Hypothesis testing in biogeography

Trends in Ecology and Evolution

Volumn 26, Issue 2, 2011, Pages 66-72

  Crisp, Michael D ^a   Trewick, Steven A ^b   Cook, Lyn G ^c  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b MASSEY UNIVERSITY   (New Zealand)

^c UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CONTINENTAL DRIFT; GONDWANA; HYPOTHESIS TESTING; PALEOBIOGEOGRAPHY; PALEONTOLOGY; PHYLOGENETICS; SOUTHERN HEMISPHERE; SYNERGISM;

DEMOGRAPHY; ECOSYSTEM; FOSSIL; METHODOLOGY; PHYLOGENY; PHYLOGEOGRAPHY; SHORT SURVEY;

DEMOGRAPHY; ECOSYSTEM; FOSSILS; PHYLOGENY; PHYLOGEOGRAPHY;

EID: 78651518936     PISSN: 01695347     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tree.2010.11.005     Document Type: Short Survey

References (67)

1. Ball I.R. Nature and formulation of biogeographical hypotheses. Syst. Zool. 1976, 24:407-430.
2. Rosauer D., et al. Phylogenetic endemism: a new approach for identifying geographical concentrations of evolutionary history. Mol. Ecol. 2009, 18:4061-4072.
3. Drummond A.J., et al. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006, 4:e88.
4. Ree R.H., Smith S.A. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 2008, 57:4-14.
5. Lemey P., et al. Bayesian phylogeography finds its roots. PLoS Comput. Biol. 2009, 5:16.
6. Wiens J.J., Donoghue M.J. Historical biogeography, ecology and species richness. Trends Ecol. Evol. 2004, 19:639-644.
7. Riddle B.R., et al. The role of molecular genetics in sculpting the future of integrative biogeography. Prog. Phys. Geogr. 2008, 32:173-202.
8. Crisp M.D., et al. Phylogenetic biome conservatism on a global scale. Nature 2009, 458:754-756.
9. Donoghue M.J. A phylogenetic perspective on the distribution of plant diversity. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:11549-11555.
10. Wiens J.J., et al. Niche conservatism as an emerging principle in ecology and conservation biology. Ecol. Lett. 2010, 13:1310-1324.
11. Pigot A.L., et al. The shape and temporal dynamics of phylogenetic trees arising from geographic speciation. Syst. Biol. 2010, 59:660-673.
12. Andersson L. An ontological dilemma: epistemology and methodology of historical biogeography. J. Biogeogr. 1996, 23:269-277.
13. Humphries C.J. From dispersal to geographic congruence: comments on cladistic biogeography in the twentieth century. Milestones in Systematics 2004, 225-260. CRC Press. D.M. Williams, P.L. Forey (Eds.).
14. Lamm K.S., Redelings B.D. Reconstructing ancestral ranges in historical biogeography: properties and prospects. J. Syst. Evol. 2009, 47:369-382.
15. Kodandaramaiah U. Use of dispersal-vicariance analysis in biogeography; a critique. J. Biogeogr. 2010, 37:3-11.
16. Lewis P.O. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 2001, 50:913-925.
17. Sanmartín I., et al. Inferring dispersal: a Bayesian approach to phylogeny-based island biogeography, with special reference to the Canary Islands. J. Biogeogr. 2008, 35:428-449.
18. Webb, C.O. and Ree, R.H. Historical biogeography inference in Malesia. In Biotic evolution and environmental change in Southeast Asia (Gower, D. and Ruber, L., eds.), Cambridge University Press (in press).
19. Cook L.G., Crisp M.D. Directional asymmetry of long-distance dispersal and colonisation could mislead reconstructions of biogeography. J. Biogeogr. 2005, 32:741-754.
20. Sanmartín I., et al. West Wind Drift revisited: testing for directional dispersal in the Southern Hemisphere using event-based tree fitting. J. Biogeogr. 2007, 34:398-416.
21. Popper K.R. The Logic of Scientific Discovery 1959, Hutchinson.
22. McDowall R.M. What biogeography is: a place for process. J. Biogeogr. 2004, 31:345-351.
23. Waters J.M., Craw D. Goodbye Gondwana? New Zealand biogeography, geology, and the problem of circularity. Syst. Biol. 2006, 55:351-356.
24. Penny D., Phillips M.J. The rise of birds and mammals: are microevolutionary processes sufficient for macroevolution?. Trends Ecol. Evol. 2004, 19:516-522.
25. Landis C.A., et al. The Waipounamu Erosion Surface: questioning the antiquity of the New Zealand land surface and terrestrial fauna and flora. Geol. Mag. 2008, 145:173-197.
26. Goldberg J., et al. Evolution of New Zealand's terrestrial fauna: a review of molecular evidence. Philos. Trans. R. Soc. B, Biol. Sci. 2008, 363:3319-3334.
27. Donoghue M.J., Moore B.R. Toward an integrative historical biogeography. Integr. Comp. Biol. 2003, 43:261-270.
28. Hammond A.L. Plate tectonics: the geophysics of the Earth's surface. Science 1971, 173:40-41.
29. Rosen D.E. Vicariant patterns and historical explanation in biogeography. Syst. Zool. 1978, 27:159-188.
30. Simberloff D. The role of propagule pressure in biological invasions. Annu. Rev. Ecol. Evol. Syst. 2009, 40:81-102.
31. Trewick S.A., Gibb G.C. Vicars, tramps and assembly of the New Zealand avifauna: a review of molecular phylogenetic evidence. Ibis 2010, 152:226-253.
