메뉴 건너뛰기




Volumn 12, Issue 6, 2013, Pages 355-367

A practical guide to molecular dating

Author keywords

Age constraint; Confidence interval; Fossil calibration; Molecular dating; Relaxed clock; Uncertainty

Indexed keywords

CALIBRATION; CONFIDENCE INTERVAL; DATA ACQUISITION; DIVERGENCE; FOSSIL;

EID: 84887774902     PISSN: 16310683     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.crpv.2013.07.003     Document Type: Article
Times cited : (84)

References (97)
  • 2
    • 84877663836 scopus 로고    scopus 로고
    • Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics
    • Baele G., Li W.L.S., Drummond A.J., Suchard M.A., Lemey P. Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics. Mol. Biol. Evol. 2013, 30:239-243.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 239-243
    • Baele, G.1    Li, W.L.S.2    Drummond, A.J.3    Suchard, M.A.4    Lemey, P.5
  • 3
    • 21044456515 scopus 로고    scopus 로고
    • The age of the angiosperms: a molecular timescale without a clock
    • Bell C.D., Soltis D.E., Soltis P.S. The age of the angiosperms: a molecular timescale without a clock. Evolution 2005, 59:1245-1258.
    • (2005) Evolution , vol.59 , pp. 1245-1258
    • Bell, C.D.1    Soltis, D.E.2    Soltis, P.S.3
  • 4
    • 33845883023 scopus 로고    scopus 로고
    • Paleontological evidence to date the Tree of Life
    • Benton M.J., Donoghue P.C.J. Paleontological evidence to date the Tree of Life. Mol. Biol. Evol. 2007, 24:26-53.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 26-53
    • Benton, M.J.1    Donoghue, P.C.J.2
  • 5
    • 79952128500 scopus 로고    scopus 로고
    • Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards
    • Brandley M.C., Wang Y., Guo X., Montes de Oca A.N., Feria-Ortiz M., Hikida T., Ota H. Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards. Syst. Biol. 2011, 60:3-15.
    • (2011) Syst. Biol. , vol.60 , pp. 3-15
    • Brandley, M.C.1    Wang, Y.2    Guo, X.3    Montes de Oca, A.N.4    Feria-Ortiz, M.5    Hikida, T.6    Ota, H.7
  • 7
    • 72649096546 scopus 로고    scopus 로고
    • Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae)
    • Couvreur T.L.P., Franzke A., Al-Shehbaz I.A., Bakker F.T., Koch M.A., Mummenhoff K. Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae). Mol. Biol. Evol. 2010, 27:55-71.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 55-71
    • Couvreur, T.L.P.1    Franzke, A.2    Al-Shehbaz, I.A.3    Bakker, F.T.4    Koch, M.A.5    Mummenhoff, K.6
  • 10
    • 84866721202 scopus 로고    scopus 로고
    • The reconstructed evolutionary process with the fossil record
    • Didier G., Royer-carenzi M., Laurin M. The reconstructed evolutionary process with the fossil record. J. Theor. Biol. 2012, 315:26-37.
    • (2012) J. Theor. Biol. , vol.315 , pp. 26-37
    • Didier, G.1    Royer-carenzi, M.2    Laurin, M.3
  • 11
    • 34447333669 scopus 로고    scopus 로고
    • Rocks and clocks: calibrating the Tree of Life using fossils and molecules
    • Donoghue P.C.J., Benton M.J. Rocks and clocks: calibrating the Tree of Life using fossils and molecules. Trends Ecol. Evol. 2007, 22:424-431.
    • (2007) Trends Ecol. Evol. , vol.22 , pp. 424-431
    • Donoghue, P.C.J.1    Benton, M.J.2
  • 12
    • 7444237566 scopus 로고    scopus 로고
    • The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?
    • Douzery E.J.P., Snell E., a Bapteste E., Delsuc F., Philippe H. The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?. Proc. Natl Acad. Sci. U. S. A. 2004, 101:15386-15391.
