-
1
-
-
33846839390
-
Bayesian estimation of concordance among gene trees
-
Ané C., Larget B., Baum D.A., Smith S.D., Rokas A. 2007. Bayesian estimation of concordance among gene trees. Mol. Biol. Evol. 24: 412-426.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 412-426
-
-
Ané, C.1
Larget, B.2
Baum, D.A.3
Smith, S.D.4
Rokas, A.5
-
2
-
-
0000708831
-
Mixtures of Dirichlet processes with applications to non-parametric problems
-
Antoniak C.E. 1974. Mixtures of Dirichlet processes with applications to non-parametric problems. Ann. Stat. 2:1152-1174.
-
(1974)
Ann. Stat.
, vol.2
, pp. 1152-1174
-
-
Antoniak, C.E.1
-
3
-
-
77953131796
-
Fourteen nuclear genes provide phylogenetic resolution for diffcult nodes in the turtle tree of life
-
Barley A.J., Spinks P.Q., Thomson R.C., Shaffer H.B. 2010. Fourteen nuclear genes provide phylogenetic resolution for diffcult nodes in the turtle tree of life. Mol. Phylogenet. Evol. 55:1189-1194.
-
(2010)
Mol. Phylogenet. Evol.
, vol.55
, pp. 1189-1194
-
-
Barley, A.J.1
Spinks, P.Q.2
Thomson, R.C.3
Shaffer, H.B.4
-
4
-
-
0038518200
-
Dating the tree of life
-
Benton M.J., Ayala F.J. 2003. Dating the tree of life. Science. 300: 1698-1700.
-
(2003)
Science
, vol.300
, pp. 1698-1700
-
-
Benton, M.J.1
Ayala, F.J.2
-
5
-
-
33845883023
-
Paleontological evidence to date the tree of life
-
Benton M.J., Donoghue P.C.J. 2007. Paleontological evidence to date the tree of life. Mol. Biol. Evol. 24:26-53.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 26-53
-
-
Benton, M.J.1
Donoghue, P.C.J.2
-
6
-
-
0031224811
-
Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis
-
Brochu C.A. 1997. Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis. Syst. Biol. 46:479-522.
-
(1997)
Syst. Biol.
, vol.46
, pp. 479-522
-
-
Brochu, C.A.1
-
8
-
-
79959483593
-
Integrating fossil preservation biases in the selection of calibrations for molecular divergence time estimation
-
Dornburg A., Beaulieu J.M., Oliver J.C., Near T.J. 2011. Integrating fossil preservation biases in the selection of calibrations for molecular divergence time estimation. Syst. Biol. 60:519-527.
-
(2011)
Syst. Biol.
, vol.60
, pp. 519-527
-
-
Dornburg, A.1
Beaulieu, J.M.2
Oliver, J.C.3
Near, T.J.4
-
10
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
11
-
-
77956488734
-
Bayesian random local clocks, or one rate to rule them all
-
Drummond A.J., Suchard M.A. 2010. Bayesian random local clocks, or one rate to rule them all. BMC Biol. 8:114.
-
(2010)
BMC Biol
, vol.8
, pp. 114
-
-
Drummond, A.J.1
Suchard, M.A.2
-
12
-
-
64749085618
-
Phylogeny and biogeography of Alangiaceae (Cornales) inferred from DNA sequences, morphology, and fossils
-
Feng C.-M., Manchester S.R., Xiang Q.-Y. 2009. Phylogeny and biogeography of Alangiaceae (Cornales) inferred from DNA sequences, morphology, and fossils. Mol. Phylogenet. Evol. 51: 201-214.
-
(2009)
Mol. Phylogenet. Evol.
, vol.51
, pp. 201-214
-
-
Feng, C.-M.1
Manchester, S.R.2
Xiang, Q.-Y.3
-
13
-
-
0001120413
-
A Bayesian analysis of some nonparametric problems
-
Ferguson T.S. 1973. A Bayesian analysis of some nonparametric problems. Ann. Stat. 1:209-230.
-
(1973)
Ann. Stat.
, vol.1
, pp. 209-230
-
-
Ferguson, T.S.1
-
14
-
-
42449137071
-
Selection of fossils for calibration of molecular dating models
-
Gandolfo M.A., Nixon K.C., Crepet W.L. 2008. Selection of fossils for calibration of molecular dating models. Ann. Mo. Bot. Gard. 95:34-42.
