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Volumn 9, Issue , 2008, Pages

A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ATLANTIC SALMON; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; EXPRESSED SEQUENCE TAG; FEMALE; GENDER BIAS; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENETIC DISTANCE; GENETIC RECOMBINATION; LINKAGE ANALYSIS; MALE; MICROSATELLITE MARKER; NONHUMAN; SINGLE NUCLEOTIDE POLYMORPHISM; TELOMERE; ANIMAL; CHROMOSOME MAP; GENETICS; SEXUAL DEVELOPMENT;

EID: 44449161026     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-223     Document Type: Article
Times cited : (140)

References (55)
  • 1
    • 0002590589 scopus 로고
    • Tetraploidy and the evolution of salmonid fishes
    • New York, Plenum Press Turner BJ
    • Allendorf FW Thorgaard GH Tetraploidy and the evolution of salmonid fishes Evolutionary Genetics of Fishes New York, Plenum Press Turner BJ 1984:1-46.
    • (1984) Evolutionary Genetics of Fishes , pp. 1-46
    • Allendorf, F.W.1    Thorgaard, G.H.2
  • 3
    • 0019034628 scopus 로고
    • Pseudolinkage of the duplicate loci for supernatant aspartate aminotransferase in brook trout, Salvelinus fontinalis
    • 6774006
    • Wright JE May B Stoneking M Lee GM Pseudolinkage of the duplicate loci for supernatant aspartate aminotransferase in brook trout, Salvelinus fontinalis J Hered 1980, 71:223-228. 6774006
    • (1980) J Hered , vol.71 , pp. 223-228
    • Wright, J.E.1    May, B.2    Stoneking, M.3    Lee, G.M.4
  • 4
    • 0003703297 scopus 로고
    • The salmonid genome: Evolutionary restructuring following a tetraploid event
    • PhD thesis. Pennsylvania State University Ph.D
    • May B The salmonid genome: Evolutionary restructuring following a tetraploid event. PhD thesis. Pennsylvania State University 1980. Ph.D
    • (1980)
    • May, B.1
  • 5
    • 0020654883 scopus 로고
    • Meiotic models to explain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonids genomes
    • 6354984
    • Wright JE Johnson K Hollister A May B Meiotic models to explain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonids genomes Isozymes Curr Top Biol Med Res 1983, 10:239-260. 6354984
    • (1983) Isozymes Curr Top Biol Med Res , vol.10 , pp. 239-260
    • Wright, J.E.1    Johnson, K.2    Hollister, A.3    May, B.4
  • 6
    • 0023390513 scopus 로고
    • Linkage relationships reflecting ancestral tetraploidy in salmonid fish
    • 1203170 3623080
    • Johnson K Wright JE May B Linkage relationships reflecting ancestral tetraploidy in salmonid fish. Genetics 1987, 116:579-591. 1203170 3623080
    • (1987) Genetics , vol.116 , pp. 579-591
    • Johnson, K.1    Wright, J.E.2    May, B.3
  • 7
    • 0030972920 scopus 로고    scopus 로고
    • Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in rainbow trout
    • 1207878 9093860
    • Allendorf FW Danzmann R Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in rainbow trout Genetics 1997, 145:1083-1092. 1207878 9093860
    • (1997) Genetics , vol.145 , pp. 1083-1092
    • Allendorf, F.W.1    Danzmann, R.2
  • 8
    • 0035096956 scopus 로고    scopus 로고
    • Chromosome evolution in the Salmonidae (Pisces): An update
    • 10.1017/S1464793100005613
    • Phillips RB Rab P Chromosome evolution in the Salmonidae (Pisces): An update. Biol Rev (Camb) 2001, 76:1-25. 10.1017/S1464793100005613
