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Volumn 14, Issue 1, 2013, Pages

Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species

Author keywords

Catfish; Comparative mapping; Conserved synteny; Genome; Linkage mapping

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CHANNEL CATFISH; CHROMOSOME ANALYSIS; CHROMOSOME REARRANGEMENT; COMPARATIVE GENE MAPPING; GASTEROSTEUS ACULEATUS; GENE LOCATION; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC LINKAGE; GENETIC MODEL; GENOME ANALYSIS; NONHUMAN; ORYZIAS; SPECIES COMPARISON; SPECIES DIFFERENTIATION; SYNTENY; TETRAODON NIGROVIRIDIS; TETRAODONTIFORMES; ZEBRA FISH;

EID: 84887335833     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-780     Document Type: Article
Times cited : (19)

References (73)
  • 7
    • 42149158792 scopus 로고    scopus 로고
    • Linking the genomes of nonmodel teleosts through comparative genomics
    • 10.1007/s10126-007-9066-5, 18297360
    • Sarropoulou E, Nousdili D, Magoulas A, Kotoulas G. Linking the genomes of nonmodel teleosts through comparative genomics. Mar Biotechnol (NY) 2008, 10(3):227-233. 10.1007/s10126-007-9066-5, 18297360.
    • (2008) Mar Biotechnol (NY) , vol.10 , Issue.3 , pp. 227-233
    • Sarropoulou, E.1    Nousdili, D.2    Magoulas, A.3    Kotoulas, G.4
  • 8
    • 83655197149 scopus 로고    scopus 로고
    • A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns
    • 10.1186/1471-2164-12-615, 3261913, 22182215
    • Lien S, Gidskehaug L, Moen T, Hayes BJ, Berg PR, Davidson WS, Omholt SW, Kent MP. A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics 2011, 12:615. 10.1186/1471-2164-12-615, 3261913, 22182215.
    • (2011) BMC Genomics , vol.12 , pp. 615
    • Lien, S.1    Gidskehaug, L.2    Moen, T.3    Hayes, B.J.4    Berg, P.R.5    Davidson, W.S.6    Omholt, S.W.7    Kent, M.P.8
  • 11
    • 12144288565 scopus 로고    scopus 로고
    • Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics
    • 10.1101/gr.1687304, 353236, 14962987
    • Rise ML, von Schalburg KR, Brown GD, Mawer MA, Devlin RH, Kuipers N, Busby M, Beetz-Sargent M, Alberto R, Gibbs AR, et al. Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Res 2004, 14(3):478-490. 10.1101/gr.1687304, 353236, 14962987.
    • (2004) Genome Res , vol.14 , Issue.3 , pp. 478-490
    • Rise, M.L.1    von Schalburg, K.R.2    Brown, G.D.3    Mawer, M.A.4    Devlin, R.H.5    Kuipers, N.6    Busby, M.7    Beetz-Sargent, M.8    Alberto, R.9    Gibbs, A.R.10
  • 13
    • 55949121630 scopus 로고    scopus 로고
    • A combined AFLP and microsatellite linkage map and pilot comparative genomic analysis of European sea bass Dicentrarchus labrax L
    • 10.1111/j.1365-2052.2008.01786.x, 18828863
    • Chistiakov DA, Tsigenopoulos CS, Lagnel J, Guo YM, Hellemans B, Haley CS, Volckaert FA, Kotoulas G. A combined AFLP and microsatellite linkage map and pilot comparative genomic analysis of European sea bass Dicentrarchus labrax L. Anim Genet 2008, 39(6):623-634. 10.1111/j.1365-2052.2008.01786.x, 18828863.
    • (2008) Anim Genet , vol.39 , Issue.6 , pp. 623-634
    • Chistiakov, D.A.1    Tsigenopoulos, C.S.2    Lagnel, J.3    Guo, Y.M.4    Hellemans, B.5    Haley, C.S.6    Volckaert, F.A.7    Kotoulas, G.8
  • 14
    • 77956877859 scopus 로고    scopus 로고
    • A radiation hybrid map of the European sea bass (Dicentrarchus labrax) based on 1581 markers: Synteny analysis with model fish genomes
    • 10.1016/j.ygeno.2010.07.007, 20659549
    • Guyon R, Senger F, Rakotomanga M, Sadequi N, Volckaert FA, Hitte C, Galibert F. A radiation hybrid map of the European sea bass (Dicentrarchus labrax) based on 1581 markers: Synteny analysis with model fish genomes. Genomics 2010, 96(4):228-238. 10.1016/j.ygeno.2010.07.007, 20659549.
