-
1
-
-
22744440499
-
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
-
Murphy WJ, Larkin DM, Everts-van der Wind A, et al. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science (New York, N.Y.) 2005, 309:613-617.
-
(2005)
Science (New York, N.Y.)
, vol.309
, pp. 613-617
-
-
Murphy, W.J.1
Larkin, D.M.2
Everts-van der Wind, A.3
-
2
-
-
33646936902
-
Dissecting the mammalian genome-new insights into chromosomal evolution
-
10.1016/j.tig.2006.04.002, 16678302
-
Robinson TJ, Ruiz-Herrera A, Froenicke L. Dissecting the mammalian genome-new insights into chromosomal evolution. Trends Genet 2006, 22:297-301. 10.1016/j.tig.2006.04.002, 16678302.
-
(2006)
Trends Genet
, vol.22
, pp. 297-301
-
-
Robinson, T.J.1
Ruiz-Herrera, A.2
Froenicke, L.3
-
3
-
-
33745067419
-
The gain and loss of genes during 600 million years of vertebrate evolution
-
10.1186/gb-2006-7-5-r43, 1779523, 16723033
-
Blomme T, Vandepoele K, De Bodt S, et al. The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol 2006, 7:R43. 10.1186/gb-2006-7-5-r43, 1779523, 16723033.
-
(2006)
Genome Biol
, vol.7
-
-
Blomme, T.1
Vandepoele, K.2
De Bodt, S.3
-
4
-
-
34648825194
-
Ancestral animal genomes reconstruction
-
10.1016/j.coi.2007.06.009, 17702562
-
Rascol VL, Pontarotti P, Levasseur A. Ancestral animal genomes reconstruction. Curr Opin Immunol 2007, 19:542-546. 10.1016/j.coi.2007.06.009, 17702562.
-
(2007)
Curr Opin Immunol
, vol.19
, pp. 542-546
-
-
Rascol, V.L.1
Pontarotti, P.2
Levasseur, A.3
-
5
-
-
1242274629
-
Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates
-
10.1073/pnas.0307968100, 341801, 14757817
-
Vandepoele K, De Vos W, Taylor JS, Meyer A, Van de Peer Y. Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci USA 2004, 101:1638-1643. 10.1073/pnas.0307968100, 341801, 14757817.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1638-1643
-
-
Vandepoele, K.1
De Vos, W.2
Taylor, J.S.3
Meyer, A.4
Van de Peer, Y.5
-
6
-
-
7244259101
-
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
-
10.1038/nature03025, 15496914
-
Jaillon O, Aury J-M, Brunet F, et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 2004, 431:946-957. 10.1038/nature03025, 15496914.
-
(2004)
Nature
, vol.431
, pp. 946-957
-
-
Jaillon, O.1
Aury, J.-M.2
Brunet, F.3
-
7
-
-
33746894220
-
Fish genomes, comparative genomics and vertebrate evolution
-
Froschauer A, Braasch I, Volff JN. Fish genomes, comparative genomics and vertebrate evolution. Curr Genom 2006, 7:43-57.
-
(2006)
Curr Genom
, vol.7
, pp. 43-57
-
-
Froschauer, A.1
Braasch, I.2
Volff, J.N.3
-
8
-
-
24644486449
-
Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis
-
10.1016/j.tig.2005.08.004, 16099069
-
Panopoulou G, Poustka AJ. Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis. Trends Genet 2005, 21:559-567. 10.1016/j.tig.2005.08.004, 16099069.
-
(2005)
Trends Genet
, vol.21
, pp. 559-567
-
-
Panopoulou, G.1
Poustka, A.J.2
-
9
-
-
33746117256
-
Phylogenetic conservation of chromosome numbers in Actinopterygiian fishes
-
10.1007/s10709-005-5248-0, 16850236
-
Mank JE, Avise JC. Phylogenetic conservation of chromosome numbers in Actinopterygiian fishes. Genetica 2006, 127:321-327. 10.1007/s10709-005-5248-0, 16850236.
-
(2006)
Genetica
, vol.127
, pp. 321-327
-
-
Mank, J.E.1
Avise, J.C.2
-
10
-
-
2442697672
-
A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping
-
10.1101/gr.2004004, 479108, 15078856
-
Naruse K, Tanaka M, Mita K, et al. A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping. Genome Res 2004, 14:820-828. 10.1101/gr.2004004, 479108, 15078856.
-
(2004)
Genome Res
, vol.14
, pp. 820-828
-
-
Naruse, K.1
Tanaka, M.2
Mita, K.3
-
11
-
-
24344440632
-
The zebrafish gene map defines ancestral vertebrate chromosomes
-
10.1101/gr.4134305, 1199546, 16109975
-
Woods IG, Wilson C, Friedlander B, et al. The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res 2005, 15:1307. 10.1101/gr.4134305, 1199546, 16109975.