    • (2001) Biol Rev (Camb) , vol.76 , pp. 1-25
    • Phillips, R.B.1    Rab, P.2
  • 10
    • 1842766267 scopus 로고    scopus 로고
    • A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes
    • 10.1111/j.1365-2052.2004.01097.x 15025566
    • Moen T Høyheim B Munck H Gomez-Raya L A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes Animal Genetics 2004, 35(2):81-92. 10.1111/j.1365-2052.2004.01097.x 15025566
    • (2004) Animal Genetics , vol.35 , Issue.2 , pp. 81-92
    • Moen, T.1    Høyheim, B.2    Munck, H.3    Gomez-Raya, L.4
  • 11
    • 0348231044 scopus 로고    scopus 로고
    • A genetic linkage map for Arctic char (Salvelinus alpinus): Evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents
    • 15060583
    • Woram RA McGowan C Stout JA Gharbi K Ferguson MM Høyheim B Davidson EA Davidson WS Rexroad C Danzmann R A genetic linkage map for Arctic char (Salvelinus alpinus): Evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents Genome 2004, 47:304-315. 15060583
    • (2004) Genome , vol.47 , pp. 304-315
    • Woram, R.A.1    McGowan, C.2    Stout, J.A.3    Gharbi, K.4    Ferguson, M.M.5    Høyheim, B.6    Davidson, E.A.7    Davidson, W.S.8    Rexroad, C.9    Danzmann, R.10
  • 14
    • 1842715739 scopus 로고    scopus 로고
    • A microsatellite linkage map for Atlantic salmon (Salmo salar)
    • 10.1111/j.1365-2052.2004.01091.x 15025568
    • Gilbey J Verspoor E McLay A Houlihan D A microsatellite linkage map for Atlantic salmon (Salmo salar). Animal Genetics 2004, 35:98-105. 10.1111/ j.1365-2052.2004.01091.x 15025568
    • (2004) Animal Genetics , vol.35 , pp. 98-105
    • Gilbey, J.1    Verspoor, E.2    McLay, A.3    Houlihan, D.4
  • 15
    • 44449156473 scopus 로고    scopus 로고
    • ASalBase
    • ASalBase http://www.asalbase.org
  • 18
    • 34047264454 scopus 로고    scopus 로고
    • An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences
    • 10.1016/j.aquaculture.2007.01.037
    • Hayes B Lærdahl JK Lien S Moen T Berg P Hindar K Davidson WS Koop BF Adzhubei A Høyheim B An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences Aquaculture 2007, 265:82-90. 10.1016/ j.aquaculture.2007.01.037
    • (2007) Aquaculture , vol.265 , pp. 82-90
    • Hayes, B.1    Lærdahl, J.K.2    Lien, S.3    Moen, T.4    Berg, P.5    Hindar, K.6    Davidson, W.S.7    Koop, B.F.8    Adzhubei, A.9    Høyheim, B.10
  • 19
    • 34547844090 scopus 로고    scopus 로고
    • SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates
    • 10.1093/bioinformatics/btm154 17463019
    • Hayes BJ Nilsen K Berg PR Grindflek E Lien S SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates Bioinformatics 2007, 23:1692-1693. 10.1093/ bioinformatics/btm154 17463019
    • (2007) Bioinformatics , vol.23 , pp. 1692-1693
    • Hayes, B.J.1    Nilsen, K.2    Berg, P.R.3    Grindflek, E.4    Lien, S.5
  • 20
    • 34250782598 scopus 로고    scopus 로고
    • Admixture and patterns of linkage disequilibrium in a free-living vertebrate population
    • 10.1111/j.1420-9101.2007.01339.x 17584236
    • Slate J Pemberson JM Admixture and patterns of linkage disequilibrium in a free-living vertebrate population Journal of Evolutionary Biology 2007, 20:1415-1427. 10.1111/j.1420-9101.2007.01339.x 17584236
    • (2007) Journal of Evolutionary Biology , vol.20 , pp. 1415-1427