    • (2010) Genomics , vol.96 , Issue.4 , pp. 228-238
    • Guyon, R.1    Senger, F.2    Rakotomanga, M.3    Sadequi, N.4    Volckaert, F.A.5    Hitte, C.6    Galibert, F.7
  • 15
    • 77649287723 scopus 로고    scopus 로고
    • The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing
    • 10.1186/1471-2164-11-68, 2837037, 20105308
    • Kuhl H, Beck A, Wozniak G, Canario AV, Volckaert FA, Reinhardt R. The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing. BMC Genomics 2010, 11:68. 10.1186/1471-2164-11-68, 2837037, 20105308.
    • (2010) BMC Genomics , vol.11 , pp. 68
    • Kuhl, H.1    Beck, A.2    Wozniak, G.3    Canario, A.V.4    Volckaert, F.A.5    Reinhardt, R.6
  • 16
    • 33748804417 scopus 로고    scopus 로고
    • Construction and characterization of a BAC library for the European sea bass Dicentrarchus labrax
    • 10.1111/j.1365-2052.2006.01514.x, 16978191
    • Whitaker HA, McAndrew BJ, Taggart JB. Construction and characterization of a BAC library for the European sea bass Dicentrarchus labrax. Anim Genet 2006, 37(5):526. 10.1111/j.1365-2052.2006.01514.x, 16978191.
    • (2006) Anim Genet , vol.37 , Issue.5 , pp. 526
    • Whitaker, H.A.1    McAndrew, B.J.2    Taggart, J.B.3
  • 19
    • 77951579860 scopus 로고    scopus 로고
    • An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags
    • 10.1186/1471-2164-11-278, 2874815, 20433739
    • Lee BY, Howe AE, Conte MA, D'Cotta H, Pepey E, Baroiller JF, di Palma F, Carleton KL, Kocher TD. An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags. BMC Genomics 2010, 11:278. 10.1186/1471-2164-11-278, 2874815, 20433739.
    • (2010) BMC Genomics , vol.11 , pp. 278
    • Lee, B.Y.1    Howe, A.E.2    Conte, M.A.3    D'Cotta, H.4    Pepey, E.5    Baroiller, J.F.6    di Palma, F.7    Carleton, K.L.8    Kocher, T.D.9
  • 22
    • 84865292948 scopus 로고    scopus 로고
    • SNP marker detection and genotyping in tilapia
    • 10.1111/j.1755-0998.2012.03144.x, 22524158
    • Van Bers NE, Crooijmans RP, Groenen MA, Dibbits BW, Komen J. SNP marker detection and genotyping in tilapia. Mol Ecol Resour 2012, 12(5):932-941. 10.1111/j.1755-0998.2012.03144.x, 22524158.
    • (2012) Mol Ecol Resour , vol.12 , Issue.5 , pp. 932-941
    • Van Bers, N.E.1    Crooijmans, R.P.2    Groenen, M.A.3    Dibbits, B.W.4    Komen, J.5
  • 23
    • 79959645692 scopus 로고    scopus 로고
    • Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes
    • 10.1186/1471-2164-12-314, 3125269, 21672188
    • Genet C, Dehais P, Palti Y, Gao G, Gavory F, Wincker P, Quillet E, Boussaha M. Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes. BMC Genomics 2011, 12:314. 10.1186/1471-2164-12-314, 3125269, 21672188.
    • (2011) BMC Genomics , vol.12 , pp. 314
    • Genet, C.1    Dehais, P.2    Palti, Y.3    Gao, G.4    Gavory, F.5    Wincker, P.6    Quillet, E.7    Boussaha, M.8
  • 24
    • 33845710168 scopus 로고    scopus 로고
    • A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms
    • 10.1186/1471-2164-7-302, 1698487, 17137492
    • Guyomard R, Mauger S, Tabet-Canale K, Martineau S, Genet C, Krieg F, Quillet E. A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms. BMC Genomics 2006, 7:302. 10.1186/1471-2164-7-302, 1698487, 17137492.
