bacteria
-
Lamers, R. P., Cavallari, J. F., and Burrows, L. L. (2013) The efflux inhibitor phenylalanine-arginine beta-naphthylamide (PAβN) permeabilizes the outer membrane of gram-negative bacteria PLoS One 8, e60666
-
(2013)
PLoS One
, vol.8
, pp. 60666
-
-
Lamers, R.P.1
Cavallari, J.F.2
Burrows, L.L.3
-
17
-
-
79954553031
-
Evaluation of multidrug efflux pump inhibitors by a new method using microfluidic channels
-
Matsumoto, Y., Hayama, K., Sakakihara, S., Nishino, K., Noji, H., Iino, R., and Yamaguchi, A. (2011) Evaluation of multidrug efflux pump inhibitors by a new method using microfluidic channels PLoS One 6, e18547
-
(2011)
PLoS One
, vol.6
, pp. 18547
-
-
Matsumoto, Y.1
Hayama, K.2
Sakakihara, S.3
Nishino, K.4
Noji, H.5
Iino, R.6
Yamaguchi, A.7
-
18
-
-
33644499476
-
Practical applications and feasibility of efflux pump inhibitors in the clinic-A vision for applied use
-
Lomovskaya, O. and Bostian, K. A. (2006) Practical applications and feasibility of efflux pump inhibitors in the clinic-a vision for applied use Biochem. Pharmacol. 71, 910-918
-
(2006)
Biochem. Pharmacol.
, vol.71
, pp. 910-918
-
-
Lomovskaya, O.1
Bostian, K.A.2
-
19
-
-
63049131979
-
Covalently linked trimer of the AcrB multidrug efflux pump provides support for the functional rotating mechanism
-
Takatsuka, Y. and Nikaido, H. (2009) Covalently linked trimer of the AcrB multidrug efflux pump provides support for the functional rotating mechanism J. Bacteriol. 191, 1729-1737
-
(2009)
J. Bacteriol.
, vol.191
, pp. 1729-1737
-
-
Takatsuka, Y.1
Nikaido, H.2
-
20
-
-
38349091489
-
Well-tempered metadynamics: A smoothly converging and tunable free-energy method
-
Barducci, A., Bussi, G., and Parrinello, M. (2008) Well-tempered metadynamics: A smoothly converging and tunable free-energy method Phys. Rev. Lett. 100, 020603
-
(2008)
Phys. Rev. Lett.
, vol.100
, pp. 020603
-
-
Barducci, A.1
Bussi, G.2
Parrinello, M.3
-
21
-
-
80051674975
-
Molecular motions in drug design: The coming age of the metadynamics method
-
Biarnes, X., Bongarzone, S., Vargiu, A. V., Carloni, P., and Ruggerone, P. (2011) Molecular motions in drug design: the coming age of the metadynamics method J. Comput.-Aided Mol. Des. 25, 395-402
-
(2011)
J. Comput.-Aided Mol. Des.
, vol.25
, pp. 395-402
-
-
Biarnes, X.1
Bongarzone, S.2
Vargiu, A.V.3
Carloni, P.4
Ruggerone, P.5
-
23
-
-
54549100470
-
Dissociation of minor groove binders from DNA: Insights from metadynamics simulations
-
Vargiu, A. V., Ruggerone, P., Magistrato, A., and Carloni, P. (2008) Dissociation of minor groove binders from DNA: insights from metadynamics simulations Nucleic Acids Res. 36, 5910-5921
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5910-5921
-
-
Vargiu, A.V.1
Ruggerone, P.2
Magistrato, A.3
Carloni, P.4
-
24
-
-
0030782511
-
Positively cooperative sites for drug transport by P-glycoprotein with distinct drug specificities
-
Shapiro, A. B. and Ling, V. (1997) Positively cooperative sites for drug transport by P-glycoprotein with distinct drug specificities Eur. J. Biochem. 250, 130-137
-
(1997)
Eur. J. Biochem.
, vol.250
, pp. 130-137
-
-
Shapiro, A.B.1
Ling, V.2
-
25
-
-
0033083015
-
Stimulation of P-glycoprotein-mediated drug transport by prazosin and progesterone. Evidence for a third drug-binding site
-
Shapiro, A. B., Fox, K., Lam, P., and Ling, V. (1999) Stimulation of P-glycoprotein-mediated drug transport by prazosin and progesterone. Evidence for a third drug-binding site Eur. J. Biochem. 259, 841-850
-
(1999)
Eur. J. Biochem.
