-
1
-
-
0242669214
-
A giant virus in amoebae
-
La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie JM, Raoult D: A giant virus in amoebae. Science 2003; 299: 2033.
-
(2003)
Science
, vol.299
, pp. 2033
-
-
La Scola, B.1
Audic, S.2
Robert, C.3
Jungang, L.4
De Lamballerie, X.5
Drancourt, M.6
Birtles, R.7
Claverie, J.M.8
Raoult, D.9
-
2
-
-
8844266097
-
The 1.2-megabase genome sequence of Mimivirus
-
Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM: The 1.2-megabase genome sequence of Mimivirus. Science 2004; 306: 1344-1350.
-
(2004)
Science
, vol.306
, pp. 1344-1350
-
-
Raoult, D.1
Audic, S.2
Robert, C.3
Abergel, C.4
Renesto, P.5
Ogata, H.6
La Scola, B.7
Suzan, M.8
Claverie, J.M.9
-
3
-
-
51349125147
-
The virophage as a unique parasite of the giant Mimivirus
-
La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan- Monti M, Forterre P, Koonin E, Raoult D: The virophage as a unique parasite of the giant Mimivirus. Nature 2008; 455: 100-104.
-
(2008)
Nature
, vol.455
, pp. 100-104
-
-
La Scola, B.1
Desnues, C.2
Pagnier, I.3
Robert, C.4
Barrassi, L.5
Fournous, G.6
Merchat, M.7
Suzan- Monti, M.8
Forterre, P.9
Koonin, E.10
Raoult, D.11
-
4
-
-
77953695716
-
Tentative characterization of new environmental giant viruses by MALDI-TOF mass spectrometry
-
La Scola B, Campocasso A, NDong R, Fournous G, Barrassi L, Flaudrops C, Raoult D: Tentative characterization of new environmental giant viruses by MALDI-TOF mass spectrometry. Intervirology 2010; 53: 344-353.
-
(2010)
Intervirology
, vol.53
, pp. 344-353
-
-
La Scola, B.1
Campocasso, A.2
Ndong, R.3
Fournous, G.4
Barrassi, L.5
Flaudrops, C.6
Raoult, D.7
-
5
-
-
80054814749
-
Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
-
Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM: Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci USA 2011; 108: 17486-17491.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 17486-17491
-
-
Arslan, D.1
Legendre, M.2
Seltzer, V.3
Abergel, C.4
Claverie, J.M.5
-
6
-
-
84876156192
-
Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the Megavirus lineage
-
Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin EV: Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the Megavirus lineage. Genome Biol Evol 2012; 4: 1324-1330.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 1324-1330
-
-
Yoosuf, N.1
Yutin, N.2
Colson, P.3
Shabalina, S.A.4
Pagnier, I.5
Robert, C.6
Azza, S.7
Klose, T.8
Wong, J.9
Rossmann, M.G.10
La Scola, B.11
Raoult, D.12
Koonin, E.V.13
-
7
-
-
78650627880
-
Giant virus with a remarkable complement of genes infects marine zooplankton
-
Fischer MG, Allen MJ, Wilson WH, Suttle CA: Giant virus with a remarkable complement of genes infects marine zooplankton. Proc Natl Acad Sci USA 2010; 107: 19508-19513.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19508-19513
-
-
Fischer, M.G.1
Allen, M.J.2
Wilson, W.H.3
Suttle, C.A.4
-
8
-
-
79955747671
-
The giant Cafeteria roenbergensis virus that infects a widespread marine phagocytic protist is a new member of the fourth domain of Life
-
Colson P, Gimenez G, Boyer M, Fournous G, Raoult D: The giant Cafeteria roenbergensis virus that infects a widespread marine phagocytic protist is a new member of the fourth domain of Life. PLoS One 2011; 6:e18935.