-
(2005)
Genome Res
, vol.15
, pp. 1307
-
-
Woods, I.G.1
Wilson, C.2
Friedlander, B.3
-
12
-
-
34548420992
-
Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates
-
10.1101/gr.6316407, 1950894, 17652425
-
Nakatani Y, Takeda H, Kohara Y, Morishita S. Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Res 2007, 17:1254. 10.1101/gr.6316407, 1950894, 17652425.
-
(2007)
Genome Res
, vol.17
, pp. 1254
-
-
Nakatani, Y.1
Takeda, H.2
Kohara, Y.3
Morishita, S.4
-
13
-
-
20444423961
-
Piggy-BACing the human genome II. A high-resolution, physically anchored, comparative map of the porcine autosomes
-
10.1016/j.ygeno.2005.04.010, 16246521
-
Meyers SN, Rogatcheva MB, Larkin DM, et al. Piggy-BACing the human genome II. A high-resolution, physically anchored, comparative map of the porcine autosomes. Genomics 2005, 86:739-752. 10.1016/j.ygeno.2005.04.010, 16246521.
-
(2005)
Genomics
, vol.86
, pp. 739-752
-
-
Meyers, S.N.1
Rogatcheva, M.B.2
Larkin, D.M.3
-
14
-
-
0036175484
-
Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition
-
10.1101/gr.224202, 11827942
-
Grisart B, Coppieters W, Farnir F, et al. Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res 2002, 12:222-231. 10.1101/gr.224202, 11827942.
-
(2002)
Genome Res
, vol.12
, pp. 222-231
-
-
Grisart, B.1
Coppieters, W.2
Farnir, F.3
-
15
-
-
0036900974
-
Status and opportunities for genomics research with rainbow trout
-
10.1016/S1096-4959(02)00167-7, 12470823
-
Thorgaard GH, Bailey GS, Williams D, et al. Status and opportunities for genomics research with rainbow trout. Comp Biochem Physiol B Biochem Mol Biol 2002, 133:609-646. 10.1016/S1096-4959(02)00167-7, 12470823.
-
(2002)
Comp Biochem Physiol B Biochem Mol Biol
, vol.133
, pp. 609-646
-
-
Thorgaard, G.H.1
Bailey, G.S.2
Williams, D.3
-
16
-
-
0000624106
-
Diploid-tetraploid relationship in clupeoid and salmonoid fish
-
Ohno S, Muramoto J, Klein J, Atkin N. Diploid-tetraploid relationship in clupeoid and salmonoid fish. Chromosom Today 1969, 2:139-147.
-
(1969)
Chromosom Today
, vol.2
, pp. 139-147
-
-
Ohno, S.1
Muramoto, J.2
Klein, J.3
Atkin, N.4
-
17
-
-
33748697895
-
Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries
-
10.1186/1471-2164-7-196, 1564016, 16887034
-
Govoroun M, Le Gac F, Guiguen Y. Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries. BMC Genomics 2006, 7:196. 10.1186/1471-2164-7-196, 1564016, 16887034.
-
(2006)
BMC Genomics
, vol.7
, pp. 196
-
-
Govoroun, M.1
Le Gac, F.2
Guiguen, Y.3
-
18
-
-
77957741517
-
Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
-
10.1186/1471-2164-11-564, 3091713, 20942956
-
Salem M, Rexroad CE, Wang J, Thorgaard GH, Yao J. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. BMC Genomics 2010, 11:564. 10.1186/1471-2164-11-564, 3091713, 20942956.
-
(2010)
BMC Genomics
, vol.11
, pp. 564
-
-
Salem, M.1
Rexroad, C.E.2
Wang, J.3
Thorgaard, G.H.4
Yao, J.5
-
19
-
-
79959645692
-
Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes
-
10.1186/1471-2164-12-314, 3125269, 21672188
-
Genet C, Dehais P, Palti Y, et al. Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes. BMC Genomics 2011, 12:314. 10.1186/1471-2164-12-314, 3125269, 21672188.
-
(2011)
BMC Genomics
, vol.12
, pp. 314
-
-
Genet, C.1
Dehais, P.2
Palti, Y.3
-
20
-
-
70449513697
-
A first generation BAC-based physical map of the rainbow trout genome
-
10.1186/1471-2164-10-462, 2763887, 19814815
-
Palti Y, Luo M-C, Hu Y, et al. A first generation BAC-based physical map of the rainbow trout genome. BMC Genomics 2009, 10:462. 10.1186/1471-2164-10-462, 2763887, 19814815.