    • (2004) Proc. Natl Acad. Sci. U. S. A. , vol.101 , pp. 15386-15391
    • Douzery, E.J.P.1    Snell, E.2    a Bapteste, E.3    Delsuc, F.4    Philippe, H.5
  • 13
    • 0027384019 scopus 로고
    • Phylogenies and angiosperm diversification
    • Doyle J.A., Donoghue M.J. Phylogenies and angiosperm diversification. Paleobiology 1993, 19:141-167.
    • (1993) Paleobiology , vol.19 , pp. 141-167
    • Doyle, J.A.1    Donoghue, M.J.2
  • 14
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 17
    • 72849125317 scopus 로고    scopus 로고
    • Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies
    • FitzJohn R.G., Maddison W.P., Otto S.P. Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies. Syst. Biol. 2009, 58:595-611.
    • (2009) Syst. Biol. , vol.58 , pp. 595-611
    • FitzJohn, R.G.1    Maddison, W.P.2    Otto, S.P.3
  • 18
    • 70349599032 scopus 로고    scopus 로고
    • Calibrating the Tree of Life: fossils, molecules and evolutionary timescales
    • Forest F. Calibrating the Tree of Life: fossils, molecules and evolutionary timescales. Ann. Bot. (Lond) 2009, 104:789-794.
    • (2009) Ann. Bot. (Lond) , vol.104 , pp. 789-794
    • Forest, F.1
  • 21
    • 62549098565 scopus 로고    scopus 로고
    • The origin of a mega-diverse genus: dating Begonia (Begoniaceae) using alternative datasets, calibrations and relaxed clock methods
    • Goodall-Copestake W.P., Harris D.J., Hollingsworth P.M. The origin of a mega-diverse genus: dating Begonia (Begoniaceae) using alternative datasets, calibrations and relaxed clock methods. Botanical J.Linnean Society 2009, 159:363-380.
    • (2009) Botanical J.Linnean Society , vol.159 , pp. 363-380
    • Goodall-Copestake, W.P.1    Harris, D.J.2    Hollingsworth, P.M.3
  • 22
    • 1642554676 scopus 로고    scopus 로고
    • Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision
    • Graur D., Martin W. Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision. Trends Genet. 2004, 20:80-86.
    • (2004) Trends Genet. , vol.20 , pp. 80-86
    • Graur, D.1    Martin, W.2
  • 23
    • 84871837020 scopus 로고    scopus 로고
    • From trajectories to averages: an improved description of the heterogeneity of substitution rates along lineages
    • Guindon S. From trajectories to averages: an improved description of the heterogeneity of substitution rates along lineages. Syst. Biol. 2013, 62:22-34.
    • (2013) Syst. Biol. , vol.62 , pp. 22-34
    • Guindon, S.1
  • 24
    • 84865256173 scopus 로고    scopus 로고
    • A hierarchical Bayesian model for calibrating estimates of species divergence times
    • Heath T.A. A hierarchical Bayesian model for calibrating estimates of species divergence times. Syst. Biol. 2012, 61:793-809.
    • (2012) Syst. Biol. , vol.61 , pp. 793-809
    • Heath, T.A.1
  • 25
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: a public knowledge-base of divergence times among organisms
    • Hedges S.B., Dudley J., Kumar S. TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics 2006, 22:2971-2972.
    • (2006) Bioinformatics , vol.22 , pp. 2971-2972
    • Hedges, S.B.1    Dudley, J.2    Kumar, S.3
  • 26
    • 42449107407 scopus 로고    scopus 로고
    • W(h)ither fossils? Studying morphological character evolution in the age of molecular sequences
    • Hermsen E.J., Hendricks J.R. W(h)ither fossils? Studying morphological character evolution in the age of molecular sequences. Ann. Missouri Botanical Garden 2008, 95:72-100.
    • (2008) Ann. Missouri Botanical Garden , vol.95 , pp. 72-100
    • Hermsen, E.J.1    Hendricks, J.R.2
  • 27
    • 34347329101 scopus 로고    scopus 로고
    • Calibrating molecular estimates of substitution rates and divergence times in birds
    • Ho S.Y.W. Calibrating molecular estimates of substitution rates and divergence times in birds. J. Avian Biol. 2007, 38:409-414.