    • Slate, J.1    Pemberson, J.M.2
  • 24
    • 1942421741 scopus 로고    scopus 로고
    • Linkage Disequilibrium in the Domesticated Pig
    • 1470762 15082558 10.1534/genetics.166.3.1395
    • Nsengimana J Baret P Haley CS Visscher PM Linkage Disequilibrium in the Domesticated Pig Genetics 2004, 166:1395-1404. 1470762 15082558 10.1534/ genetics.166.3.1395
    • (2004) Genetics , vol.166 , pp. 1395-1404
    • Nsengimana, J.1    Baret, P.2    Haley, C.S.3    Visscher, P.M.4
  • 26
    • 33748662861 scopus 로고    scopus 로고
    • Levels of linkage disequilibrium in a wild bird population
    • 1686206 17148424 10.1098/rsbl.2006.0507
    • Backström N Qvarnström A Gustafsson L Ellegren H Levels of linkage disequilibrium in a wild bird population Biology Letters 2006, 2:435-438. 1686206 17148424 10.1098/rsbl.2006.0507
    • (2006) Biology Letters , vol.2 , pp. 435-438
    • Backström, N.1    Qvarnström, A.2    Gustafsson, L.3    Ellegren, H.4
  • 27
    • 0021207141 scopus 로고
    • Chromosome polymorphism and constitutive heterochromatin in the Atlantic salmon, Salmo salar
    • 10.1007/BF00331255
    • Hartley SE Horne MT Chromosome polymorphism and constitutive heterochromatin in the Atlantic salmon, Salmo salar Chromosoma 1984, 89:377-380. 10.1007/BF00331255
    • (1984) Chromosoma , vol.89 , pp. 377-380
    • Hartley, S.E.1    Horne, M.T.2
  • 28
    • 0015787949 scopus 로고
    • Cytogenetic analysis of pseudolinkage of LDH loci in the teleost genus Salvelinus
    • 1212921 17248602
    • Davisson MT Wright JE Atherton LM Cytogenetic analysis of pseudolinkage of LDH loci in the teleost genus Salvelinus Genetics 1973, 73:645-658. 1212921 17248602
    • (1973) Genetics , vol.73 , pp. 645-658
    • Davisson, M.T.1    Wright, J.E.2    Atherton, L.M.3
  • 29
    • 35148893994 scopus 로고    scopus 로고
    • Mapping of a quantitative trait locus for resistance against infectious salmon anaemia in Atlantic salmon (Salmo Salar): Comparing survival analysis with analysis on affected/resistant data
    • 2000910 17697344 10.1186/1471-2156-8-53
    • Moen T Sonesson AK Hayes B Lien S Munck H Meuwissen THE Mapping of a quantitative trait locus for resistance against infectious salmon anaemia in Atlantic salmon (Salmo Salar): Comparing survival analysis with analysis on affected/resistant data. BMC Genetics 2007, 8:53. 2000910 17697344 10.1186/1471-2156-8-53
    • (2007) BMC Genetics , vol.8 , pp. 53
    • Moen, T.1    Sonesson, A.K.2    Hayes, B.3    Lien, S.4    Munck, H.5    Meuwissen, T.H.E.6
  • 30
    • 0000312931 scopus 로고
    • Gene-centromere mapping in rainbow trout: High interference over long map distances
    • 1202053 17246124
    • Thorgaard GH Allendorf FW Knudsen KL Gene-centromere mapping in rainbow trout: High interference over long map distances Genetics 1983, 103:771-783. 1202053 17246124
    • (1983) Genetics , vol.103 , pp. 771-783
    • Thorgaard, G.H.1    Allendorf, F.W.2    Knudsen, K.L.3
  • 31
    • 0022666826 scopus 로고
    • Segregation analyses and gene-centromere distances in zebrafish
    • 1202703 3455686
    • Streisinger GF Singer F Walker C Knauber D Dower N Segregation analyses and gene-centromere distances in zebrafish Genetics 1986, 112:311-319. 1202703 3455686
    • (1986) Genetics , vol.112 , pp. 311-319
    • Streisinger, G.F.1    Singer, F.2    Walker, C.3    Knauber, D.4    Dower, N.5