    • (2006) BMC Genomics , vol.7 , pp. 302
    • Guyomard, R.1    Mauger, S.2    Tabet-Canale, K.3    Martineau, S.4    Genet, C.5    Krieg, F.6    Quillet, E.7
  • 25
    • 84859431356 scopus 로고    scopus 로고
    • A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes
    • 10.1007/s10126-011-9418-z, 22101344
    • Palti Y, Genet C, Gao G, Hu Y, You FM, Boussaha M, Rexroad CE, Luo MC. A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes. Mar Biotechnol (NY) 2012, 14(3):343-357. 10.1007/s10126-011-9418-z, 22101344.
    • (2012) Mar Biotechnol (NY) , vol.14 , Issue.3 , pp. 343-357
    • Palti, Y.1    Genet, C.2    Gao, G.3    Hu, Y.4    You, F.M.5    Boussaha, M.6    Rexroad, C.E.7    Luo, M.C.8
  • 28
    • 58049215494 scopus 로고    scopus 로고
    • A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
    • 2605456, 19019240
    • Rexroad CE, Palti Y, Gahr SA, Vallejo RL. A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BMC Genet 2008, 9:74. 2605456, 19019240.
    • (2008) BMC Genet , vol.9 , pp. 74
    • Rexroad, C.E.1    Palti, Y.2    Gahr, S.A.3    Vallejo, R.L.4
  • 30
    • 33646929458 scopus 로고    scopus 로고
    • The first radiation hybrid map of a perch-like fish: the gilthead sea bream (Sparus aurata L)
    • 10.1016/j.ygeno.2005.11.019, 16413167
    • Senger F, Priat C, Hitte C, Sarropoulou E, Franch R, Geisler R, Bargelloni L, Power D, Galibert F. The first radiation hybrid map of a perch-like fish: the gilthead sea bream (Sparus aurata L). Genomics 2006, 87(6):793-800. 10.1016/j.ygeno.2005.11.019, 16413167.
    • (2006) Genomics , vol.87 , Issue.6 , pp. 793-800
    • Senger, F.1    Priat, C.2    Hitte, C.3    Sarropoulou, E.4    Franch, R.5    Geisler, R.6    Bargelloni, L.7    Power, D.8    Galibert, F.9
  • 31
    • 79251646156 scopus 로고    scopus 로고
    • Development of genomic resources in support of sequencing, assembly, and annotation of the catfish genome
    • 10.1016/j.cbd.2010.03.001, 20430707
    • Liu Z. Development of genomic resources in support of sequencing, assembly, and annotation of the catfish genome. Comp Biochem Physiol Part D Genomics Proteomics 2011, 6(1):11-17. 10.1016/j.cbd.2010.03.001, 20430707.
    • (2011) Comp Biochem Physiol Part D Genomics Proteomics , vol.6 , Issue.1 , pp. 11-17
    • Liu, Z.1
  • 32
    • 0038297210 scopus 로고    scopus 로고
    • A review of catfish genomics: progress and perspectives
    • 10.1002/cfg.265, 2447413, 18629126
    • Liu Z. A review of catfish genomics: progress and perspectives. Comp Funct Genomics 2003, 4(2):259-265. 10.1002/cfg.265, 2447413, 18629126.
    • (2003) Comp Funct Genomics , vol.4 , Issue.2 , pp. 259-265
    • Liu, Z.1
  • 33
    • 0034526618 scopus 로고    scopus 로고
    • A Comparative Map of the Zebrafish Genome
    • 10.1101/gr.10.12.1903, 313070, 11116086
    • Woods IG, Kelly PD, Chu F, Ngo-Hazelett P, Yan Y-L, et al. A Comparative Map of the Zebrafish Genome. Genome Res 2000, 10:1903-1914. 10.1101/gr.10.12.1903, 313070, 11116086.
    • (2000) Genome Res , vol.10 , pp. 1903-1914
    • Woods, I.G.1    Kelly, P.D.2    Chu, F.3    Ngo-Hazelett, P.4    Yan, Y.-L.5
  • 34
    • 0035968908 scopus 로고    scopus 로고
    • Comparative genomics provides evidence for an ancient genome duplication event in fish
    • 10.1098/rstb.2001.0975, 10.1098/rstb.2001.0975, 1088543, 11604130
    • Taylor JS, Van De Peer Y, Braasch I, Meyer A. Comparative genomics provides evidence for an ancient genome duplication event in fish. Philos Trans R Soc Lond B Biol Sci 2001, 356:1661-1679. 10.1098/rstb.2001.0975, 10.1098/rstb.2001.0975, 1088543, 11604130.