    • (2007) J. Avian Biol. , vol.38 , pp. 409-414
    • Ho, S.Y.W.1
  • 28
    • 67649133122 scopus 로고    scopus 로고
    • An examination of phylogenetic models of substitution rate variation among lineages
    • Ho S.Y.W. An examination of phylogenetic models of substitution rate variation among lineages. Biol. Lett. 2009, 5:421-424.
    • (2009) Biol. Lett. , vol.5 , pp. 421-424
    • Ho, S.Y.W.1
  • 29
    • 84877132801 scopus 로고    scopus 로고
    • The insect molecular clock
    • Ho S.Y.W., Lo N. The insect molecular clock. Aust. J. Entomol. 2013, 52:101-105.
    • (2013) Aust. J. Entomol. , vol.52 , pp. 101-105
    • Ho, S.Y.W.1    Lo, N.2
  • 30
    • 70350103638 scopus 로고    scopus 로고
    • Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times
    • Ho S.Y.W., Phillips M.J. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Syst. Biol. 2009, 58:367-380.
    • (2009) Syst. Biol. , vol.58 , pp. 367-380
    • Ho, S.Y.W.1    Phillips, M.J.2
  • 31
    • 45449120082 scopus 로고    scopus 로고
    • The effect of inappropriate calibration: three case studies in molecular ecology
    • Ho S.Y.W., Saarma U., Barnett R., Haile J., Shapiro B. The effect of inappropriate calibration: three case studies in molecular ecology. PLoS One 2008, 3:e1615.
    • (2008) PLoS One , vol.3
    • Ho, S.Y.W.1    Saarma, U.2    Barnett, R.3    Haile, J.4    Shapiro, B.5
  • 32
    • 72049121650 scopus 로고    scopus 로고
    • The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times
    • Inoue J., Donoghue P.C.J., Yang Z. The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times. Syst. Biol. 2010, 59:74-89.
    • (2010) Syst. Biol. , vol.59 , pp. 74-89
    • Inoue, J.1    Donoghue, P.C.J.2    Yang, Z.3
  • 34
    • 22944437097 scopus 로고    scopus 로고
    • Molecular clocks: four decades of evolution
    • Kumar S. Molecular clocks: four decades of evolution. Nat. Rev. Genet. 2005, 6:654-662.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 654-662
    • Kumar, S.1
  • 35
    • 79960130696 scopus 로고    scopus 로고
    • TimeTree2: species divergence times on the iPhone
    • Kumar S., Hedges S.B. TimeTree2: species divergence times on the iPhone. Bioinformatics 2011, 27:2023-2024.
    • (2011) Bioinformatics , vol.27 , pp. 2023-2024
    • Kumar, S.1    Hedges, S.B.2
  • 36
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot N., Lepage T., Blanquart S. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 2009, 25:2286-2288.
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 37
    • 84876122425 scopus 로고    scopus 로고
    • Recent progress in paleontological methods for dating the Tree of Life
    • Laurin M. Recent progress in paleontological methods for dating the Tree of Life. Front. Genet. 2012, 3:130.
    • (2012) Front. Genet. , vol.3 , pp. 130
    • Laurin, M.1
  • 38
    • 60349127526 scopus 로고    scopus 로고
    • Phylogenetic uncertainty and molecular clock calibrations: a case study of legless lizards (Pygopodidae, Gekkota)
    • Lee M.S.Y., Oliver P.M., Hutchinson M.N. Phylogenetic uncertainty and molecular clock calibrations: a case study of legless lizards (Pygopodidae, Gekkota). Mol. Phylogenet. Evol. 2009, 50:661-666.
    • (2009) Mol. Phylogenet. Evol. , vol.50 , pp. 661-666
    • Lee, M.S.Y.1    Oliver, P.M.2    Hutchinson, M.N.3
  • 39
    • 67449163699 scopus 로고    scopus 로고
    • The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
    • Lemmon A.R., Brown J.M., Stanger-Hall K., Lemmon E.M. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Syst. Biol. 2009, 58:130-145.
