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Volumn 14, Issue 3, 2004, Pages 478-490

Development and application of a salmonid EST database and cDNA microarray: Data mining and interspecific hybridization characteristics

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; XENOBIOTIC AGENT;

EID: 12144288565     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.1687304     Document Type: Article
Times cited : (280)

References (50)
  • 1
    • 0030972920 scopus 로고    scopus 로고
    • Secondary tetrasomic segregation of MDH-B and preferential pairing of homologues in rainbow trout
    • Allendorf, F.W. and Danzmann, R.G. 1997. Secondary tetrasomic segregation of MDH-B and preferential pairing of homologues in rainbow trout. Genetics 145: 1083-1092.
    • (1997) Genetics , vol.145 , pp. 1083-1092
    • Allendorf, F.W.1    Danzmann, R.G.2
  • 2
    • 0002590589 scopus 로고
    • Tetraploidy and the evolution of salmonid fishes
    • (ed. B.J. Turner), Plenum Press, New York
    • Allendorf, F.W. and Thorgaard, G.H. 1984. Tetraploidy and the evolution of salmonid fishes. In Evolutionary genetics of fishes (ed. B.J. Turner), pp. 1-53. Plenum Press, New York.
    • (1984) Evolutionary Genetics of Fishes , pp. 1-53
    • Allendorf, F.W.1    Thorgaard, G.H.2
  • 5
    • 0003956201 scopus 로고    scopus 로고
    • The new statistical analysis of data
    • Springer-Verlag, New York
    • Anderson, T.W. and Finn, J.D. 1996. The new statistical analysis of data. Springer-Verlag, New York.
    • (1996)
    • Anderson, T.W.1    Finn, J.D.2
  • 6
    • 0012643514 scopus 로고
    • Gene duplication in tetraploid fish: Model for gene silencing at unlinked duplicated loci
    • Bailey, G.S., PouRer, R.T., and Stockwell, P.A. 1978. Gene duplication in tetraploid fish: Model for gene silencing at unlinked duplicated loci. Proc. Natl. Acad. Sci. 75: 5575-5579.
    • (1978) Proc. Natl. Acad. Sci. , vol.75 , pp. 5575-5579
    • Bailey, G.S.1    PouRer, R.T.2    Stockwell, P.A.3
  • 9
    • 0345051044 scopus 로고    scopus 로고
    • Normalization and subtraction: Two approaches to facilitate gene discovery
    • Bonaldo, M.F., Lennon, G., and Soares, M.B. 1996. Normalization and subtraction: Two approaches to facilitate gene discovery. Genome Res. 6: 791-806.
    • (1996) Genome Res. , vol.6 , pp. 791-806
    • Bonaldo, M.F.1    Lennon, G.2    Soares, M.B.3
  • 10
    • 0000608416 scopus 로고
    • Cytotaxonomic studies of the coregonine fishes of the Great Lakes, USA: DNA and karyotype analysis
    • Booke, H.E. 1968. Cytotaxonomic studies of the coregonine fishes of the Great Lakes, USA: DNA and karyotype analysis. J. Fish. Res. Board Can. 25: 1667-1687.
    • (1968) J. Fish. Res. Board Can. , vol.25 , pp. 1667-1687
    • Booke, H.E.1
  • 12
    • 0023019624 scopus 로고
    • Aristotle revisited: The function of pyloric caeca in fish
    • Buddington, R.K. and Diamond, J.M. 1986. Aristotle revisited: The function of pyloric caeca in fish. Proc. Natl. Acad. Sci. 83: 8012-8014.
    • (1986) Proc. Natl. Acad. Sci. , vol.83 , pp. 8012-8014
    • Buddington, R.K.1    Diamond, J.M.2
  • 13
    • 0038670740 scopus 로고    scopus 로고
    • Selenoprotein metabolism and function: Evidence for more than one function for selenoprotein P
    • Burk, R.F., Hill, K.E., and Motley, A.K. 2003. Selenoprotein metabolism and function: Evidence for more than one function for selenoprotein P. J. Nutr. 133: 1517S-1520S.