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.356 , pp. 1661-1679
    • Taylor, J.S.1    Van De Peer, Y.2    Braasch, I.3    Meyer, A.4
  • 35
    • 84858196323 scopus 로고    scopus 로고
    • A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts
    • 3368724, 22424132
    • Guyomard R, Boussaha M, Krieg F, Hervet C, Quillet E. A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts. BMC Genet 2012, 13:15. 3368724, 22424132.
    • (2012) BMC Genet , vol.13 , pp. 15
    • Guyomard, R.1    Boussaha, M.2    Krieg, F.3    Hervet, C.4    Quillet, E.5
  • 36
    • 84874059458 scopus 로고    scopus 로고
    • Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers
    • 10.1186/1471-2164-14-122, 10.1186/1471-2164-14-122, 3599049, 23432897
    • Parveen N, Masood A, Iftikhar N, Minhas BF, Minhas R, et al. Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers. BMC Genomics 2013, 14:122. 10.1186/1471-2164-14-122, 10.1186/1471-2164-14-122, 3599049, 23432897.
    • (2013) BMC Genomics , vol.14 , pp. 122
    • Parveen, N.1    Masood, A.2    Iftikhar, N.3    Minhas, B.F.4    Minhas, R.5
  • 37
    • 80255129407 scopus 로고    scopus 로고
    • A genetic linkage map and comparative genome analysis of common carp (Cyprinus carpio L.) using microsatellites and SNPs
    • doi:10.1007/s00438-011-0644-x, 10.1007/s00438-011-0644-x, 21870156
    • Zheng X, Kuang Y, Zhang X, Lu C, Cao D, et al. A genetic linkage map and comparative genome analysis of common carp (Cyprinus carpio L.) using microsatellites and SNPs. Mol Genet Genomics 2011, 286:261-277. doi:10.1007/s00438-011-0644-x, 10.1007/s00438-011-0644-x, 21870156.
    • (2011) Mol Genet Genomics , vol.286 , pp. 261-277
    • Zheng, X.1    Kuang, Y.2    Zhang, X.3    Lu, C.4    Cao, D.5
  • 38
    • 70449707623 scopus 로고    scopus 로고
    • Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes
    • 10.1186/1471-2164-10-489, 2770083, 19849829
    • Garrett M, Fullaondo A, Troxler L, Micklem G, Gubb D. Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes. BMC Genomics 2009, 10:489. 10.1186/1471-2164-10-489, 2770083, 19849829.
    • (2009) BMC Genomics , vol.10 , pp. 489
    • Garrett, M.1    Fullaondo, A.2    Troxler, L.3    Micklem, G.4    Gubb, D.5
  • 39
    • 84877795532 scopus 로고    scopus 로고
    • Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes
    • 10.1371/journal.pone.0063895, 3655950, 23696857
    • Liu S, Li Q, Liu Z. Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes. PLoS ONE 2013, 8(5):e63895. 10.1371/journal.pone.0063895, 3655950, 23696857.
    • (2013) PLoS ONE , vol.8 , Issue.5
    • Liu, S.1    Li, Q.2    Liu, Z.3
  • 42
    • 20444423961 scopus 로고    scopus 로고
    • Piggy-BACing the human genome II. A high-resolution, physically anchored, comparative map of the porcine autosomes
    • 10.1016/j.ygeno.2005.04.010, 16246521
    • Meyers SN, Rogatcheva MB, Larkin DM, Yerle M, Milan D, Hawken RJ, Schook LB, Beever JE. Piggy-BACing the human genome II. A high-resolution, physically anchored, comparative map of the porcine autosomes. Genomics 2005, 86(6):739-752. 10.1016/j.ygeno.2005.04.010, 16246521.
    • (2005) Genomics , vol.86 , Issue.6 , pp. 739-752
    • Meyers, S.N.1    Rogatcheva, M.B.2    Larkin, D.M.3    Yerle, M.4    Milan, D.5    Hawken, R.J.6    Schook, L.B.7    Beever, J.E.8
  • 45
  • 46
    • 67650318160 scopus 로고    scopus 로고
    • Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers
    • 10.1534/genetics.108.098855, 2666527, 19171943
    • Kucuktas H, Wang S, Li P, He C, Xu P, Sha Z, Liu H, Jiang Y, Baoprasertkul P, Somridhivej B, et al. Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers. Genetics 2009, 181(4):1649-1660. 10.1534/genetics.108.098855, 2666527, 19171943.