-
(2011)
PLoS One
, vol.6
-
-
Colson, P.1
Gimenez, G.2
Boyer, M.3
Fournous, G.4
Raoult, D.5
-
9
-
-
84861459625
-
Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales
-
Colson P, de Lambellerie X, Fournous G, Raoult D: Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales. Intervirology 2012; 55: 321-332.
-
(2012)
Intervirology
, vol.55
, pp. 321-332
-
-
Colson, P.1
De Lambellerie, X.2
Fournous, G.3
Raoult, D.4
-
10
-
-
84875689946
-
Mimiviridae: Clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family
-
Yutin N, Colson P, Raoult D, Koonin EV: Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family. Virol J 2013; 10: 106.
-
(2013)
Virol J
, vol.10
, pp. 106
-
-
Yutin, N.1
Colson, P.2
Raoult, D.3
Koonin, E.V.4
-
11
-
-
74549151848
-
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms
-
Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, La Scola B, Koonin EV, Raoult D: Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci USA 2009; 106: 21848-21853.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21848-21853
-
-
Boyer, M.1
Yutin, N.2
Pagnier, I.3
Barrassi, L.4
Fournous, G.5
Espinosa, L.6
Robert, C.7
Azza, S.8
Sun, S.9
Rossmann, M.G.10
Suzan-Monti, M.11
La Scola, B.12
Koonin, E.V.13
Raoult, D.14
-
12
-
-
79958019645
-
Lausannevirus, a giant amoebal virus encoding histone doublets
-
Thomas V, Bertelli C, Collyn F, Casson N, Telenti A, Goesmann A, Croxatto A, Greub G: Lausannevirus, a giant amoebal virus encoding histone doublets. Environ Microbiol 2011; 13: 1454-1466.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1454-1466
-
-
Thomas, V.1
Bertelli, C.2
Collyn, F.3
Casson, N.4
Telenti, A.5
Goesmann, A.6
Croxatto, A.7
Greub, G.8
-
13
-
-
84876029838
-
Marseilleviridae, a new family of giant viruses infecting amoebae
-
Colson P, Pagnier I, Yoosuf N, Fournous G, La Scola B, Raoult D: Marseilleviridae, a new family of giant viruses infecting amoebae. Arch Virol 2013; 158: 915-920.
-
(2013)
Arch Virol
, vol.158
, pp. 915-920
-
-
Colson, P.1
Pagnier, I.2
Yoosuf, N.3
Fournous, G.4
La Scola, B.5
Raoult, D.6
-
15
-
-
79959907143
-
Ameba-associated keratitis
-
Cohen G, Hoffart L, La Scola B, Raoult D, Drancourt M: Ameba-associated Keratitis, France. Emerg Infect Dis 2011; 17: 1306-1308.
-
(2011)
France. Emerg Infect Dis
, vol.17
, pp. 1306-1308
-
-
Cohen, G.1
Hoffart, L.2
La Scola, B.3
Raoult, D.4
Drancourt, M.5
-
16
-
-
84880934902
-
-
Saadi H, Pagnier I, Colson P, Kanoun Cherif J, Beji M, Boughalmi M, Azza S, Armstrong N, Robert C, Fournous G, La Scola B, Raoult D: First isolation of Mimivirus in a patient with pneumonia; 2013; 57:e127-e134.
-
(2013)
First Isolation of Mimivirus in A Patient with Pneumonia
, vol.57
-
-
Saadi, H.1
Pagnier, I.2
Colson, P.3
Kanoun Cherif, J.4
Beji, M.5
Boughalmi, M.6
Azza, S.7
Armstrong, N.8
Robert, C.9
Fournous, G.10
La Scola, B.11
Raoult, D.12
-
17
-
-
84888824200
-
Evidence of the megavirome in humans
-
Colson P, Fancello L, Gimenez G, Armougom F, Desnues C, Fournous G, Yoosuf N, Million M, La Scola B, Raoult D: Evidence of the megavirome in humans. J Clin Virol 2013; 57: 191-200.