    • (2003) J. Nutr. , vol.133
    • Burk, R.F.1    Hill, K.E.2    Motley, A.K.3
  • 14
    • 0028802643 scopus 로고
    • Characterization of the Pacific salmon gonadotropin-releasing hormone gene, copy number, and transcription start site
    • Coe, I.R., von Schalburg, K.R., and Sherwood, N.M. 1995. Characterization of the Pacific salmon gonadotropin-releasing hormone gene, copy number, and transcription start site. Mol. Cell. Endocrinol. 115: 113-122.
    • (1995) Mol. Cell. Endocrinol. , vol.115 , pp. 113-122
    • Coe, I.R.1    von Schalburg, K.R.2    Sherwood, N.M.3
  • 15
    • 0036890399 scopus 로고    scopus 로고
    • The cytochrome p450 superfamily: Biochemistry, evolution and drug metabolism in humans
    • Danielson, P.B. 2002. The cytochrome p450 superfamily: Biochemistry, evolution and drug metabolism in humans. Curr. Drug Metab. 3: 561-597.
    • (2002) Curr. Drug Metab. , vol.3 , pp. 561-597
    • Danielson, P.B.1
  • 16
    • 0035941480 scopus 로고    scopus 로고
    • A survey of genes in the Atlantic salmon (Salmo salar) as identified by expressed sequence tags
    • Davey, G.C., Caplice, N.C., Martin, S.A., and Powell, R. 2001. A survey of genes in the Atlantic salmon (Salmo salar) as identified by expressed sequence tags. Gene 263: 121-130.
    • (2001) Gene , vol.263 , pp. 121-130
    • Davey, G.C.1    Caplice, N.C.2    Martin, S.A.3    Powell, R.4
  • 17
    • 0036358539 scopus 로고    scopus 로고
    • Redox control of the transsulfuration and glutathione biosynthesis pathways
    • Deplancke, B. and Gaskins, H.R. 2002. Redox control of the transsulfuration and glutathione biosynthesis pathways. Curr. Opin. Clin. Nutr. Metab. Care 5: 85-92.
    • (2002) Curr. Opin. Clin. Nutr. Metab. Care , vol.5 , pp. 85-92
    • Deplancke, B.1    Gaskins, H.R.2
  • 18
    • 0001167508 scopus 로고
    • Sequence of sockeye salmon type 1 and type 2 growth hormone genes and the relationship of rainbow trout with Atlantic and Pacific salmon
    • Devlin, R.H. 1993. Sequence of sockeye salmon type 1 and type 2 growth hormone genes and the relationship of rainbow trout with Atlantic and Pacific salmon. Can. J. Fish. Aquat. Sci. 50: 1738-1748.
    • (1993) Can. J. Fish. Aquat. Sci. , vol.50 , pp. 1738-1748
    • Devlin, R.H.1
  • 20
    • 0032459999 scopus 로고    scopus 로고
    • Isolation of cDNAs for trypsinogen from the winter flounder. Pleuronectes americanus
    • Douglas, S.E. and Gallant, J,W. 1998. Isolation of cDNAs for trypsinogen from the winter flounder. Pleuronectes americanus. J. Mar. Biotechnol. 6; 214-219.
    • (1998) J. Mar. Biotechnol. , vol.6 , pp. 214-219
    • Douglas, S.E.1    Gallant, J.W.2
  • 21
    • 0001994052 scopus 로고    scopus 로고
    • Molecular investigation of aminopeptidase N expression in the winter flounder. Pleuronectes americanus
    • Douglas, S.E., Bullerwell, C.E., and Gallant, J.W. 1999a. Molecular investigation of aminopeptidase N expression in the winter flounder. Pleuronectes americanus. J. Appl. Ichthyol. 15: 80-86.