    • (2009) Genetics , vol.181 , Issue.4 , pp. 1649-1660
    • Kucuktas, H.1    Wang, S.2    Li, P.3    He, C.4    Xu, P.5    Sha, Z.6    Liu, H.7    Jiang, Y.8    Baoprasertkul, P.9    Somridhivej, B.10
  • 47
    • 0038260755 scopus 로고    scopus 로고
    • An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family
    • 1462775, 14573480
    • Liu Z, Karsi A, Li P, Cao D, Dunham R. An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics 2003, 165(2):687-694. 1462775, 14573480.
    • (2003) Genetics , vol.165 , Issue.2 , pp. 687-694
    • Liu, Z.1    Karsi, A.2    Li, P.3    Cao, D.4    Dunham, R.5
  • 48
  • 49
    • 0034977074 scopus 로고    scopus 로고
    • A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus
    • 1461682, 11404336
    • Waldbieser GC, Bosworth BG, Nonneman DJ, Wolters WR. A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus. Genetics 2001, 158(2):727-734. 1461682, 11404336.
    • (2001) Genetics , vol.158 , Issue.2 , pp. 727-734
    • Waldbieser, G.C.1    Bosworth, B.G.2    Nonneman, D.J.3    Wolters, W.R.4
  • 50
    • 0037585294 scopus 로고    scopus 로고
    • Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus
    • 10.1186/1297-9686-35-7-673, 2698005, 14604514
    • Quiniou SM, Katagiri T, Miller NW, Wilson M, Wolters WR, Waldbieser GC. Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus. Genet Sel Evol 2003, 35(6):673-683. 10.1186/1297-9686-35-7-673, 2698005, 14604514.
    • (2003) Genet Sel Evol , vol.35 , Issue.6 , pp. 673-683
    • Quiniou, S.M.1    Katagiri, T.2    Miller, N.W.3    Wilson, M.4    Wolters, W.R.5    Waldbieser, G.C.6
  • 51
    • 34447292058 scopus 로고    scopus 로고
    • Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes
    • 10.1007/s10126-007-9021-5, 17671813
    • Wang S, Xu P, Thorsen J, Zhu B, de Jong PJ, Waldbieser G, Kucuktas H, Liu Z. Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes. Mar Biotechnol (NY) 2007, 9(6):701-711. 10.1007/s10126-007-9021-5, 17671813.
    • (2007) Mar Biotechnol (NY) , vol.9 , Issue.6 , pp. 701-711
    • Wang, S.1    Xu, P.2    Thorsen, J.3    Zhu, B.4    de Jong, P.J.5    Waldbieser, G.6    Kucuktas, H.7    Liu, Z.8
  • 52
    • 33847333157 scopus 로고    scopus 로고
    • A first generation BAC-based physical map of the channel catfish genome
    • 10.1186/1471-2164-8-40, 1800894, 17284319
    • Quiniou SM, Waldbieser GC, Duke MV. A first generation BAC-based physical map of the channel catfish genome. BMC Genomics 2007, 8:40. 10.1186/1471-2164-8-40, 1800894, 17284319.
    • (2007) BMC Genomics , vol.8 , pp. 40
    • Quiniou, S.M.1    Waldbieser, G.C.2    Duke, M.V.3
  • 53
    • 34447265677 scopus 로고    scopus 로고
    • A BAC-based physical map of the channel catfish genome
    • 10.1016/j.ygeno.2007.05.008, 17582737
    • Xu P, Wang S, Liu L, Thorsen J, Kucuktas H, Liu Z. A BAC-based physical map of the channel catfish genome. Genomics 2007, 90(3):380-388. 10.1016/j.ygeno.2007.05.008, 17582737.
    • (2007) Genomics , vol.90 , Issue.3 , pp. 380-388
    • Xu, P.1    Wang, S.2    Liu, L.3    Thorsen, J.4    Kucuktas, H.5    Liu, Z.6
  • 54
    • 33746217018 scopus 로고    scopus 로고
    • Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species
    • 10.1111/j.1365-2052.2006.01453.x, 16879340
    • Xu P, Wang S, Liu L, Peatman E, Somridhivej B, Thimmapuram J, Gong G, Liu Z. Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species. Anim Genet 2006, 37(4):321-326. 10.1111/j.1365-2052.2006.01453.x, 16879340.