-
(2013)
J Clin Virol
, vol.57
, pp. 191-200
-
-
Colson, P.1
Fancello, L.2
Gimenez, G.3
Armougom, F.4
Desnues, C.5
Fournous, G.6
Yoosuf, N.7
Million, M.8
La Scola, B.9
Raoult, D.10
-
18
-
-
84887031979
-
Giant Blood Marseillevirus recovered from asymptomatic blood donors
-
E-pub ahead of print
-
Popgeorgiev N, Boyer M, Fancello L, Monteil S, Robert C, Rivet R, Nappez C, Azza S, Chiaroni J, Raoult D, Desnues C: Giant Blood Marseillevirus recovered from asymptomatic blood donors. J Infect Dis 2013, E-pub ahead of print.
-
(2013)
J Infect Dis
-
-
Popgeorgiev, N.1
Boyer, M.2
Fancello, L.3
Monteil, S.4
Robert, C.5
Rivet, R.6
Nappez, C.7
Azza, S.8
Chiaroni, J.9
Raoult, D.10
Desnues, C.11
-
19
-
-
84887070411
-
Giant viruses of amoebae as potential human pathogens
-
Colson P, La Scola B, Raoult D: Giant viruses of amoebae as potential human pathogens. Intervirology 2013; 56: 376-385.
-
(2013)
Intervirology
, vol.56
, pp. 376-385
-
-
Colson, P.1
La Scola, B.2
Raoult, D.3
-
20
-
-
0028174894
-
Trojan horses of the microbial world: Protozoa and the survival of bacterial pathogens in the environment
-
Barker J, Brown MR: Trojan horses of the microbial world: protozoa and the survival of bacterial pathogens in the environment. Microbiology 1994; 140: 1253-1259.
-
(1994)
Microbiology
, vol.140
, pp. 1253-1259
-
-
Barker, J.1
Brown, M.R.2
-
21
-
-
0028067210
-
Ecology of free-living amoebae
-
Rodriguez-Zaragoza S: Ecology of free-living amoebae. Crit Rev Microbiol 1994; 20: 225-241.
-
(1994)
Crit Rev Microbiol
, vol.20
, pp. 225-241
-
-
Rodriguez-Zaragoza, S.1
-
22
-
-
2042522697
-
Microorganisms resistant to free-living amoebae
-
Greub G, Raoult D: Microorganisms resistant to free-living amoebae. Clin Microbiol Rev 2004; 17: 413-433.
-
(2004)
Clin Microbiol Rev
, vol.17
, pp. 413-433
-
-
Greub, G.1
Raoult, D.2
-
23
-
-
77953708302
-
Amoebae as genitors and reservoirs of giant viruses
-
Raoult D, Boyer M: Amoebae as genitors and reservoirs of giant viruses. Intervirology 2010; 53: 321-329.
-
(2010)
Intervirology
, vol.53
, pp. 321-329
-
-
Raoult, D.1
Boyer, M.2
-
24
-
-
0033046220
-
Mechanisms of phagocytosis in macrophages
-
Aderem A, Underhill DM: Mechanisms of phagocytosis in macrophages. Annu Rev Immunol 1999; 17: 593-623.
-
(1999)
Annu Rev Immunol
, vol.17
, pp. 593-623
-
-
Aderem, A.1
Underhill, D.M.2
-
25
-
-
84879996480
-
Lateral gene exchanges shape the genomes of amoeba-resisting microorganisms
-
Bertelli C, Greub G: Lateral gene exchanges shape the genomes of amoeba-resisting microorganisms. Front Cell Infect Microbiol 2012; 2: 110.
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 110
-
-
Bertelli, C.1
Greub, G.2
-
26
-
-
77950421915
-
Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution
-
Moliner C, Fournier PE, Raoult D: Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution. FEMS Microbiol Rev 2010; 34: 281-294.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 281-294
-
-
Moliner, C.1
Fournier, P.E.2
Raoult, D.3
-
27
-
-
0035167322
-
Common origin of four diverse families of large eukaryotic DNA viruses
-
Iyer LM, Aravind L, Koonin EV: Common origin of four diverse families of large eukaryotic DNA viruses. J Virol 2001; 75: 11720-11734.