    • (2009) Syst. Biol. , vol.58 , pp. 130-145
    • Lemmon, A.R.1    Brown, J.M.2    Stanger-Hall, K.3    Lemmon, E.M.4
  • 40
  • 41
    • 0035527396 scopus 로고    scopus 로고
    • A likelihood approach to estimating phylogeny from discrete morphological character data
    • Lewis P.O. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 2001, 50:913-925.
    • (2001) Syst. Biol. , vol.50 , pp. 913-925
    • Lewis, P.O.1
  • 42
    • 84862908923 scopus 로고    scopus 로고
    • Model averaging and Bayes Factor calculation of relaxed molecular clocks in Bayesian phylogenetics
    • Li W.L.S., Drummond A.J. Model averaging and Bayes Factor calculation of relaxed molecular clocks in Bayesian phylogenetics. Mol. Biol. Evol. 2012, 29:751-761.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 751-761
    • Li, W.L.S.1    Drummond, A.J.2
  • 43
    • 0038158142 scopus 로고    scopus 로고
    • The radiation of the Cape flora, southern Africa
    • Linder H.P. The radiation of the Cape flora, southern Africa. Biol. Rev. 2003, 78:597-638.
    • (2003) Biol. Rev. , vol.78 , pp. 597-638
    • Linder, H.P.1
  • 44
    • 4944255292 scopus 로고    scopus 로고
    • Dating lineages: molecular and paleontological approaches to the temporal framework of clades
    • Magallón S.A. Dating lineages: molecular and paleontological approaches to the temporal framework of clades. Int. J. Plant Sci. 2004, 165:S7-S21.
    • (2004) Int. J. Plant Sci. , vol.165
    • Magallón, S.A.1
  • 45
    • 77953773178 scopus 로고    scopus 로고
    • Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms
    • Magallón S. Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms. Syst. Biol. 2010, 59:384-399.
    • (2010) Syst. Biol. , vol.59 , pp. 384-399
    • Magallón, S.1
  • 46
    • 60249100615 scopus 로고    scopus 로고
    • Angiosperm diversification through time
    • Magallón S., Castillo A. Angiosperm diversification through time. Am. J. Bot. 2009, 96:349-365.
    • (2009) Am. J. Bot. , vol.96 , pp. 349-365
    • Magallón, S.1    Castillo, A.2
  • 47
    • 0034765180 scopus 로고    scopus 로고
    • Absolute diversification rates in angiosperm clades
    • Magallón S., Sanderson M.J. Absolute diversification rates in angiosperm clades. Evolution 2001, 55:1762-1780.
    • (2001) Evolution , vol.55 , pp. 1762-1780
    • Magallón, S.1    Sanderson, M.J.2
  • 48
    • 24644519796 scopus 로고    scopus 로고
    • Angiosperm divergence times: the effect of genes, codon positions, and time constraints
    • Magallón S.A., Sanderson M.J. Angiosperm divergence times: the effect of genes, codon positions, and time constraints. Evolution 2005, 59:1653-1670.
    • (2005) Evolution , vol.59 , pp. 1653-1670
    • Magallón, S.A.1    Sanderson, M.J.2
  • 49
    • 84874918225 scopus 로고    scopus 로고
    • Land plant evolutionary timeline: gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates
    • Magallón S., Hilu K.W., Quandt D. Land plant evolutionary timeline: gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates. Am. J. Bot. 2013, 100:556-573.
    • (2013) Am. J. Bot. , vol.100 , pp. 556-573
    • Magallón, S.1    Hilu, K.W.2    Quandt, D.3
  • 50
    • 34249739745 scopus 로고    scopus 로고
    • Fossils, molecules, divergence times, and the origin of lissamphibians
    • Marjanović D., Laurin M. Fossils, molecules, divergence times, and the origin of lissamphibians. Syst. Biol. 2007, 56:369-388.
    • (2007) Syst. Biol. , vol.56 , pp. 369-388
    • Marjanović, D.1    Laurin, M.2
  • 51
    • 43949092742 scopus 로고    scopus 로고
    • A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points
    • Marshall C.R. A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points. Am. Nat. 2008, 171:726-742.