  • 33
    • 0033853966 scopus 로고    scopus 로고
    • Gene-centromere mapping of 312 loci in pink salmon by half-tetrad analysis
    • 10.1139/gen-43-3-538 10902719
    • Lindner KR Seeb JE Habicht C Knudsen KL Kretschmer E Gene-centromere mapping of 312 loci in pink salmon by half-tetrad analysis Genome 2000, 43:538-549. 10.1139/gen-43-3-538 10902719
    • (2000) Genome , vol.43 , pp. 538-549
    • Lindner, K.R.1    Seeb, J.E.2    Habicht, C.3    Knudsen, K.L.4    Kretschmer, E.5
  • 34
    • 33747855308 scopus 로고    scopus 로고
    • Identification of genetic markers associated with Gyrodactylus salaris resistance in Atlantic salmon Salmo salar
    • 10.3354/dao071119 16956059
    • Gilbey J Verspoor E Mo TA Sterud E Olstad K Hytterød S Jones C Noble L Identification of genetic markers associated with Gyrodactylus salaris resistance in Atlantic salmon Salmo salar Dis Aquat Organ 2006, 71:119-129. 10.3354/dao071119 16956059
    • (2006) Dis Aquat Organ , vol.71 , pp. 119-129
    • Gilbey, J.1    Verspoor, E.2    Mo, T.A.3    Sterud, E.4    Olstad, K.5    Hytterød, S.6    Jones, C.7    Noble, L.8
  • 35
    • 0033915978 scopus 로고    scopus 로고
    • The effect of marker characteristics on the power to detect linkage disequilibrium due to single or multiple ancestral mutations
    • 10.1046/j.1469-1809.2000.6420161.x 11246469
    • Sham PC Zhao JH Curtis D The effect of marker characteristics on the power to detect linkage disequilibrium due to single or multiple ancestral mutations Annals of Human Genetics 2000, 64(2):161-169. 10.1046/j.1469-1809.2000.6420161.x 11246469
    • (2000) Annals of Human Genetics , vol.64 , Issue.2 , pp. 161-169
    • Sham, P.C.1    Zhao, J.H.2    Curtis, D.3
  • 36
    • 0037234025 scopus 로고    scopus 로고
    • The interval of linkage disequilibrium (LD) detected with microsatellite and SNP markers in chromosomes of Finnish populations with different histories
    • 10.1093/hmg/ddg005 12490532
    • Varilo T Paunio T Parker A Perola M Meyer J Terwilliger JD Peltonen L The interval of linkage disequilibrium (LD) detected with microsatellite and SNP markers in chromosomes of Finnish populations with different histories Human Molecular Genetics 2003, 12(1):51-59. 10.1093/hmg/ddg005 12490532
    • (2003) Human Molecular Genetics , vol.12 , Issue.1 , pp. 51-59
    • Varilo, T.1    Paunio, T.2    Parker, A.3    Perola, M.4    Meyer, J.5    Terwilliger, J.D.6    Peltonen, L.7
  • 37
    • 0036468808 scopus 로고    scopus 로고
    • Linkage disequilibrium: What history has to tell us
    • 10.1016/S0168-9525(02)02557-X 11818140
    • Nordborg M Tavaré S Linkage disequilibrium: What history has to tell us Trends Genet 2002, 18:83-89. 10.1016/S0168-9525(02)02557-X 11818140
    • (2002) Trends Genet , vol.18 , pp. 83-89
    • Nordborg, M.1    Tavaré, S.2
  • 38
    • 0036563217 scopus 로고    scopus 로고
    • Sampling distribution of summary linkage disequilibrium measures
    • 10.1046/j.1469-1809.2002.00108.x 12174213
    • Teare M Dunning A Durocher F Rennart G Easton D Sampling distribution of summary linkage disequilibrium measures Annals of Human Genetics 2002, 66(3):223-233. 10.1046/j.1469-1809.2002.00108.x 12174213
    • (2002) Annals of Human Genetics , vol.66 , Issue.3 , pp. 223-233
    • Teare, M.1    Dunning, A.2    Durocher, F.3    Rennart, G.4    Easton, D.5