-
(2001)
J Virol
, vol.75
, pp. 11720-11734
-
-
Iyer, L.M.1
Aravind, L.2
Koonin, E.V.3
-
28
-
-
33645076499
-
Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
-
Iyer LM, Balaji S, Koonin EV, Aravind L: Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res 2006; 117: 156-184.
-
(2006)
Virus Res
, vol.117
, pp. 156-184
-
-
Iyer, L.M.1
Balaji, S.2
Koonin, E.V.3
Aravind, L.4
-
29
-
-
84864950902
-
Hidden evolutionary complexity of nucleo-cytoplasmic large DNA viruses of eukaryotes
-
Yutin N, Koonin EV: Hidden evolutionary complexity of nucleo-cytoplasmic large DNA viruses of eukaryotes. Virol J 2012; 9: 161.
-
(2012)
Virol J
, vol.9
, pp. 161
-
-
Yutin, N.1
Koonin, E.V.2
-
30
-
-
78649934045
-
Phylogenetic and phyletic studies of informational genes in genomes highlight existence of a 4th domain of life including giant viruses
-
Boyer M, Madoui MA, Gimenez G, La Scola B, Raoult D: Phylogenetic and phyletic studies of informational genes in genomes highlight existence of a 4th domain of life including giant viruses. PLoS One 2010; 5:e15530.
-
(2010)
PLoS One
, vol.5
-
-
Boyer, M.1
Madoui, M.A.2
Gimenez, G.3
La Scola, B.4
Raoult, D.5
-
31
-
-
79959201884
-
Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses
-
Williams TA, Embley TM, Heinz E: Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses. PLoS One 2011; 6:e21080.
-
(2011)
PLoS One
, vol.6
-
-
Williams, T.A.1
Embley, T.M.2
Heinz, E.3
-
32
-
-
84865305042
-
Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea
-
Nasir A, Kim KM, Caetano-Anolles G: Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya. BMC Evol Biol 2012; 12: 156.
-
(2012)
Bacteria and Eukarya. BMC Evol Biol
, vol.12
, pp. 156
-
-
Nasir, A.1
Kim, K.M.2
Caetano-Anolles, G.3
-
35
-
-
58149189877
-
GtRNAdb: A database of transfer RNA genes detected in genomic sequence
-
Chan PP, Lowe TM: GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 2009; 37:D93-D97.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Chan, P.P.1
Lowe, T.M.2
-
36
-
-
50949084622
-
Evolutionary patterns in the sequence and structure of transfer RNA: A window into early translation and the genetic code
-
Sun FJ, Caetano-Anolles G: Evolutionary patterns in the sequence and structure of transfer RNA: a window into early translation and the genetic code. PLoS One 2008; 3:e2799.
-
(2008)
PLoS One
, vol.3
-
-
Sun, F.J.1
Caetano-Anolles, G.2
-
37
-
-
34247565541
-
Distinctive features of large complex virus genomes and proteomes
-
Mrazek J, Karlin S: Distinctive features of large complex virus genomes and proteomes. Proc Natl Acad Sci USA 2007; 104: 5127-5132.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 5127-5132
-
-
Mrazek, J.1
Karlin, S.2
-
38
-
-
78650304100
-
Synonymous but not the same: The causes and consequences of codon bias
-
Plotkin JB, Kudla G: Synonymous but not the same: the causes and consequences of codon bias. Nat Rev Genet 2011; 12: 32-42.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 32-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
39
-
-
33745880427
-
Factors influencing synonymous codon and amino acid usage biases in Mimivirus
-
Sau K, Gupta SK, Sau S, Mandal SC, Ghosh TC: Factors influencing synonymous codon and amino acid usage biases in Mimivirus. Biosystems 2006; 85: 107-113.