    • (2008) Am. Nat. , vol.171 , pp. 726-742
    • Marshall, C.R.1
  • 55
    • 42049110943 scopus 로고    scopus 로고
    • How to summarize estimates of ancestral divergence times
    • Morrison D.A. How to summarize estimates of ancestral divergence times. Evol. Bioinf. 2008, 4:75-95.
    • (2008) Evol. Bioinf. , vol.4 , pp. 75-95
    • Morrison, D.A.1
  • 57
    • 84872600487 scopus 로고    scopus 로고
    • Evolutionary inferences from phylogenies: a review of methods
    • O'Meara B.C. Evolutionary inferences from phylogenies: a review of methods. Annu. Rev. Ecol. Evo. Syst. 2012, 43:267-285.
    • (2012) Annu. Rev. Ecol. Evo. Syst. , vol.43 , pp. 267-285
    • O'Meara, B.C.1
  • 58
    • 0033613376 scopus 로고    scopus 로고
    • Inferring the historical patterns of biological evolution
    • Pagel M. Inferring the historical patterns of biological evolution. Nature 1999, 401:877-884.
    • (1999) Nature , vol.401 , pp. 877-884
    • Pagel, M.1
  • 59
    • 84877929456 scopus 로고    scopus 로고
    • Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion
    • Paradis E. Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion. Mol. Phylogenet. Evol. 2013, 67:436-444.
    • (2013) Mol. Phylogenet. Evol. , vol.67 , pp. 436-444
    • Paradis, E.1
  • 62
    • 67349118917 scopus 로고    scopus 로고
    • Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny
    • Phillips M.J. Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny. Gene 2009, 441:132-140.
    • (2009) Gene , vol.441 , pp. 132-140
    • Phillips, M.J.1
  • 63
    • 33947245620 scopus 로고    scopus 로고
    • Dates from the molecular clock: how wrong can we be?
    • Pulquério M.J.F., Nichols R.A. Dates from the molecular clock: how wrong can we be?. Trends Ecol. Evol. 2007, 22:180-184.
    • (2007) Trends Ecol. Evol. , vol.22 , pp. 180-184
    • Pulquério, M.J.F.1    Nichols, R.A.2
  • 64
    • 79959381301 scopus 로고    scopus 로고
    • Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia
    • Pyron R.A. Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia. Syst. Biol. 2011, 60:466-481.
    • (2011) Syst. Biol. , vol.60 , pp. 466-481
    • Pyron, R.A.1
  • 65
    • 79952176159 scopus 로고    scopus 로고
    • University of Oxford, Oxford, UK
    • Rambaut A., Drummond A.J. Tracer, version 1.5 2007, University of Oxford, Oxford, UK, (http://tree.bio.ed.ac.uk/software/tracer/).
    • (2007) Tracer, version 1.5
    • Rambaut, A.1    Drummond, A.J.2
  • 67
    • 47749135700 scopus 로고    scopus 로고
    • Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis
    • Ree R.H., Smith S.A. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 2008, 57:4-14.
    • (2008) Syst. Biol. , vol.57 , pp. 4-14
    • Ree, R.H.1    Smith, S.A.2
  • 68
    • 27644548127 scopus 로고    scopus 로고
    • Relaxed molecular clocks for dating historical plant dispersal events
    • Renner S. Relaxed molecular clocks for dating historical plant dispersal events. Trends Plant Sci. 2005, 10:550-558.
    • (2005) Trends Plant Sci. , vol.10 , pp. 550-558
    • Renner, S.1
  • 71
    • 84871842306 scopus 로고    scopus 로고
    • Impact of missing data on phylogenies inferred from empirical phylogenomic data sets
    • Roure B., Baurain D., Philippe H. Impact of missing data on phylogenies inferred from empirical phylogenomic data sets. Mol. Biol. Evol. 2013, 30:197-214.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 197-214
    • Roure, B.1    Baurain, D.2    Philippe, H.3
  • 72
    • 78651466770 scopus 로고    scopus 로고
    • Phylogenetic relationships of the Cretaceous frog Beelzebufo from Madagascar and the placement of fossil constraints based on temporal and phylogenetic evidence
    • Ruane S., Pyron R.A., Burbrink F.T. Phylogenetic relationships of the Cretaceous frog Beelzebufo from Madagascar and the placement of fossil constraints based on temporal and phylogenetic evidence. J. Evol. Biol. 2011, 24:274-285.