    • (2006) Anim Genet , vol.37 , Issue.4 , pp. 321-326
    • Xu, P.1    Wang, S.2    Liu, L.3    Peatman, E.4    Somridhivej, B.5    Thimmapuram, J.6    Gong, G.7    Liu, Z.8
  • 55
    • 0034875203 scopus 로고    scopus 로고
    • Transcriptome of channel catfish (Ictalurus punctatus): initial analysis of genes and expression profiles of the head kidney
    • 10.1046/j.1365-2052.2001.00753.x, 11531695
    • Cao D, Kocabas A, Ju Z, Karsi A, Li P, Patterson A, Liu Z. Transcriptome of channel catfish (Ictalurus punctatus): initial analysis of genes and expression profiles of the head kidney. Anim Genet 2001, 32(4):169-188. 10.1046/j.1365-2052.2001.00753.x, 11531695.
    • (2001) Anim Genet , vol.32 , Issue.4 , pp. 169-188
    • Cao, D.1    Kocabas, A.2    Ju, Z.3    Karsi, A.4    Li, P.5    Patterson, A.6    Liu, Z.7
  • 56
    • 0034739793 scopus 로고    scopus 로고
    • Transcriptome analysis of channel catfish (Ictalurus punctatus): genes and expression profile from the brain
    • 10.1016/S0378-1119(00)00491-1, 11167026
    • Ju Z, Karsi A, Kocabas A, Patterson A, Li P, Cao D, Dunham R, Liu Z. Transcriptome analysis of channel catfish (Ictalurus punctatus): genes and expression profile from the brain. Gene 2000, 261(2):373-382. 10.1016/S0378-1119(00)00491-1, 11167026.
    • (2000) Gene , vol.261 , Issue.2 , pp. 373-382
    • Ju, Z.1    Karsi, A.2    Kocabas, A.3    Patterson, A.4    Li, P.5    Cao, D.6    Dunham, R.7    Liu, Z.8
  • 57
    • 0037138401 scopus 로고    scopus 로고
    • Transcriptome analysis of channel catfish (Ictalurus punctatus): initial analysis of gene expression and microsatellite-containing cDNAs in the skin
    • Karsi A, Cao D, Li P, Patterson A, Kocabas A, Feng J, Ju Z, Mickett KD, Liu Z. Transcriptome analysis of channel catfish (Ictalurus punctatus): initial analysis of gene expression and microsatellite-containing cDNAs in the skin. Gene 2002, 285(1-2):157-168.
    • (2002) Gene , vol.285 , Issue.1-2 , pp. 157-168
    • Karsi, A.1    Cao, D.2    Li, P.3    Patterson, A.4    Kocabas, A.5    Feng, J.6    Ju, Z.7    Mickett, K.D.8    Liu, Z.9
  • 58
    • 34447258186 scopus 로고    scopus 로고
    • Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs
    • 10.1186/1471-2164-8-177, 1906771, 17577415
    • Li P, Peatman E, Wang S, Feng J, He C, Baoprasertkul P, Xu P, Kucuktas H, Nandi S, Somridhivej B, et al. Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs. BMC Genomics 2007, 8:177. 10.1186/1471-2164-8-177, 1906771, 17577415.
    • (2007) BMC Genomics , vol.8 , pp. 177
    • Li, P.1    Peatman, E.2    Wang, S.3    Feng, J.4    He, C.5    Baoprasertkul, P.6    Xu, P.7    Kucuktas, H.8    Nandi, S.9    Somridhivej, B.10
  • 59
    • 77349083472 scopus 로고    scopus 로고
    • Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
    • 10.1186/gb-2010-11-1-r8, 2847720, 20096101
    • Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, et al. Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biol 2010, 11(1):R8. 10.1186/gb-2010-11-1-r8, 2847720, 20096101.