-
(2008)
Ann. Mo. Bot. Gard.
, vol.95
, pp. 34-42
-
-
Gandolfo, M.A.1
Nixon, K.C.2
Crepet, W.L.3
-
15
-
-
48049107322
-
The conditioned reconstructed process
-
Gernhard T. 2008. The conditioned reconstructed process. J. Theor. Biol. 253:769-778.
-
(2008)
J. Theor. Biol.
, vol.253
, pp. 769-778
-
-
Gernhard, T.1
-
16
-
-
1642554676
-
Reading the entrails of chickens: Molecular timescales of evolution and the illusion of precision
-
Graur D., Martin W. 2004. Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision. Trends Genet. 20:80-86.
-
(2004)
Trends Genet
, vol.20
, pp. 80-86
-
-
Graur, D.1
Martin, W.2
-
17
-
-
77953743320
-
Sampling trees from evolutionary models
-
Hartmann K., Wong D., Stadler T. 2010. Sampling trees from evolutionary models. Syst. Biol. 59:465-476.
-
(2010)
Syst. Biol.
, vol.59
, pp. 465-476
-
-
Hartmann, K.1
Wong, D.2
Stadler, T.3
-
18
-
-
38249007654
-
Estimation of branching dates among primates bymolecular clocksof nuclear DNA which slowed down in Hominoidea
-
Hasegawa M., Kishino H., Yano T. 1989. Estimation of branching dates among primates bymolecular clocksof nuclear DNA which slowed down in Hominoidea. J. Hum. Evol. 18:461-476.
-
(1989)
J. Hum. Evol.
, vol.18
, pp. 461-476
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
19
-
-
77956890234
-
Monte Carlo sampling methods using Markov chains and their applications
-
Hastings W.K. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika. 57:97-109.
-
(1970)
Biometrika
, vol.57
, pp. 97-109
-
-
Hastings, W.K.1
-
20
-
-
84857198898
-
A Dirichlet process prior for estimating lineage-specifc substitution rates
-
Heath T.A., Holder M.T., Huelsenbeck J.P. 2012. A Dirichlet process prior for estimating lineage-specifc substitution rates. Mol. Biol. Evol. 29:939-955.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 939-955
-
-
Heath, T.A.1
Holder, M.T.2
Huelsenbeck, J.P.3
-
21
-
-
1942422549
-
Precision of molecular time estimates
-
Hedges S.B., Kumar S. 2004. Precision of molecular time estimates. Trends Genet. 20:242-247.
-
(2004)
Trends Genet
, vol.20
, pp. 242-247
-
-
Hedges, S.B.1
Kumar, S.2
-
22
-
-
84555188625
-
Calibrated tree priors for relaxed phylogenetics and divergence time estimation
-
Heled J., Drummond A.J. 2012. Calibrated tree priors for relaxed phylogenetics and divergence time estimation. Syst. Biol. 61: 138-149.
-
(2012)
Syst. Biol.
, vol.61
, pp. 138-149
-
-
Heled, J.1
Drummond, A.J.2
-
23
-
-
34347329101
-
Calibrating molecular estimates of substitution rates and divergence times in birds
-
Ho S.W.Y. 2007. Calibrating molecular estimates of substitution rates and divergence times in birds. J. Avian Biol. 38:409-414.
-
(2007)
J. Avian Biol.
, vol.38
, pp. 409-414
-
-
Ho, S.W.Y.1
-
24
-
-
70350103638
-
Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times
-
Ho S.Y.W., Phillips M.J. 2009. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Syst. Biol. 58:367-380.
-
(2009)
Syst. Biol.
, vol.58
, pp. 367-380
-
-
Ho, S.Y.W.1
Phillips, M.J.2
-
25
-
-
34249066206
-
Inference of population structure under a Dirichlet process model
-
Huelsenbeck J.P., Andolfatto P. 2007. Inference of population structure under a Dirichlet process model. Genetics. 175:1787-1802.
-
(2007)
Genetics
, vol.175
, pp. 1787-1802
-
-
Huelsenbeck, J.P.1
Andolfatto, P.2
-
26
-
-
33646586721
-
A Dirich-let process model for detecting positive selection in protein-coding DNA sequences
-
Huelsenbeck J.P., Jain S., Frost S.W.D., Pond S.L.K. 2006. A Dirich-let process model for detecting positive selection in protein-coding DNA sequences. Proc. Natl. Acad. Sci. U.S.A. 103:6263-6268.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 6263-6268
-
-
Huelsenbeck, J.P.1
Jain, S.2
Frost, S.W.D.3
Pond, S.L.K.4
-
27
-
-
0034077901
-
A compound Poisson process for relaxing the molecular clock
-
Huelsenbeck J.P., Larget B., Swofford D.L. 2000. A compound Poisson process for relaxing the molecular clock. Genetics. 154:1879-1892.