    • (2011) J. Evol. Biol. , vol.24 , pp. 274-285
    • Ruane, S.1    Pyron, R.A.2    Burbrink, F.T.3
  • 73
    • 33645030825 scopus 로고    scopus 로고
    • Molecular dating of phylogenetic trees: a brief review of current methods that estimate divergence times
    • Rutschmann F. Molecular dating of phylogenetic trees: a brief review of current methods that estimate divergence times. Divers. Distribut. 2006, 12:35-48.
    • (2006) Divers. Distribut. , vol.12 , pp. 35-48
    • Rutschmann, F.1
  • 74
    • 34547468349 scopus 로고    scopus 로고
    • Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points
    • Rutschmann F., Eriksson T., Salim K.A., Conti E. Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points. Syst. Biol. 2007, 56:591-608.
    • (2007) Syst. Biol. , vol.56 , pp. 591-608
    • Rutschmann, F.1    Eriksson, T.2    Salim, K.A.3    Conti, E.4
  • 75
    • 0030773749 scopus 로고    scopus 로고
    • A nonparametric approach to estimating divergence times in the absence of rate constancy
    • Sanderson M.J. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 1997, 14:1218-1231.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1218-1231
    • Sanderson, M.J.1
  • 76
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach
    • Sanderson M.J. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 2002, 19:101-109.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 101-109
    • Sanderson, M.J.1
  • 77
    • 0037314098 scopus 로고    scopus 로고
    • R8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
    • Sanderson M.J. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 2003, 19:301-302.
    • (2003) Bioinformatics , vol.19 , pp. 301-302
    • Sanderson, M.J.1
  • 81
    • 77956552647 scopus 로고    scopus 로고
    • Effects of substitution models on divergence time estimates: simulations and an empirical study of model uncertainty using Cornales
    • Schenk J.J., Hufford L. Effects of substitution models on divergence time estimates: simulations and an empirical study of model uncertainty using Cornales. Syst. Bot. 2010, 35:578-592.
    • (2010) Syst. Bot. , vol.35 , pp. 578-592
    • Schenk, J.J.1    Hufford, L.2
  • 82
    • 84870458929 scopus 로고    scopus 로고
    • TreePL: divergence time estimation using penalized likelihood for large phylogenies
    • Smith S.A., O'Meara B.C. treePL: divergence time estimation using penalized likelihood for large phylogenies. Bioinformatics 2012, 28:2689-2690.
    • (2012) Bioinformatics , vol.28 , pp. 2689-2690
    • Smith, S.A.1    O'Meara, B.C.2
  • 83
    • 77950543389 scopus 로고    scopus 로고
    • An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants
    • Smith S.A., Beaulieu J.M., Donoghue M.J. An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants. Proc. Natl Acad. Sci. U. S. A. 2010, 107:5897-6590.
    • (2010) Proc. Natl Acad. Sci. U. S. A. , vol.107 , pp. 5897-6590
    • Smith, S.A.1    Beaulieu, J.M.2    Donoghue, M.J.3
  • 84
    • 79955018524 scopus 로고    scopus 로고
    • Mammalian phylogeny reveals recent diversification rate shifts
    • Stadler T. Mammalian phylogeny reveals recent diversification rate shifts. Proc. Natl Acad. Sci. U. S. A. 2011, 108:6187-6192.
    • (2011) Proc. Natl Acad. Sci. U. S. A. , vol.108 , pp. 6187-6192
    • Stadler, T.1
  • 85
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 86
    • 84887723699 scopus 로고    scopus 로고
    • PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4
    • Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.