-
(2006)
Biosystems
, vol.85
, pp. 107-113
-
-
Sau, K.1
Gupta, S.K.2
Sau, S.3
Mandal, S.C.4
Ghosh, T.C.5
-
40
-
-
77951857386
-
Mrna deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus
-
Legendre M, Audic S, Poirot O, Hingamp P, Seltzer V, Byrne D, Lartigue A, Lescot M, Bernadac A, Poulain J, Abergel C, Claverie JM: mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus. Genome Res 2010; 20: 664-674.
-
(2010)
Genome Res
, vol.20
, pp. 664-674
-
-
Legendre, M.1
Audic, S.2
Poirot, O.3
Hingamp, P.4
Seltzer, V.5
Byrne, D.6
Lartigue, A.7
Lescot, M.8
Bernadac, A.9
Poulain, J.10
Abergel, C.11
Claverie, J.M.12
-
41
-
-
84876156192
-
Related giant viruses in distant locations and different habitats Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the Megavirus lineage
-
Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin EV: Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the Megavirus lineage. Genome Biol Evol 2012; 4: 1324-1330.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 1324-1330
-
-
Yoosuf, N.1
Yutin, N.2
Colson, P.3
Shabalina, S.A.4
Pagnier, I.5
Robert, C.6
Azza, S.7
Klose, T.8
Wong, J.9
Rossmann, M.G.10
La Scola, B.11
Raoult, D.12
Koonin, E.V.13
-
42
-
-
84868146121
-
Provirophages and transpovirons as the diverse mobilome of giant viruses
-
Desnues C, La Scola B, Yutin N, Fournous G, Robert C, Azza S, Jardot P, Monteil S, Campocasso A, Koonin EV, Raoult D: Provirophages and transpovirons as the diverse mobilome of giant viruses. Proc Natl Acad Sci USA 2012; 109: 18078-18083.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 18078-18083
-
-
Desnues, C.1
La Scola, B.2
Yutin, N.3
Fournous, G.4
Robert, C.5
Azza, S.6
Jardot, P.7
Monteil, S.8
Campocasso, A.9
Koonin, E.V.10
Raoult, D.11
-
43
-
-
79955006806
-
Virophage control of antarctic algal host-virus dynamics
-
Yau S, Lauro FM, DeMaere MZ, Brown MV, Thomas T, Raftery MJ, Andrews-Pfannkoch C, Lewis M, Hoffman JM, Gibson JA, Cavicchioli R: Virophage control of antarctic algal host-virus dynamics. Proc Natl Acad Sci USA 2011; 108: 6163-6168.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 6163-6168
-
-
Yau, S.1
Lauro, F.M.2
Demaere, M.Z.3
Brown, M.V.4
Thomas, T.5
Raftery, M.J.6
Andrews-Pfannkoch, C.7
Lewis, M.8
Hoffman, J.M.9
Gibson, J.A.10
Cavicchioli, R.11
-
44
-
-
2942525125
-
Isolation and phylogenetic analysis of novel viruses infecting the phytoplankton Phaeocystis globosa (Prymnesiophyceae)
-
Brussaard CP, Short SM, Frederickson CM, Suttle CA: Isolation and phylogenetic analysis of novel viruses infecting the phytoplankton Phaeocystis globosa (Prymnesiophyceae). Appl Environ Microbiol 2004; 70: 3700-3705.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3700-3705
-
-
Brussaard, C.P.1
Short, S.M.2
Frederickson, C.M.3
Suttle, C.A.4
-
45
-
-
53149111160
-
CAIcal: A combined set of tools to assess codon usage adaptation
-
Puigbo P, Bravo IG, Garcia-Vallve S: CAIcal: a combined set of tools to assess codon usage adaptation. Biol Direct 2008; 3: 38.