-
(2000)
Genetics.
, vol.154
, pp. 1879-1892
-
-
Huelsenbeck, J.P.1
Larget, B.2
Swofford, D.L.3
-
28
-
-
39549117235
-
A nonparametric method for accommodating and testing across-site rate variation
-
Huelsenbeck J.P., Suchard M. 2007. A nonparametric method for accommodating and testing across-site rate variation. Syst. Biol. 56:975-987.
-
(2007)
Syst. Biol.
, vol.56
, pp. 975-987
-
-
Huelsenbeck, J.P.1
Suchard, M.2
-
29
-
-
34547762740
-
The impact of fossils and taxon sampling on ancient molecular dating analyses
-
Hug L.A., Roger A.J. 2007. The impact of fossils and taxon sampling on ancient molecular dating analyses. Mol. Biol. Evol. 24:1889-1897.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1889-1897
-
-
Hug, L.A.1
Roger, A.J.2
-
30
-
-
34547465760
-
Calibration choice, rate smoothing, and the pattern of tetrapod diversifcation according to the long nuclear gene RAG-1
-
Hugall A.F., Foster R., Lee M.S.Y. 2007. Calibration choice, rate smoothing, and the pattern of tetrapod diversifcation according to the long nuclear gene RAG-1. Syst. Biol. 56:543-563.
-
(2007)
Syst. Biol.
, vol.56
, pp. 543-563
-
-
Hugall, A.F.1
Foster, R.2
Lee, M.S.Y.3
-
31
-
-
0002024701
-
On the generalized "birth-and-death" process
-
Kendall D.G. 1948. On the generalized "birth-and-death" process. Ann. Math. Stat. 19:1-15.
-
(1948)
Ann. Math. Stat.
, vol.19
, pp. 1-15
-
-
Kendall, D.G.1
-
32
-
-
0025307631
-
Converting distance to time: Application to human evolution
-
Kishino H., Hasegawa M. 1990. Converting distance to time: application to human evolution. Methods Enzymol. 183:550-570.
-
(1990)
Methods Enzymol
, vol.183
, pp. 550-570
-
-
Kishino, H.1
Hasegawa, M.2
-
33
-
-
0035103260
-
Performance of a divergence time estimation method under a probabilistic model of rate evolution
-
Kishino H., Thorne J.L., Bruno W. 2001. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Mol. Biol. Evol. 18:352-361.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 352-361
-
-
Kishino, H.1
Thorne, J.L.2
Bruno, W.3
-
34
-
-
78651433454
-
Tectonic calibrations in molecular dating
-
Kodandaramaiah U. 2010. Tectonic calibrations in molecular dating. Curr. Zool. 57:116-124.
-
(2010)
Curr. Zool.
, vol.57
, pp. 116-124
-
-
Kodandaramaiah, U.1
-
35
-
-
2442691520
-
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
-
Lartillot N., Philippe H. 2004. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol. Biol. Evol. 21:1095-1109.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1095-1109
-
-
Lartillot, N.1
Philippe, H.2
-
36
-
-
60349127526
-
Phylogenetic uncertainty and molecular clock calibrations: A case study of legless lizards (Pygopodidae, Gekkota)
-
Lee M.S.Y., Oliver P.M., Hutchinson M.N. 2009. Phylogenetic uncertainty and molecular clock calibrations: a case study of legless lizards (Pygopodidae, Gekkota). Mol. Phylogenet. Evol. 50: 661-666.
-
(2009)
Mol. Phylogenet. Evol.
, vol.50
, pp. 661-666
-
-
Lee, M.S.Y.1
Oliver, P.M.2
Hutchinson, M.N.3
-
38
-
-
32044457409
-
Continuous and tractable models for the variation of evolutionary rates
-
Lepage T., Lawi S., Tupper P., Bryant D. 2006. Continuous and tractable models for the variation of evolutionary rates. Math. Biosci. 199:216-233.
-
(2006)
Math. Biosci.