, vol.259
, pp. 841-850
-
-
Shapiro, A.B.1
Fox, K.2
Lam, P.3
Ling, V.4
-
26
-
-
12144262818
-
Interaction of LDS-751 with P-glycoprotein and mapping of the location of the R drug binding site
-
Lugo, M. R. and Sharom, F. J. (2005) Interaction of LDS-751 with P-glycoprotein and mapping of the location of the R drug binding site Biochemistry 44, 643-655
-
(2005)
Biochemistry
, vol.44
, pp. 643-655
-
-
Lugo, M.R.1
Sharom, F.J.2
-
27
-
-
31844450741
-
On the putative co-transport of drugs by multidrug resistance proteins
-
Borst, P., Zelcer, N., van de Wetering, K., and Poolman, B. (2006) On the putative co-transport of drugs by multidrug resistance proteins FEBS Lett. 580, 1085-1093
-
(2006)
FEBS Lett.
, vol.580
, pp. 1085-1093
-
-
Borst, P.1
Zelcer, N.2
Van De Wetering, K.3
Poolman, B.4
-
28
-
-
0033862765
-
Communication between multiple drug binding sites on P-glycoprotein
-
Martin, C., Berridge, G., Higgins, C. F., Mistry, P., Charlton, P., and Callaghan, R. (2000) Communication between multiple drug binding sites on P-glycoprotein Mol. Pharmacol. 58, 624-632
-
(2000)
Mol. Pharmacol.
, vol.58
, pp. 624-632
-
-
Martin, C.1
Berridge, G.2
Higgins, C.F.3
Mistry, P.4
Charlton, P.5
Callaghan, R.6
-
29
-
-
33748670458
-
Crystal structures of a multidrug transporter reveal a functionally rotating mechanism
-
Murakami, S., Nakashima, R., Yamashita, E., Matsumoto, T., and Yamaguchi, A. (2006) Crystal structures of a multidrug transporter reveal a functionally rotating mechanism Nature 443, 173-179
-
(2006)
Nature
, vol.443
, pp. 173-179
-
-
Murakami, S.1
Nakashima, R.2
Yamashita, E.3
Matsumoto, T.4
Yamaguchi, A.5
-
30
-
-
33748310520
-
Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism
-
Seeger, M. A., Schiefner, A., Eicher, T., Verrey, F., Diederichs, K., and Pos, K. M. (2006) Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism Science 313, 1295-1298
-
(2006)
Science
, vol.313
, pp. 1295-1298
-
-
Seeger, M.A.1
Schiefner, A.2
Eicher, T.3
Verrey, F.4
Diederichs, K.5
Pos, K.M.6
-
31
-
-
78649344142
-
Substrate path in the AcrB multidrug efflux pump of Escherichia coli
-
Husain, F. and Nikaido, H. (2010) Substrate path in the AcrB multidrug efflux pump of Escherichia coli Mol. Microbiol. 78, 320-330
-
(2010)
Mol. Microbiol.
, vol.78
, pp. 320-330
-
-
Husain, F.1
Nikaido, H.2
-
32
-
-
25144504245
-
A periplasmic drug-binding site of the AcrB multidrug efflux pump: A crystallographic and site-directed mutagenesis study
-
Yu, E. W., Aires, J. R., McDermott, G., and Nikaido, H. (2005) A periplasmic drug-binding site of the AcrB multidrug efflux pump: a crystallographic and site-directed mutagenesis study J. Bacteriol. 187, 6804-6815
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6804-6815
-
-
Yu, E.W.1
Aires, J.R.2
McDermott, G.3
Nikaido, H.4
-
33
-
-
57049135864
-
The structure of the efflux pump AcrB in complex with bile acid
-
Drew, D., Klepsch, M. M., Newstead, S., Flaig, R., De Gier, J. W., Iwata, S., and Beis, K. (2008) The structure of the efflux pump AcrB in complex with bile acid Mol. Membr. Biol. 25, 677-682
-
(2008)
Mol. Membr. Biol.