-
(2009)
BMC Genomics
, vol.10
, pp. 462
-
-
Palti, Y.1
Luo, M.-C.2
Hu, Y.3
-
21
-
-
33845710168
-
A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms
-
10.1186/1471-2164-7-302, 1698487, 17137492
-
Guyomard R, Mauger S, Tabet-Canale K, et al. A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms. BMC Genomics 2006, 7:302. 10.1186/1471-2164-7-302, 1698487, 17137492.
-
(2006)
BMC Genomics
, vol.7
, pp. 302
-
-
Guyomard, R.1
Mauger, S.2
Tabet-Canale, K.3
-
22
-
-
60849126112
-
Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)
-
10.1186/1471-2164-9-557, 2632648, 19032764
-
Danzmann RG, Davidson EA, Ferguson MM, et al. Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon). BMC Genomics 2008, 9:557. 10.1186/1471-2164-9-557, 2632648, 19032764.
-
(2008)
BMC Genomics
, vol.9
, pp. 557
-
-
Danzmann, R.G.1
Davidson, E.A.2
Ferguson, M.M.3
-
23
-
-
58049215494
-
A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
-
Rexroad CE, Palti Y, Gahr SA, Vallejo RL. A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BMC Gen 2008, 9:74.
-
(2008)
BMC Gen
, vol.9
, pp. 74
-
-
Rexroad, C.E.1
Palti, Y.2
Gahr, S.A.3
Vallejo, R.L.4
-
24
-
-
79953706608
-
A first generation integrated map of the rainbow trout genome
-
10.1186/1471-2164-12-180, 3079668, 21473775
-
Palti Y, Genet C, Luo M-C, et al. A first generation integrated map of the rainbow trout genome. BMC Genomics 2011, 12:180. 10.1186/1471-2164-12-180, 3079668, 21473775.
-
(2011)
BMC Genomics
, vol.12
, pp. 180
-
-
Palti, Y.1
Genet, C.2
Luo, M.-C.3
-
25
-
-
84861869657
-
Production of a Draft Reference Genome Sequence for Rainbow Trout
-
Production of a Draft Reference Genome Sequence for Rainbow Trout. , http://www.ars.usda.gov/research/projects/projects.htm?ACCN_NO=419700
-
-
-
-
26
-
-
84861853093
-
Genotrout Séquençage du génome de la truite arc-en-ciel par l'utilisation des nouvelles techniques de séquençage à ultra haut débit
-
Genotrout Séquençage du génome de la truite arc-en-ciel par l'utilisation des nouvelles techniques de séquençage à ultra haut débit. , http://www4.rennes.inra.fr/scribe/Les-recherches/Programmes-nationaux-et-internationaux-en-cours/Genotrout
-
-
-
-
27
-
-
79251607066
-
Comparative genomics in teleost species: Knowledge transfer by linking the genomes of model and non-model fish species
-
10.1016/j.cbd.2010.09.003, 20961822
-
Sarropoulou E, Fernandes JMO. Comparative genomics in teleost species: Knowledge transfer by linking the genomes of model and non-model fish species. Comp Biochem Physiol Part D Genomics Proteomics 2011, 6:92-102. 10.1016/j.cbd.2010.09.003, 20961822.
-
(2011)
Comp Biochem Physiol Part D Genomics Proteomics
, vol.6
, pp. 92-102
-
-
Sarropoulou, E.1
Fernandes, J.M.O.2
-
28
-
-
79952163548
-
Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes
-
10.1093/molbev/msq304, 21081479
-
Lee AP, Kerk SY, Tan YY, Brenner S, Venkatesh B. Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes. Mol Biol Evol 2011, 28:1205-1215. 10.1093/molbev/msq304, 21081479.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1205-1215
-
-
Lee, A.P.1
Kerk, S.Y.2
Tan, Y.Y.3
Brenner, S.4
Venkatesh, B.5
-
29
-
-
15944388958
-
Fish as models for environmental genomics
-
10.1038/nrg1590, 15803200
-
Cossins AR, Crawford DL. Fish as models for environmental genomics. Nat Rev Genet 2005, 6:324-333. 10.1038/nrg1590, 15803200.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 324-333
-
-
Cossins, A.R.1
Crawford, D.L.2
-
30
-
-
0034691216
-
The role of genetic and genomic attributes in the success of polyploids
-
10.1073/pnas.97.13.7051, 34383, 10860970
-
Soltis PS, Soltis DE. The role of genetic and genomic attributes in the success of polyploids. Proc Natl Acad Sci 2000, 97:7051. 10.1073/pnas.97.13.7051, 34383, 10860970.