, vol.199
, pp. 216-233
-
-
Lepage, T.1
Lawi, S.2
Tupper, P.3
Bryant, D.4
-
39
-
-
84555186862
-
Taxonomic structure of the fossil record is shaped by sampling bias
-
Lloyd G.T., Young J.R., Smith A.B. 2012. Taxonomic structure of the fossil record is shaped by sampling bias. Syst. Biol. 61:80-89.
-
(2012)
Syst. Biol.
, vol.61
, pp. 80-89
-
-
Lloyd, G.T.1
Young, J.R.2
Smith, A.B.3
-
40
-
-
84555194967
-
Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: A comparison of three approaches
-
Lukoschek V., Keogh J.S., Avise J.C. 2012. Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. Syst. Biol. 61:22-43.
-
(2012)
Syst. Biol.
, vol.61
, pp. 22-43
-
-
Lukoschek, V.1
Keogh, J.S.2
Avise, J.C.3
-
41
-
-
77953773178
-
Using fossils to break long branches in molecular dating: A comparison of relaxed clocks applied to the origin of angiosperms
-
Magallón S. 2009. Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms. Syst. Biol. 59:384-399.
-
(2009)
Syst. Biol.
, vol.59
, pp. 384-399
-
-
Magallón, S.1
-
42
-
-
0025243087
-
Confdence intervals on stratigraphic ranges
-
Marshall C.R. 1990. Confdence intervals on stratigraphic ranges. Paleobiology. 16:1-10.
-
(1990)
Paleobiology
, vol.16
, pp. 1-10
-
-
Marshall, C.R.1
-
43
-
-
43949092742
-
A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points
-
Marshall C.R. 2008. A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points. Am. Nat. 171:726-742.
-
(2008)
Am. Nat.
, vol.171
, pp. 726-742
-
-
Marshall, C.R.1
-
44
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis N., Rosenbluth A.W., Rosenbluth M.N., Teller A.H., Teller E. 1953. Equation of state calculations by fast computing machines. J. Chem. Phys. 21:1087-1092.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
45
-
-
81555219657
-
Fossil cross-validation of the dated ant phylogeny (Hymenoptera: Formicidae)
-
Moreau C.S., Bell C.D. 2011. Fossil cross-validation of the dated ant phylogeny (Hymenoptera: Formicidae). Entomol. Am. 117:22-27.
-
(2011)
Entomol. Am.
, vol.117
, pp. 22-27
-
-
Moreau, C.S.1
Bell, C.D.2
-
46
-
-
77950032550
-
Markov chain sampling methods for Dirichlet process mixture models
-
Neal R.M. 2000. Markov chain sampling methods for Dirichlet process mixture models. J. Comput. Graph. Stat. 9:249-265.
-
(2000)
J. Comput. Graph. Stat.
, vol.9
, pp. 249-265
-
-
Neal, R.M.1
-
47
-
-
13944259078
-
Assessing concordance of fossil calibration points in molecular clock studies: An example using turtles
-
Near T.J., Meylan P.A., Shaffer H.B. 2005. Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles. Am. Nat. 165:137-146.
-
(2005)
Am. Nat.
, vol.165
, pp. 137-146
-
-
Near, T.J.1
Meylan, P.A.2
Shaffer, H.B.3
-
49
-
-
79959381301
-
Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia
-
Pyron R.A. 2011. Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia. Syst. Biol. 60:466-481.
-
(2011)
Syst. Biol.
, vol.60
, pp. 466-481
-
-
Pyron, R.A.1
-
50
-
-
77955300661
-
-
Edinburgh (UK): Institute of Evolutionary Biology, University of Edinburgh
-
Rambaut A., Drummond A.J. 2009. Tracer v1.5. Edinburgh (UK): Institute of Evolutionary Biology, University of Edinburgh. Available from: http://beast.bio.ed.ac.uk/Tracer.
-
(2009)
Tracer v1.5
-
-
Rambaut, A.1
Drummond, A.J.2
-
51
-
-
0030928378
-
Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
Rambaut A., Grassly N.C. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
52
-
-
0029818407
-
Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
-
Rannala B., Yang Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43:304-311.
-
(1996)
J. Mol. Evol.
, vol.43
, pp. 304-311
-
-
Rannala, B.1
Yang, Z.2
-
53
-
-
34548556039
-
Inferring speciation times under an episodic molecular clock
-
Rannala B., Yang Z. 2007. Inferring speciation times under an episodic molecular clock. Syst. Biol. 56:453-466.