-
(2008)
Biol Direct
, vol.3
, pp. 38
-
-
Puigbo, P.1
Bravo, I.G.2
Garcia-Vallve, S.3
-
46
-
-
0031851853
-
GCUA: General codon usage analysis
-
McInerney JO: GCUA: general codon usage analysis. Bioinformatics 1998; 14: 372-373.
-
(1998)
Bioinformatics
, vol.14
, pp. 372-373
-
-
McInerney, J.O.1
-
47
-
-
39549104948
-
E-CAI: A novel server to estimate an expected value of Codon Adaptation Index (eCAI
-
Puigbo P, Bravo IG, Garcia-Vallve S: E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI). BMC Bioinformatics 2008; 9: 65.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 65
-
-
Puigbo, P.1
Bravo, I.G.2
Garcia-Vallve, S.3
-
48
-
-
0023650543
-
The Codon Adaptation Index - A measure of directional synonymous codon usage bias, and its potential applications
-
Sharp PM, Li WH: The Codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 1987; 15: 1281-1295.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
49
-
-
80051756070
-
Specialization versus adaptation: Two strategies employed by cyanophages to enhance their translation efficiencies
-
Limor-Waisberg K, Carmi A, Scherz A, Pilpel Y, Furman I: Specialization versus adaptation: two strategies employed by cyanophages to enhance their translation efficiencies. Nucleic Acids Res 2011; 39: 6016-6028.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6016-6028
-
-
Limor-Waisberg, K.1
Carmi, A.2
Scherz, A.3
Pilpel, Y.4
Furman, I.5
-
50
-
-
11144241326
-
Correlation of codon bias measures with mRNA levels: Analysis of transcriptome data from Escherichia coli
-
Goetz RM, Fuglsang A: Correlation of codon bias measures with mRNA levels: analysis of transcriptome data from Escherichia coli . Biochem Biophys Res Commun 2005; 327: 4-7.
-
(2005)
Biochem Biophys Res Commun
, vol.327
, pp. 4-7
-
-
Goetz, R.M.1
Fuglsang, A.2
-
51
-
-
77950789959
-
RCDI/ eRCDI: A web-server to estimate codon usage deoptimization
-
Puigbo P, Aragones L, Garcia-Vallve S: RCDI/ eRCDI: a web-server to estimate codon usage deoptimization. BMC Res Notes 2010; 3: 87.
-
(2010)
BMC Res Notes
, vol.3
, pp. 87
-
-
Puigbo, P.1
Aragones, L.2
Garcia-Vallve, S.3
-
52
-
-
33748923860
-
Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity
-
Mueller S, Papamichail D, Coleman JR, Skiena S, Wimmer E: Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity. J Virol 2006; 80: 9687-9696.
-
(2006)
J Virol
, vol.80
, pp. 9687-9696
-
-
Mueller, S.1
Papamichail, D.2
Coleman, J.R.3
Skiena, S.4
Wimmer, E.5
-
53
-
-
23144460836
-
The trnascan-se, snoscan and snogps web servers for the detection of trnas and snornas
-
Schattner P, Brooks AN, Lowe TM: The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res 2005; 33:W686-W689.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Schattner, P.1
Brooks, A.N.2
Lowe, T.M.3
-
54
-
-
1242297827
-
Aragorn, a program to detect trna genes and tmrna genes in nucleotide sequences
-
Laslett D, Canback B: ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res 2004; 32: 11-16.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 11-16
-
-
Laslett, D.1
Canback, B.2
-
55
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997; 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
56
-
-
84873054609
-
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
-
Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Burglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, Paponov I, Finkler A, Soon Heng TC, Hutchins AP, Weinmeier T, Rattei T, Chu JS, Gimenez G, Irimia M, Rigden DJ, Fitzpatrick DA, Lorenzo- Morales J, Bateman A, Chiu CH, Tang P, Hegemann P, Fromm H, Raoult D, Greub G, Miranda-Saavedra D, Chen N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus B: Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biol 2013; 14:R11.