    • (1999) J. Appl. Ichthyol. , vol.15 , pp. 80-86
    • Douglas, S.E.1    Bullerwell, C.E.2    Gallant, J.W.3
  • 22
    • 0033195096 scopus 로고    scopus 로고
    • Winter flounder expressed sequence tags: Establishment of an EST database and identification of novel fish genes
    • Douglas, S.E., Gallant, J.W., Bullerwell, C.E., Wolff, C., Munholland, J., and Reith, M.E. 1999b. Winter flounder expressed sequence tags: Establishment of an EST database and identification of novel fish genes. Mar. Biotechnol. 1: 458-464.
    • (1999) Mar. Biotechnol. , vol.1 , pp. 458-464
    • Douglas, S.E.1    Gallant, J.W.2    Bullerwell, C.E.3    Wolff, C.4    Munholland, J.5    Reith, M.E.6
  • 23
    • 0035521294 scopus 로고    scopus 로고
    • The FX enzyme is a functional component of lymphocyte activation
    • Eshel, R., Besser, M., Zanin, A., Sagi-Assif, O., and Witz, I.P. 2001. The FX enzyme is a functional component of lymphocyte activation. Cell. Immunol. 213: 141-148.
    • (2001) Cell. Immunol. , vol.213 , pp. 141-148
    • Eshel, R.1    Besser, M.2    Zanin, A.3    Sagi-Assif, O.4    Witz, I.P.5
  • 24
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using PHRED, II: Error probabilities
    • Ewing, B. and Green, P. 1998. Base-calling of automated sequencer traces using PHRED, II: Error probabilities. Genome Res. 8: 186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 25
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using PHRED, I: Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M.C., and Green, P. 1998. Base-calling of automated sequencer traces using PHRED, I: Accuracy assessment. Genome Res. 8: 175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 26
    • 0037119837 scopus 로고    scopus 로고
    • Mitotic activation of proliferative cells in the inner nuclear layer of the mature fish retina: Regulatory signals and molecular markers
    • Faillace, M.P., Julian, D., and Korenbrot, J.I. 2002. Mitotic activation of proliferative cells in the inner nuclear layer of the mature fish retina: Regulatory signals and molecular markers. J. Comp. Neurol. 451: 127-141.
    • (2002) J. Comp. Neurol. , vol.451 , pp. 127-141
    • Faillace, M.P.1    Julian, D.2    Korenbrot, J.I.3
  • 27
    • 0003535927 scopus 로고    scopus 로고
    • Animal genome size database
    • Gregory, T.R. 2002. Animal genome size database. http://www.genomesize.com.
    • (2002)
    • Gregory, T.R.1
  • 29
    • 0036838108 scopus 로고    scopus 로고
    • Effect of xenoestrogen exposure on the expression of cytochrome P450 isoforms in rainbow trout liver
    • Katchamart, S., Miranda, C.L., Henderson, M.C., Pereira, C.B., and Buhler, D.R. 2002. Effect of xenoestrogen exposure on the expression of cytochrome P450 isoforms in rainbow trout liver. Environ. Toxicol. Chem. 11: 2445-2451.
    • (2002) Environ. Toxicol. Chem. , vol.11 , pp. 2445-2451
    • Katchamart, S.1    Miranda, C.L.2    Henderson, M.C.3    Pereira, C.B.4    Buhler, D.R.5
  • 30
    • 0026088772 scopus 로고
    • Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution
    • Kido, Y., Aono, M., Yamaki, T., Matsumoto, K., Murata, S., Saneyoshi, M., and Okada, N. 1991. Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution. Proc. Natl. Acad. Sci. 88: 2326-2330.