    • (2010) Genome Biol , vol.11 , Issue.1
    • Wang, S.1    Peatman, E.2    Abernathy, J.3    Waldbieser, G.4    Lindquist, E.5    Richardson, P.6    Lucas, S.7    Wang, M.8    Li, P.9    Thimmapuram, J.10
  • 60
    • 77955354748 scopus 로고    scopus 로고
    • Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)
    • 10.1371/journal.pone.0011546, 2902525, 20634964
    • Chen F, Lee Y, Jiang Y, Wang S, Peatman E, Abernathy J, Liu H, Liu S, Kucuktas H, Ke C, et al. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). PLoS One 2010, 5(7):e11546. 10.1371/journal.pone.0011546, 2902525, 20634964.
    • (2010) PLoS One , vol.5 , Issue.7
    • Chen, F.1    Lee, Y.2    Jiang, Y.3    Wang, S.4    Peatman, E.5    Abernathy, J.6    Liu, H.7    Liu, S.8    Kucuktas, H.9    Ke, C.10
  • 61
    • 84874199636 scopus 로고    scopus 로고
    • Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
    • 10.1186/1471-2164-13-595, 3582483, 23127152
    • Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, et al. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. BMC Genomics 2012, 13:595. 10.1186/1471-2164-13-595, 3582483, 23127152.
    • (2012) BMC Genomics , vol.13 , pp. 595
    • Liu, S.1    Zhang, Y.2    Zhou, Z.3    Waldbieser, G.4    Sun, F.5    Lu, J.6    Zhang, J.7    Jiang, Y.8    Zhang, H.9    Wang, X.10
  • 62
    • 78651551997 scopus 로고    scopus 로고
    • Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array
    • 10.1186/1471-2164-12-53, 3033819, 21255432
    • Liu S, Zhou Z, Lu J, Sun F, Wang S, Liu H, Jiang Y, Kucuktas H, Kaltenboeck L, Peatman E, et al. Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array. BMC Genomics 2011, 12:53. 10.1186/1471-2164-12-53, 3033819, 21255432.
    • (2011) BMC Genomics , vol.12 , pp. 53
    • Liu, S.1    Zhou, Z.2    Lu, J.3    Sun, F.4    Wang, S.5    Liu, H.6    Jiang, Y.7    Kucuktas, H.8    Kaltenboeck, L.9    Peatman, E.10
  • 63
    • 84055178415 scopus 로고    scopus 로고
    • A pilot study for channel catfish whole genome sequencing and de novo assembly
    • 10.1186/1471-2164-12-629, 3266365, 22192763
    • Jiang Y, Lu J, Peatman E, Kucuktas H, Liu S, Wang S, Sun F, Liu Z. A pilot study for channel catfish whole genome sequencing and de novo assembly. BMC Genomics 2011, 12:629. 10.1186/1471-2164-12-629, 3266365, 22192763.
    • (2011) BMC Genomics , vol.12 , pp. 629
    • Jiang, Y.1    Lu, J.2    Peatman, E.3    Kucuktas, H.4    Liu, S.5    Wang, S.6    Sun, F.7    Liu, Z.8
  • 64
    • 84878723433 scopus 로고    scopus 로고
    • Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish with extensive inter-chromosomal rearrangements
    • 10.1186/1471-2164-14-387, 3691659, 23758806
    • Zhang Y, Liu S, Lu J, Jiang Y, Gao X, Ninwichina P, Li C, Waldbieser G, Liu Z. Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish with extensive inter-chromosomal rearrangements. BMC Genomics 2013, 14:387. 10.1186/1471-2164-14-387, 3691659, 23758806.
    • (2013) BMC Genomics , vol.14 , pp. 387
    • Zhang, Y.1    Liu, S.2    Lu, J.3    Jiang, Y.4    Gao, X.5    Ninwichina, P.6    Li, C.7    Waldbieser, G.8    Liu, Z.9
  • 65
    • 84886257653 scopus 로고    scopus 로고
    • Generation of physical map contig-specific sequences useful for whole genome sequence assembly and scaffolding
    • doi:10.1371, 3811975, 24205335
    • Jiang Y, Ninwichian P, Liu S, Zhang J, Kucuktas H, Sun F, Kaltenboeck L, Sun L, Bao L, Liu Z. Generation of physical map contig-specific sequences useful for whole genome sequence assembly and scaffolding. PloS ONE 2013, 8(13):e78872. doi:10.1371, 3811975, 24205335.