-
(2007)
Syst. Biol.
, vol.56
, pp. 453-466
-
-
Rannala, B.1
Yang, Z.2
-
54
-
-
84860159826
-
A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera
-
(in press) doi: 10.1093/sysbio/sys058
-
Ronquist F., Klopfstein S., Vilhelmsen L., Schulmeister S., Murray DL., Rasnitsyn AP. 2012. A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera. Syst. Biol. (in press) doi: 10.1093/sysbio/sys058.
-
(2012)
Syst. Biol.
-
-
Ronquist, F.1
Klopfstein, S.2
Vilhelmsen, L.3
Schulmeister, S.4
Murray, D.L.5
Rasnitsyn, A.P.6
-
55
-
-
78651466770
-
Phylogenetic relationships of the Cretaceous frog Beelzebufo from Madagascar and the placement of fossil constraints based on temporal and phylogenetic evidence
-
Ruane S., Pyron R.A., Burbrink F.T. 2010. Phylogenetic relationships of the Cretaceous frog Beelzebufo from Madagascar and the placement of fossil constraints based on temporal and phylogenetic evidence. J. Evol. Biol. 24:274-285.
-
(2010)
J. Evol. Biol.
, vol.24
, pp. 274-285
-
-
Ruane, S.1
Pyron, R.A.2
Burbrink, F.T.3
-
56
-
-
34547468349
-
Assessing calibration uncertainty in molecular dating: The assignment of fossils to alternative calibration points
-
Rutschmann F., Eriksson T., Salim K.A., Conti E. 2007. Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points. Syst. Biol. 56:591-608.
-
(2007)
Syst. Biol.
, vol.56
, pp. 591-608
-
-
Rutschmann, F.1
Eriksson, T.2
Salim, K.A.3
Conti, E.4
-
57
-
-
0030773749
-
A nonparametric approach to estimating divergence times in the absence of rate constancy
-
Sanderson M.J. 1997. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14:1218-1231.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1218-1231
-
-
Sanderson, M.J.1
-
58
-
-
0036135468
-
Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
-
Sanderson M.J. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19:101-109.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 101-109
-
-
Sanderson, M.J.1
-
59
-
-
78751478795
-
A Bayesian phylogenetic method to estimate unknown sequence ages
-
Shapiro B., Ho S.Y.W., Drummond A.J., Suchard M.A., Pybus O.G., Rambaut A. 2011. A Bayesian phylogenetic method to estimate unknown sequence ages. Mol. Biol. Evol. 28:879-887.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 879-887
-
-
Shapiro, B.1
Ho, S.Y.W.2
Drummond, A.J.3
Suchard, M.A.4
Pybus, O.G.5
Rambaut, A.6
-
60
-
-
70349478622
-
On incomplete sampling under birth-death models and connections to the sampling-based coalescent
-
Stadler T. 2009. On incomplete sampling under birth-death models and connections to the sampling-based coalescent. J. Theor. Biol. 261:58-66.
-
(2009)
J. Theor. Biol.
, vol.261
, pp. 58-66
-
-
Stadler, T.1
-
61
-
-
77958152206
-
Sampling-through-time in birth-death trees
-
Stadler T. 2010. Sampling-through-time in birth-death trees. J. Theor. Biol. 267:396-404.
-
(2010)
J. Theor. Biol.
, vol.267
, pp. 396-404
-
-
Stadler, T.1
-
62
-
-
80051988868
-
Simulating trees on a fxed number of extant species
-
Stadler T. 2011. Simulating trees on a fxed number of extant species. Syst. Biol. 60:668-675.
-
(2011)
Syst. Biol.
, vol.60
, pp. 668-675
-
-
Stadler, T.1
-
63
-
-
77954202497
-
DendroPy: A Python library for phy-logenetic computing
-
Sukumaran J., Holder M.T. 2010. DendroPy: a Python library for phy-logenetic computing. Bioinformatics. 26:1569-1571.
-
(2010)
Bioinformatics
, vol.26
, pp. 1569-1571
-
-
Sukumaran, J.1
Holder, M.T.2
-
64
-
-
0002671410
-
Some probabilistic and statistical problems on the analysis of DNA sequences
-
Tavaré S. 1986. Some probabilistic and statistical problems on the analysis of DNA sequences. Lectures in Mathematics in the Life Sciences 17:57-86.