    • (1991) Proc. Natl. Acad. Sci. , vol.88 , pp. 2326-2330
    • Kido, Y.1    Aono, M.2    Yamaki, T.3    Matsumoto, K.4    Murata, S.5    Saneyoshi, M.6    Okada, N.7
  • 32
    • 0036771711 scopus 로고    scopus 로고
    • Two messenger RNA isoforms of the gonadotrophin-releasing hormone receptor, generated by alternative splicing and/or promoter usage, are differentially expressed in rainbow trout gonads during gametogenesis
    • Madigou, T., Uzbekova, S., Lareyre, J.J., and Kah, O. 2002. Two messenger RNA isoforms of the gonadotrophin-releasing hormone receptor, generated by alternative splicing and/or promoter usage, are differentially expressed in rainbow trout gonads during gametogenesis. Mol. Reprod. Dev. 63: 151-160.
    • (2002) Mol. Reprod. Dev. , vol.63 , pp. 151-160
    • Madigou, T.1    Uzbekova, S.2    Lareyre, J.J.3    Kah, O.4
  • 33
    • 0003728605 scopus 로고
    • 3rd ed. John Wiley & Sons, New York
    • Nelson, J.S. 1994. Fishes of the world, 3rd ed. John Wiley & Sons, New York.
    • (1994) Fishes of the World
    • Nelson, J.S.1
  • 34
    • 0003515251 scopus 로고
    • Evolution by gene duplication
    • Springer-Verlang, Heidelberg, Germany
    • Ohno, 5. 1970. Evolution by gene duplication. Springer-Verlang, Heidelberg, Germany.
    • (1970)
    • Ohno, S.1
  • 35
    • 78651190780 scopus 로고
    • Post-zygotic chromosomal rearrangements in rainbow trout (Salmo irideus GIBBONS)
    • Ohno, S., Stenius, C., Faisst, E., and Zenzes, M.T. 1965. Post-zygotic chromosomal rearrangements in rainbow trout (Salmo irideus GIBBONS) Cytogenetics 4: 117-129.
    • (1965) Cytogenetics , vol.4 , pp. 117-129
    • Ohno, S.1    Stenius, C.2    Faisst, E.3    Zenzes, M.T.4
  • 36
    • 0014237181 scopus 로고
    • Evolution from fish to mammals by gene duplication
    • Ohno, S., Wolf, U., and Atkin, N.B. 1968. Evolution from fish to mammals by gene duplication. Hereditas 59: 169-187.
    • (1968) Hereditas , vol.59 , pp. 169-187
    • Ohno, S.1    Wolf, U.2    Atkin, N.B.3
  • 37
    • 0032486278 scopus 로고    scopus 로고
    • Molecular cloning and expression of GDP-D-mannose-4,6-dehydratase, a key enzyme for fucose metabolism defective in Lec13 cells
    • Ohyama, C., Smith, P.L., Angata, K., Fukuda, M.N., Lowe, J.B., and Fukuda, M. 1998. Molecular cloning and expression of GDP-D-mannose-4,6-dehydratase, a key enzyme for fucose metabolism defective in Lec13 cells. J. Biol. Chem. 273: 14582-14587.
    • (1998) J. Biol. Chem. , vol.273 , pp. 14582-14587
    • Ohyama, C.1    Smith, P.L.2    Angata, K.3    Fukuda, M.N.4    Lowe, J.B.5    Fukuda, M.6
  • 38
    • 0003113635 scopus 로고    scopus 로고
    • Phylogenetic relationships among the Salmoninae based on nuclear and mitochondrial DNA sequences
    • (eds. T.D. Kocher and C.A. Stepien), Academic Press, San Diego, CA
    • Phillips, R.B. and Oakley, T.H. 1997. Phylogenetic relationships among the Salmoninae based on nuclear and mitochondrial DNA sequences. In Molecular systematics of fishes (eds. T.D. Kocher and C.A. Stepien), pp. 145-162. Academic Press, San Diego, CA.
    • (1997) Molecular Systematics of Fishes , pp. 145-162
    • Phillips, R.B.1    Oakley, T.H.2
  • 39
    • 0035096956 scopus 로고    scopus 로고
    • Chromosome evolution in the Salmonidae (Pisces): An update
    • Phillips, R. and Ráb, P. 2001. Chromosome evolution in the Salmonidae (Pisces): An update. Biol. Rev. 76: 1-25.