    • (2013) PloS ONE , vol.8 , Issue.13
    • Jiang, Y.1    Ninwichian, P.2    Liu, S.3    Zhang, J.4    Kucuktas, H.5    Sun, F.6    Kaltenboeck, L.7    Sun, L.8    Bao, L.9    Liu, Z.10
  • 66
    • 52449095383 scopus 로고    scopus 로고
    • SynBlast: assisting the analysis of conserved synteny information
    • 10.1186/1471-2105-9-351, 2543028, 18721485
    • Lehmann J, Stadler PF, Prohaska SJ. SynBlast: assisting the analysis of conserved synteny information. BMC Bioinformatics 2008, 9:351. 10.1186/1471-2105-9-351, 2543028, 18721485.
    • (2008) BMC Bioinformatics , vol.9 , pp. 351
    • Lehmann, J.1    Stadler, P.F.2    Prohaska, S.J.3
  • 67
    • 58649118651 scopus 로고    scopus 로고
    • Rapidly evolving fish genomes and teleost diversity
    • 10.1016/j.gde.2008.11.001, 19095434
    • Ravi V, Venkatesh B. Rapidly evolving fish genomes and teleost diversity. Curr Opin Genet Dev 2008, 18(6):544-550. 10.1016/j.gde.2008.11.001, 19095434.
    • (2008) Curr Opin Genet Dev , vol.18 , Issue.6 , pp. 544-550
    • Ravi, V.1    Venkatesh, B.2
  • 68
    • 67849083043 scopus 로고    scopus 로고
    • A microsatellite-based genetic linkage map of the cichlid fish, Astatotilapia burtoni (Teleostei): a comparison of genomic architectures among rapidly speciating cichlids
    • 10.1534/genetics.108.089367, 2674835, 18757932
    • Sanetra M, Henning F, Fukamachi S, Meyer A. A microsatellite-based genetic linkage map of the cichlid fish, Astatotilapia burtoni (Teleostei): a comparison of genomic architectures among rapidly speciating cichlids. Genetics 2009, 182(1):387-397. 10.1534/genetics.108.089367, 2674835, 18757932.
    • (2009) Genetics , vol.182 , Issue.1 , pp. 387-397
    • Sanetra, M.1    Henning, F.2    Fukamachi, S.3    Meyer, A.4
  • 69
    • 33746894220 scopus 로고    scopus 로고
    • Fish genomes, comparative genomics and vertebrate evolution
    • Froschauer A, Braasch I, Volff J-N. Fish genomes, comparative genomics and vertebrate evolution. Curr Genomics 2006, 7(1):43-57.
    • (2006) Curr Genomics , vol.7 , Issue.1 , pp. 43-57
    • Froschauer, A.1    Braasch, I.2    Volff, J.-N.3
  • 70
    • 33646878378 scopus 로고    scopus 로고
    • Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs
    • 10.1007/s00239-005-0170-8, 16752215
    • Steinke D, Salzburger W, Meyer A. Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. J Mol Evol 2006, 62(6):772-784. 10.1007/s00239-005-0170-8, 16752215.
    • (2006) J Mol Evol , vol.62 , Issue.6 , pp. 772-784
    • Steinke, D.1    Salzburger, W.2    Meyer, A.3
  • 71
    • 79251607066 scopus 로고    scopus 로고
    • Comparative genomics in teleost species: Knowledge transfer by linking the genomes of model and non-model fish species
    • Sarropoulou E, Fernandes JMO. Comparative genomics in teleost species: Knowledge transfer by linking the genomes of model and non-model fish species. Comp Biochem Physiol D Genom Proteomics 2011, 6:92-102.
    • (2011) Comp Biochem Physiol D Genom Proteomics , vol.6 , pp. 92-102
    • Sarropoulou, E.1    Fernandes, J.M.O.2
  • 72
    • 35548954250 scopus 로고    scopus 로고
    • The evolutionary consequences of polyploidy
    • 10.1016/j.cell.2007.10.022, 17981114
    • Otto SP. The evolutionary consequences of polyploidy. Cell 2007, 131(3):452-462. 10.1016/j.cell.2007.10.022, 17981114.
    • (2007) Cell , vol.131 , Issue.3 , pp. 452-462
    • Otto, S.P.1
  • 73
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: software for the graphical presentation of linkage maps and QTLs
    • 10.1093/jhered/93.1.77, 12011185
    • Voorrips RE. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 2002, 93(1):77-78. 10.1093/jhered/93.1.77, 12011185.
    • (2002) J Hered , vol.93 , Issue.1 , pp. 77-78
    • Voorrips, R.E.1


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