    • (2002)
    • Swofford, D.L.1
  • 87
    • 0037129204 scopus 로고    scopus 로고
    • Using the fossil record to estimate the age of the last common ancestor of extant primates
    • Tavaré S., Marshall C.R., Will O., Soligo C., Martin R.D. Using the fossil record to estimate the age of the last common ancestor of extant primates. Nature 2002, 416:726-729.
    • (2002) Nature , vol.416 , pp. 726-729
    • Tavaré, S.1    Marshall, C.R.2    Will, O.3    Soligo, C.4    Martin, R.D.5
  • 88
    • 51749095104 scopus 로고    scopus 로고
    • Phylocom: software for the analysis of phylogenetic community structure and trait evolution
    • Webb C.O., Ackerly D.D., Kembel S.W. Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 2008, 24:2098-2100.
    • (2008) Bioinformatics , vol.24 , pp. 2098-2100
    • Webb, C.O.1    Ackerly, D.D.2    Kembel, S.W.3
  • 89
    • 43049101093 scopus 로고    scopus 로고
    • Calibrating the avian molecular clock
    • Weir J.T., Schluter D. Calibrating the avian molecular clock. Mol. Ecol. 2008, 17:2321-2328.
    • (2008) Mol. Ecol. , vol.17 , pp. 2321-2328
    • Weir, J.T.1    Schluter, D.2
  • 90
    • 20144362109 scopus 로고    scopus 로고
    • Molecular dating when rates vary
    • Welch J.J., Bromham L. Molecular dating when rates vary. Trends Ecol. Evol. 2005, 20:320-327.
    • (2005) Trends Ecol. Evol. , vol.20 , pp. 320-327
    • Welch, J.J.1    Bromham, L.2
  • 91
    • 80052006478 scopus 로고    scopus 로고
    • Missing data in phylogenetic analysis: reconciling results from simulations and empirical data
    • Wiens J.J., Morrill M.C. Missing data in phylogenetic analysis: reconciling results from simulations and empirical data. Syst. Biol. 2011, 60:719-731.
    • (2011) Syst. Biol. , vol.60 , pp. 719-731
    • Wiens, J.J.1    Morrill, M.C.2
  • 93
    • 84873581687 scopus 로고    scopus 로고
    • Treating fossils as terminal taxa in divergence time estimation reveals ancient vicariance patterns in the palpimanoid spiders
    • Wood H.M., Matzke N.J., Gillespie R.G., Griswold C.E. Treating fossils as terminal taxa in divergence time estimation reveals ancient vicariance patterns in the palpimanoid spiders. Syst. Biol. 2013, 62:264-284.
    • (2013) Syst. Biol. , vol.62 , pp. 264-284
    • Wood, H.M.1    Matzke, N.J.2    Gillespie, R.G.3    Griswold, C.E.4
  • 94
    • 79951566251 scopus 로고    scopus 로고
    • Improving marginal likelihood estimation for Bayesian phylogenetic model selection
    • Xie W., Lewis P.O., Fan Y., Kuo L., Chen M.-H. Improving marginal likelihood estimation for Bayesian phylogenetic model selection. Syst. Biol. 2011, 60:150-160.
    • (2011) Syst. Biol. , vol.60 , pp. 150-160
    • Xie, W.1    Lewis, P.O.2    Fan, Y.3    Kuo, L.4    Chen, M.-H.5
  • 95
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 96
    • 28944451210 scopus 로고    scopus 로고
    • Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
    • Yang Z., Rannala B. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Mol. Biol. Evol. 2006, 23:212-226.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 212-226
    • Yang, Z.1    Rannala, B.2
  • 97
    • 0002331493 scopus 로고
    • Molecular disease, evolution, and genetic heterogeneity
    • Academic Press, New York, M. Kasha, B. Pullman (Eds.)
    • Zuckerkandl E., Pauling L. Molecular disease, evolution, and genetic heterogeneity. Horizons in Biochemistry 1962, 189-225. Academic Press, New York. M. Kasha, B. Pullman (Eds.).
    • (1962) Horizons in Biochemistry , pp. 189-225
    • Zuckerkandl, E.1    Pauling, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.