32. Poux C., et al. Asynchronous colonization of Madagascar by the four endemic clades of primates, tenrecs, carnivores, and rodents as inferred from nuclear genes. Syst. Biol. 2005, 54:719-730.
33. Wallis G.P., Trewick S.A. New Zealand phylogeography: evolution on a small continent. Mol. Ecol. 2009, 18:3548-3580.
34. Cook L.G., Crisp M.D. Not so ancient: the extant crown group of Nothofagus represents a post-Gondwanan radiation. Proc. R. Soc. B, Biol. Sci. 2005, 272:2535-2544.
35. Biffin E., et al. Did kauri (Agathis: Araucariaceae) really survive the Oligocene drowning of New Zealand?. Syst. Biol. 2010, 59:594-610.
36. Phillips M.J., et al. Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites. Syst. Biol. 2010, 59:90-107.
37. Poux C., et al. Arrival and diversification of caviomorph rodents and platyrrhine primates in South America. Syst. Biol. 2006, 55:228-244.
38. Lindell J., et al. Deep genealogies and the mid-peninsular seaway of Baja California. J. Biogeogr. 2006, 33:1327-1331.
39. Crisp M.D., Cook L.G. A congruent molecular signature of vicariance across multiple plant lineages. Mol. Phylogenet. Evol. 2007, 43:1106-1117.
40. Riddle B.R., Hafner D.J. A step-wise approach to integrating phylogeographic and phylogenetic biogeographic perspectives on the history of a core North American warm deserts biota. J. Arid Envir. 2006, 66:435-461.
41. Waters J.M., Roy M.S. Out of Africa: the slow train to Australasia. Syst. Biol. 2004, 53:18-24.
42. Muñoz J., et al. Wind as a long-distance dispersal vehicle in the Southern Hemisphere. Science 2004, 304:1144-1147.
43. Ladiges P.Y., Cantrill D. New Caledonia-Australian connections: biogeographic patterns and geology. Aust. Syst. Bot. 2007, 20:383-389.
44. Heads M. Panbiogeography of New Caledonia, south-west Pacific: basal angiosperms on basement terranes, ultramafic endemics inherited from volcanic island arcs and old taxa endemic to young islands. J. Biogeogr. 2008, 35:2153-2175.
45. Nathan R. Long-distance dispersal of plants. Science 2006, 313:786-788.
46. Hardy O.J. How fat is the tail?. Heredity 2009, 103:437-438.
47. Rosen B.R. Biogeographic patterns: a perceptual overview. Analytical Biogeography 1988, 23-55. Chapman and Hall. A.A. Myers, P.S. Giller (Eds.).
48. Brown G.K., et al. Historical biogeography of Rhododendron section Vireya and the Malesian Archipelago. J. Biogeogr. 2006, 33:1929-1944.
49. Whitmore T.C. Wallace's Line: a result of plate tectonics. Ann. Mo. Bot. Gard. 1982, 69:668-675.
50. McArthur R.H., Wilson E.O. The Theory of Island Biogeography 1967, Princeton University Press.
51. Quental T.B., Marshall C.R. Diversity dynamics: molecular phylogenies need the fossil record. Trends Ecol. Evol. 2010, 25:434-441.
52. Pole M.S. Can long-distance dispersal be inferred from the New Zealand plant fossil record?. Aust. J. Bot. 2001, 49:357-366.
53. Jordan G.J., et al. Fossil Ericaceae from New Zealand: deconstructing the use of fossil evidence in historical biogeography. Am. J. Bot. 2010, 97:59-70.
54. Vullo R., et al. The oldest modern therian mammal from Europe and its bearing on stem marsupial paleobiogeography. Proc. Natl Acad. Sci. U. S. A. 2009, 106:19910-19915.
55. Jones M.E., et al. A sphenodontine (Rhynchocephalia) from the Miocene of New Zealand and palaeobiogeography of the tuatara (Sphenodon). Proc. R. Soc. B. Biol. Sci. 2009, 276:1385-1390.
56. Hill R.S., Brodribb T.J. Southern conifers in time and space. Aust. J. Bot. 1999, 47:639-696.
57. Wilf P., et al. Papuacedrus (Cupressaceae) in Eocene Patagonia: a new fossil link to Australasian rainforests. Am. J. Bot. 2009, 96:2031-2047.
58. Paull R., Hill R.S. Early Oligocene Callitris and Fitzroya (Cupressaceae) from Tasmania. Am. J. Bot. 2010, 97:809-820.
59. Trewick S.A., et al. Hello New Zealand. J. Biogeogr. 2007, 34:1-6.
60. Grandcolas P., et al. New Caledonia: a very old Darwinian island?. Philos. Trans. R. Soc. B, Biol. Sci. 2008, 363:3309-3317.
61. Nathan R., et al. Mechanisms of long-distance seed dispersal. Trends Ecol. Evol. 2008, 23:638-647.
62. Ho S.Y.W., Phillips M.J. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Syst. Biol. 2009, 58:367-380.
63. Sauquet H., et al. Contrasted patterns of hyperdiversification in Mediterranean hotspots. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:221-225.
64. Hill R.S. Origins of the southeastern Australian vegetation. Philos. Trans. R. Soc. B, Biol. Sci. 2004, 359:1537-1549.
65. Nilsson M.A., et al. Tracking marsupial evolution using archaic genomic retroposon insertions. PLoS Biol. 2010, 8:e1000436.
66. Gadek P.A., et al. Relationships within Cupressaceae sensu lato: a combined morphological and molecular approach. Am. J. Bot. 2000, 87:1044-1057.
67. Oakley T.H., Cunningham C.W. Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution 2000, 54:397-405.