  • 39
    • 0026340305 scopus 로고
    • Genetic origin of Norwegian farmed Atlantic salmon
    • 10.1016/0044-8486(91)90369-I
    • Gjedrem T Gjøen HM Gjerde B Genetic origin of Norwegian farmed Atlantic salmon Aquaculture 1991, 98:41-50. 10.1016/0044-8486(91)90369-I
    • (1991) Aquaculture , vol.98 , pp. 41-50
    • Gjedrem, T.1    Gjøen, H.M.2    Gjerde, B.3
  • 40
    • 0033039497 scopus 로고    scopus 로고
    • Prospects for whole-genome linkage disequilibrium mapping of common disease genes
    • 10.1038/9642 10369254
    • Kruglyak L Prospects for whole-genome linkage disequilibrium mapping of common disease genes Nature genetics 1999, 22(2):139-144. 10.1038/9642 10369254
    • (1999) Nature Genetics , vol.22 , Issue.2 , pp. 139-144
    • Kruglyak, L.1
  • 41
    • 0036208832 scopus 로고    scopus 로고
    • Patterns of linkage disequilibrium in the human genome
    • 10.1038/nrg777 11967554
    • Ardlie KG Kruglyak L Seielstad M Patterns of linkage disequilibrium in the human genome Nature Reviews Genetics 2002, 3:299-309. 10.1038/nrg777 11967554
    • (2002) Nature Reviews Genetics , vol.3 , pp. 299-309
    • Ardlie, K.G.1    Kruglyak, L.2    Seielstad, M.3
  • 42
    • 44449113847 scopus 로고    scopus 로고
    • CIGENE
    • CIGENE http://www.cigene.no
  • 43
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing B Hillier L Wendl CW Green P Base-calling of automated sequencer traces using Phred. I. Accuracy assessment Genome Research 1998, 8:175-185.
    • (1998) Genome Research , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, C.W.3    Green, P.4
  • 47
    • 44449108237 scopus 로고    scopus 로고
    • Sequenom
    • Sequenom http://www.sequenom.com
  • 50
    • 44449084474 scopus 로고    scopus 로고
    • cGRASP
    • cGRASP http://www.uvic.ca/cbr/grasp
  • 52
    • 0034017850 scopus 로고    scopus 로고
    • GOLD - Graphical overview of linkage disequilibrium
    • 10.1093/bioinformatics/16.2.182 10842743
    • Abecasis GR Cookson WO GOLD - graphical overview of linkage disequilibrium. Bioinformatics 2000, 16:182-183. 10.1093/bioinformatics/ 16.2.182 10842743
    • (2000) Bioinformatics , vol.16 , pp. 182-183
    • Abecasis, G.R.1    Cookson, W.O.2
  • 53
    • 0003507294 scopus 로고
    • 518059 Princeton, New Jersey, USA, Princeton University Press 518059 16561083
    • Cramer H Mathematical Models of Statistics Princeton, New Jersey, USA, Princeton University Press 1946. 518059 16561083
    • (1946) Mathematical Models of Statistics
    • Cramer, H.1
  • 54
    • 0019771734 scopus 로고
    • Estimation of effective population size from data on linkage disequilibrium
    • Hill WG Estimation of effective population size from data on linkage disequilibrium. Genetical Research 1981, 38:209-216.
    • (1981) Genetical Research , vol.38 , pp. 209-216
    • Hill, W.G.1
  • 55
    • 0015070635 scopus 로고
    • Linkage disequilibrium and homozygosity of chromosome segments in finite populations
    • 10.1016/0040-5809(71)90011-6 5170716
    • Sved JA Linkage disequilibrium and homozygosity of chromosome segments in finite populations Theoretical Population Biology 1971, 2:124-141. 10.1016/0040-5809(71)90011-6 5170716
    • (1971) Theoretical Population Biology , vol.2 , pp. 124-141
    • Sved, J.A.1


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