    • (2001) Biol. Rev. , vol.76 , pp. 1-25
    • Phillips, R.1    Ráb, P.2
  • 40
    • 0037136408 scopus 로고    scopus 로고
    • Role of galectins in inflammatory and immunomodulatory processes
    • Rabinovich, G.A., Rubinstein, N., and Toscano, M.A. 2002. Role of galectins in inflammatory and immunomodulatory processes. Biochim. Biophys. Acta 1572: 274-284.
    • (2002) Biochim. Biophys. Acta , vol.1572 , pp. 274-284
    • Rabinovich, G.A.1    Rubinstein, N.2    Toscano, M.A.3
  • 41
    • 0037337666 scopus 로고    scopus 로고
    • Gene disruption discloses role of selenoprotein P in selenium delivery to target tissues
    • Schomburg, L., Schweizer, U., Holtmann, B., Flohe, L., Sendtner, M., and Kohrle, J. 2003. Gene disruption discloses role of selenoprotein P in selenium delivery to target tissues. Biochem. J. 370: 397-402.
    • (2003) Biochem. J. , vol.370 , pp. 397-402
    • Schomburg, L.1    Schweizer, U.2    Holtmann, B.3    Flohe, L.4    Sendtner, M.5    Kohrle, J.6
  • 43
    • 0030473920 scopus 로고    scopus 로고
    • Gen(om)e duplications in the evolution of early vertebrates
    • Sidow, A. 1996. Gen(om)e duplications in the evolution of early vertebrates. Curr. Opin. Genet. Dev. 6: 715-722.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 715-722
    • Sidow, A.1
  • 44
    • 0002357683 scopus 로고
    • The classification and scientific names of rainbow and cutthroat trouts
    • Smith, G.R. and Stearley, R.F. 1989. The classification and scientific names of rainbow and cutthroat trouts. Fisheries 14:4-10.
    • (1989) Fisheries , vol.14 , pp. 4-10
    • Smith, G.R.1    Stearley, R.F.2
  • 46
    • 0001853465 scopus 로고
    • Historical ecology of the Salmoninae, with special reference to Oncorhynchus
    • (ed. R.L. Mayden), Stanford University Press, Stanford, CA
    • Stearley, R.F. 1992. Historical ecology of the Salmoninae, with special reference to Oncorhynchus. In Systematic historical ecology and North American freshwater fishes (ed. R.L. Mayden), pp. 622-658. Stanford University Press, Stanford, CA.
    • (1992) Systematic Historical Ecology and North American Freshwater Fishes , pp. 622-658
    • Stearley, R.F.1
  • 48
    • 0031914878 scopus 로고    scopus 로고
    • Genome size and GC-percent in vertebrates as determined by flow cytometry: The triangular relationship
    • Vinogradov, A.E. 1998. Genome size and GC-percent in vertebrates as determined by flow cytometry: The triangular relationship. Cytometry 31: 100-109.
    • (1998) Cytometry , vol.31 , pp. 100-109
    • Vinogradov, A.E.1
  • 49
    • 0035344021 scopus 로고    scopus 로고
    • Yesterday's polyploids and the mystery of diploidization
    • Wolfe, K.H. 2001. Yesterday's polyploids and the mystery of diploidization. Nat. Rev. Genet. 2: 333-341.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 333-341
    • Wolfe, K.H.1
  • 50
    • 0035097414 scopus 로고    scopus 로고
    • Biochemical and physiological evidence that bile acids produced and released by lake char (Salvelinus namaycush) function as chemical signals
    • Zhang, C., Brown, S.B., and Hara, T.J. 2001. Biochemical and physiological evidence that bile acids produced and released by lake char (Salvelinus namaycush) function as chemical signals. J. Comp. Physiol. B 171: 161-171.
    • (2001) J. Comp. Physiol. B , vol.171 , pp. 161-171
    • Zhang, C.1    Brown, S.B.2    Hara, T.J.3


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