, vol.25
, pp. 677-682
-
-
Drew, D.1
Klepsch, M.M.2
Newstead, S.3
Flaig, R.4
De Gier, J.W.5
Iwata, S.6
Beis, K.7
-
34
-
-
84879239912
-
Crystal structure of AcrB complexed with linezolid at 3.5 A resolution
-
Hung, L. W., Kim, H. B., Murakami, S., Gupta, G., Kim, C. Y., and Terwilliger, T. C. (2013) Crystal structure of AcrB complexed with linezolid at 3.5 A resolution J. Struct. Funct. Genomics 14, 71-75
-
(2013)
J. Struct. Funct. Genomics
, vol.14
, pp. 71-75
-
-
Hung, L.W.1
Kim, H.B.2
Murakami, S.3
Gupta, G.4
Kim, C.Y.5
Terwilliger, T.C.6
-
35
-
-
36749071555
-
Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist
-
Tornroth-Horsefield, S., Gourdon, P., Horsefield, R., Brive, L., Yamamoto, N., Mori, H., Snijder, A., and Neutze, R. (2007) Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist Structure 15, 1663-1673
-
(2007)
Structure
, vol.15
, pp. 1663-1673
-
-
Tornroth-Horsefield, S.1
Gourdon, P.2
Horsefield, R.3
Brive, L.4
Yamamoto, N.5
Mori, H.6
Snijder, A.7
Neutze, R.8
-
36
-
-
84859567740
-
Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop
-
Eicher, T., Cha, H. J., Seeger, M. A., Brandstatter, L., El-Delik, J., Bohnert, J. A., Kern, W. V., Verrey, F., Grutter, M. G., Diederichs, K., and Pos, K. M. (2012) Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop Proc. Natl. Acad. Sci. U.S.A. 109, 5687-5692
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 5687-5692
-
-
Eicher, T.1
Cha, H.J.2
Seeger, M.A.3
Brandstatter, L.4
El-Delik, J.5
Bohnert, J.A.6
Kern, W.V.7
Verrey, F.8
Grutter, M.G.9
Diederichs, K.10
Pos, K.M.11
-
37
-
-
84355166442
-
Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
-
Nakashima, R., Sakurai, K., Yamasaki, S., Nishino, K., and Yamaguchi, A. (2011) Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket Nature 480, 565-569
-
(2011)
Nature
, vol.480
, pp. 565-569
-
-
Nakashima, R.1
Sakurai, K.2
Yamasaki, S.3
Nishino, K.4
Yamaguchi, A.5
-
38
-
-
77951221725
-
Kinetic parameters of efflux of penicillins by the multidrug efflux transporter AcrAB-TolC of Escherichia coli
-
Lim, S. P. and Nikaido, H. (2010) Kinetic parameters of efflux of penicillins by the multidrug efflux transporter AcrAB-TolC of Escherichia coli Antimicrob. Agents Chemother. 54, 1800-1806
-
(2010)
Antimicrob. Agents Chemother.
, vol.54
, pp. 1800-1806
-
-
Lim, S.P.1
Nikaido, H.2
-
39
-
-
28144454423
-
Behaviour of small solutes and large drugs in a lipid bilayer from computer simulations
-
Bemporad, D., Luttmann, C., and Essex, J. W. (2005) Behaviour of small solutes and large drugs in a lipid bilayer from computer simulations Biochim. Biophys. Acta 1718, 1-21
-
(2005)
Biochim. Biophys. Acta
, vol.1718
, pp. 1-21
-
-
Bemporad, D.1
Luttmann, C.2
Essex, J.W.3
-
40
-
-
0026608845
-
Outer membranes of gram-negative bacteria are permeable to steroid probes
-
Plésiat, P. and Nikaido, H. (1992) Outer membranes of gram-negative bacteria are permeable to steroid probes Mol. Microbiol. 6, 1323-1333
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 1323-1333
-
-
Plésiat, P.1
Nikaido, H.2
-
41
-
-
0020597554
-
Porin channels in Escherichia coli: Studies with liposomes reconstituted from purified proteins
-
Nikaido, H. and Rosenberg, E. Y. (1983) Porin channels in Escherichia coli: studies with liposomes reconstituted from purified proteins J. Bacteriol. 153, 241-252
-
(1983)
J. Bacteriol.
, vol.153
, pp. 241-252
-
-
Nikaido, H.1
Rosenberg, E.Y.2
-
42
-
-
80755122853
-
Lactose permease and the alternating access mechanism
-
Smirnova, I., Kasho, V., and Kaback, H. R. (2011) Lactose permease and the alternating access mechanism Biochemistry 50, 9684-9693
-
(2011)
Biochemistry
, vol.50
, pp. 9684-9693
-
-
Smirnova, I.1
Kasho, V.2
Kaback, H.R.3
-
43
-
-
84888251078
-
RND efflux pumps: Structural information translated into function and inhibition mechanisms
-
Ruggerone, P., Murakami, S., Pos, K. M., and Vargiu, A. V. (2013) RND efflux pumps: structural information translated into function and inhibition mechanisms Curr. Top. Med. Chem. in press
-
(2013)
Curr. Top. Med. Chem.
-
-
Ruggerone, P.1
Murakami, S.2
Pos, K.M.3
Vargiu, A.V.4
|