-
(2013)
Genome Biol
, vol.14
-
-
Clarke, M.1
Lohan, A.J.2
Liu, B.3
Lagkouvardos, I.4
Roy, S.5
Zafar, N.6
Bertelli, C.7
Schilde, C.8
Kianianmomeni, A.9
Burglin, T.R.10
Frech, C.11
Turcotte, B.12
Kopec, K.O.13
Synnott, J.M.14
Choo, C.15
Paponov, I.16
Finkler, A.17
Soon Heng, T.C.18
Hutchins, A.P.19
Weinmeier, T.20
Rattei, T.21
Chu, J.S.22
Gimenez, G.23
Irimia, M.24
Rigden, D.J.25
Fitzpatrick, D.A.26
Lorenzo- Morales, J.27
Bateman, A.28
Chiu, C.H.29
Tang, P.30
Hegemann, P.31
Fromm, H.32
Raoult, D.33
Greub, G.34
Miranda-Saavedra, D.35
Chen, N.36
Nash, P.37
Ginger, M.L.38
Horn, M.39
Schaap, P.40
Caler, L.41
Loftus, B.42
more..
-
57
-
-
13244255415
-
Muscle: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC: MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004; 5: 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
58
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J: Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000; 17: 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
59
-
-
79957613599
-
Mega5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011; 28: 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
60
-
-
33751250835
-
Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products
-
Renesto P, Abergel C, Decloquement P, Moinier D, Azza S, Ogata H, Fourquet P, Gorvel JP, Claverie JM: Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. J Virol 2006; 80: 11678-11685.
-
(2006)
J Virol
, vol.80
, pp. 11678-11685
-
-
Renesto, P.1
Abergel, C.2
Decloquement, P.3
Moinier, D.4
Azza, S.5
Ogata, H.6
Fourquet, P.7
Gorvel, J.P.8
Claverie, J.M.9
-
61
-
-
40349112971
-
Giant viruses, giant chimeras: The multiple evolutionary histories of Mimivirus genes
-
Moreira D, Brochier-Armanet C: Giant viruses, giant chimeras: the multiple evolutionary histories of Mimivirus genes. BMC Evol Biol 2008; 8: 12.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 12
-
-
Moreira, D.1
Brochier-Armanet, C.2
-
62
-
-
33845648979
-
I am what i eat and i eat what i am: Acquisition of bacterial genes by giant viruses
-
Filee J, Siguier P, Chandler M: I am what I eat and I eat what I am: acquisition of bacterial genes by giant viruses. Trends Genet 2007; 23: 10-15.
-
(2007)
Trends Genet
, vol.23
, pp. 10-15
-
-
Filee, J.1
Siguier, P.2
Chandler, M.3
-
63
-
-
34948860729
-
Causes for the intriguing presence of tRNAs in phages
-
Bailly-Bechet M, Vergassola M, Rocha E: Causes for the intriguing presence of tRNAs in phages. Genome Res 2007; 17: 1486-1495.
-
(2007)
Genome Res
, vol.17
, pp. 1486-1495
-
-
Bailly-Bechet, M.1
Vergassola, M.2
Rocha, E.3
-
64
-
-
84857123340
-
Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts
-
Enav H, Beja O, Mandel-Gutfreund Y: Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts. ISME J 2012; 6: 619-628.
-
(2012)
ISME J
, vol.6
, pp. 619-628
-
-
Enav, H.1
Beja, O.2
Mandel-Gutfreund, Y.3
-
65
-
-
33645047654
-
Genomic and evolutionary aspects of Mimivirus
-
Suzan-Monti M, La Scola B, Raoult D: Genomic and evolutionary aspects of Mimivirus. Virus Res 2006; 117: 145-155.
-
(2006)
Virus Res
, vol.117
, pp. 145-155
-
-
Suzan-Monti, M.1
La Scola, B.2
Raoult, D.3
|