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 7051
-
-
Soltis, P.S.1
Soltis, D.E.2
-
31
-
-
32244432718
-
A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family)
-
10.1139/g05-067, 16391673
-
Danzmann R, Cairney M, Ferguson M, et al. A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family). Genome 2005, 48:1037-1051. 10.1139/g05-067, 16391673.
-
(2005)
Genome
, vol.48
, pp. 1037-1051
-
-
Danzmann, R.1
Cairney, M.2
Ferguson, M.3
-
32
-
-
33646188556
-
A linkage map for brown trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish
-
1456399, 16452148
-
Gharbi K, Gautier A, Danzmann RG, et al. A linkage map for brown trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish. Genetics 2006, 172:2405-2419. 1456399, 16452148.
-
(2006)
Genetics
, vol.172
, pp. 2405-2419
-
-
Gharbi, K.1
Gautier, A.2
Danzmann, R.G.3
-
33
-
-
33847653643
-
Rearrangement rate following the whole-genome duplication in teleosts
-
Sémon M, Wolfe KH. Rearrangement rate following the whole-genome duplication in teleosts. Mol Biol Evol 2007, 24:860-867.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 860-867
-
-
Sémon, M.1
Wolfe, K.H.2
-
34
-
-
53549093299
-
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement
-
10.1101/gr.080119.108, 2556266, 18625908
-
Hufton AL, Groth D, Vingron M, et al. Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Res 2008, 18:1582. 10.1101/gr.080119.108, 2556266, 18625908.
-
(2008)
Genome Res
, vol.18
, pp. 1582
-
-
Hufton, A.L.1
Groth, D.2
Vingron, M.3
-
35
-
-
34249994907
-
The medaka draft genome and insights into vertebrate genome evolution
-
10.1038/nature05846, 17554307
-
Kasahara M, Naruse K, Sasaki S, et al. The medaka draft genome and insights into vertebrate genome evolution. Nature 2007, 447:714-719. 10.1038/nature05846, 17554307.
-
(2007)
Nature
, vol.447
, pp. 714-719
-
-
Kasahara, M.1
Naruse, K.2
Sasaki, S.3
-
36
-
-
0043123037
-
Mreps: efficient and flexible detection of tandem repeats in DNA
-
10.1093/nar/gkg617, 169196, 12824391
-
Kolpakov R. mreps: efficient and flexible detection of tandem repeats in DNA. Nucleic Acids Res 2003, 31:3672-3678. 10.1093/nar/gkg617, 169196, 12824391.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3672-3678
-
-
Kolpakov, R.1
-
37
-
-
51349134843
-
Salmonid Specific Repeat Masker
-
Salmonid Specific Repeat Masker. , http://grasp.mbb.sfu.ca/GRASPRepetitive.html
-
-
-
-
38
-
-
34547591343
-
Primer3Plus, an enhanced web interface to Primer3
-
10.1093/nar/gkm306, 1933133, 17485472
-
Untergasser A, Nijveen H, Rao X, et al. Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res 2007, 35:W71-W74. 10.1093/nar/gkm306, 1933133, 17485472.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Untergasser, A.1
Nijveen, H.2
Rao, X.3
-
39
-
-
17444404610
-
CARTHAGENE: multipopulation integrated genetic and radiation hybrid mapping
-
de Givry S, Bouchez M, Chabrier P, Milan D, Schiex T. CARTHAGENE: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics (Oxford, England) 2005, 21:1703-1704.
-
(2005)
Bioinformatics (Oxford, England)
, vol.21
, pp. 1703-1704
-
-
de Givry, S.1
Bouchez, M.2
Chabrier, P.3
Milan, D.4
Schiex, T.5
-
40
-
-
0036256695
-
MapChart: Software for the Graphical Presentation of Linkage Maps and QTLs
-
10.1093/jhered/93.1.77, 12011185
-
Voorrips RE. MapChart: Software for the Graphical Presentation of Linkage Maps and QTLs. J Hered 2002, 93:77-78. 10.1093/jhered/93.1.77, 12011185.
-
(2002)
J Hered
, vol.93
, pp. 77-78
-
-
Voorrips, R.E.1
-
41
-
-
33751334806
-
Assignment of rainbow trout linkage groups to specific chromosomes
-
10.1534/genetics.105.055269, 1667062, 16951085
-
Phillips RB, Nichols KM, DeKoning JJ, et al. Assignment of rainbow trout linkage groups to specific chromosomes. Genetics 2006, 174:1661. 10.1534/genetics.105.055269, 1667062, 16951085.
-
(2006)
Genetics
, vol.174
, pp. 1661
-
-
Phillips, R.B.1
Nichols, K.M.2
DeKoning, J.J.3
|