-
(1986)
Lectures in Mathematics in the Life Sciences
, vol.17
, pp. 57-86
-
-
Tavaré, S.1
-
65
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne J., Kishino H., Painter I.S. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15:1647-1657.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1647-1657
-
-
Thorne, J.1
Kishino, H.2
Painter, I.S.3
-
66
-
-
30144435978
-
Estimation of divergence times from molecular sequence data
-
Nielsen R., editor New York: Springer
-
Thorne J.L., Kishino H. 2005. Estimation of divergence times from molecular sequence data. In: Nielsen R., editor. Statistical methods in molecular evolution. New York: Springer. p. 235-256.
-
(2005)
Statistical Methods in Molecular Evolution
, pp. 235-256
-
-
Thorne, J.L.1
Kishino, H.2
-
67
-
-
84863012163
-
Exploring the uncertainty in the calibration of the molecular clock
-
Warnock R.C.M., Yang Z., Donoghue P.C.J. 2012. Exploring the uncertainty in the calibration of the molecular clock. Biol. Lett. 8:156-159.
-
(2012)
Biol. Lett.
, vol.8
, pp. 156-159
-
-
Warnock, R.C.M.1
Yang, Z.2
Donoghue, P.C.J.3
-
68
-
-
78651454774
-
Combining phylogenomics and fossils in higherlevel squamate reptile phylogeny: Molecular data change the placement of fossil taxa
-
Wiens J.J., Kuczynski C.A., Townsend T., Reeder T.W., Mulcahy D.G., Sites J.W. 2010. Combining phylogenomics and fossils in higherlevel squamate reptile phylogeny: molecular data change the placement of fossil taxa. Syst. Biol. 59:674-688.
-
(2010)
Syst. Biol.
, vol.59
, pp. 674-688
-
-
Wiens, J.J.1
Kuczynski, C.A.2
Townsend, T.3
Reeder, T.W.4
Mulcahy, D.G.5
Sites, J.W.6
-
69
-
-
79952158855
-
Dating primate divergences through an integrated analysis of palaeontological and molecular data
-
Wilkinson R.D., Steiper M.E., Soligo C., Martin R.D., Yang Z., Tavaré S. 2011. Dating primate divergences through an integrated analysis of palaeontological and molecular data. Syst. Biol. 60:16-31.
-
(2011)
Syst. Biol.
, vol.60
, pp. 16-31
-
-
Wilkinson, R.D.1
Steiper, M.E.2
Soligo, C.3
Martin, R.D.4
Yang, Z.5
Tavaré, S.6
-
70
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
71
-
-
28944451210
-
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
-
Yang Z., Rannala B. 2006. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Mol. Biol. Evol. 23:212-226.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 212-226
-
-
Yang, Z.1
Rannala, B.2
-
72
-
-
0242571576
-
Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species
-
Yang Z., Yoder A.D. 2003. Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species. Syst. Biol. 52:705-716.
-
(2003)
Syst. Biol.
, vol.52
, pp. 705-716
-
-
Yang, Z.1
Yoder, A.D.2
-
73
-
-
0033933640
-
Estimation of primate speciation dates using local molecular clocks
-
Yoder A.D., Yang Z. 2000. Estimation of primate speciation dates using local molecular clocks. Mol. Biol. Evol. 17:1081-1090.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1081-1090
-
-
Yoder, A.D.1
Yang, Z.2
-
74
-
-
0001778604
-
A mathematical theory of evolution, based on the conclusions of Dr. J. C. Wills, F. R. S. Philos
-
Yule G.U. 1924. A mathematical theory of evolution, based on the conclusions of Dr. J. C. Wills, F. R. S. Philos. Trans. R. Soc. Lond. B Biol. Sci. 213:21-87.
-
(1924)
Trans. R. Soc. Lond. B Biol. Sci.
, vol.213
, pp. 21-87
-
-
Yule, G.U.1
-
75
-
-
0002331493
-
Molecular disease, evolution, and genetic heterogeneity
-
Kasha M., Pullman B., editors New York: Academic Press
-
Zuckerkandl E., Pauling L. 1962. Molecular disease, evolution, and genetic heterogeneity. In: Kasha M., Pullman B., editors. Horizons in biochemistry. New York: Academic Press. p. 189-225.
-
(1962)
Horizons in Biochemistry
, pp. 189-225
-
-
Zuckerkandl, E.1
Pauling, L.2
|