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Volumn 9, Issue , 2012, Pages

Hidden evolutionary complexity of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE; DNA TOPOISOMERASE; DNA TOPOISOMERASE (ATP HYDROLYSING); DNA TOPOISOMERASE 1B; ENDONUCLEASE; HELICASE; MESSENGER RNA; METHYLTRANSFERASE; NUCLEOTIDYLTRANSFERASE; RECOMBINASE; RNA LIGASE; RNA POLYMERASE; RNA POLYMERASE ALPHA SUBUNIT; RNA POLYMERASE BETA SUBUNIT; UNCLASSIFIED DRUG; VIRUS DNA; VIRUS PROTEIN;

EID: 84864950902     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-9-161     Document Type: Article
Times cited : (124)

References (40)
  • 1
    • 33645053240 scopus 로고    scopus 로고
    • The origin of viruses and their possible roles in major evolutionary transitions
    • The origin of viruses and their possible roles in major evolutionary transitions. Forterre P, Virus Res 2006 117 1 5 16
    • (2006) Virus Res , vol.117 , Issue.1 , pp. 5-16
    • Forterre, P.1
  • 2
    • 33947593126 scopus 로고    scopus 로고
    • The ancient virus world and evolution of cells
    • The ancient virus world and evolution of cells. Koonin EV, Senkevich TG, Dolja VV, Biol Direct 2006 1 1 29
    • (2006) Biol Direct , vol.1 , Issue.1 , pp. 29
    • Koonin, E.V.1    Senkevich, T.G.2    Dolja, V.V.3
  • 3
    • 0035167322 scopus 로고    scopus 로고
    • Common origin of four diverse families of large eukaryotic DNA viruses
    • Common origin of four diverse families of large eukaryotic DNA viruses. Iyer LM, Aravind L, Koonin EV, J Virol 2001 75 23 11720 11734
    • (2001) J Virol , vol.75 , Issue.23 , pp. 11720-11734
    • Iyer, L.M.1    Aravind, L.2    Koonin, E.V.3
  • 4
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Iyer LM, Balaji S, Koonin EV, Aravind L, Virus Res 2006 117 1 156 184
    • (2006) Virus Res , vol.117 , Issue.1 , pp. 156-184
    • Iyer, L.M.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 5
    • 74549198854 scopus 로고    scopus 로고
    • Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution
    • Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution. Yutin N, Wolf YI, Raoult D, Koonin EV, Virol J 2009 6 223
    • (2009) Virol J , vol.6 , pp. 223
    • Yutin, N.1    Wolf, Y.I.2    Raoult, D.3    Koonin, E.V.4
  • 6
    • 77953692396 scopus 로고    scopus 로고
    • Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA viruses
    • Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA viruses. Koonin EV, Yutin N, Intervirology 2010 53 5 284 292
    • (2010) Intervirology , vol.53 , Issue.5 , pp. 284-292
    • Koonin, E.V.1    Yutin, N.2
  • 9
    • 42449154473 scopus 로고    scopus 로고
    • Poxviridae: The viruses and their replication
    • Lippincott Williams & Wilkins, Philadelphia Knipe DM, Howley PM
    • Poxviridae: the viruses and their replication. Moss B, Fields Virology Lippincott Williams & Wilkins, Philadelphia, Knipe DM, Howley PM, 2007 2905 2946
    • (2007) Fields Virology , pp. 2905-2946
    • Moss, B.1
  • 11
    • 77953708302 scopus 로고    scopus 로고
    • Amoebae as genitors and reservoirs of giant viruses
    • Amoebae as genitors and reservoirs of giant viruses. Raoult D, Boyer M, Intervirology 2010 53 5 321 329
    • (2010) Intervirology , vol.53 , Issue.5 , pp. 321-329
    • Raoult, D.1    Boyer, M.2
  • 12
    • 77953710766 scopus 로고    scopus 로고
    • Gene repertoire of amoeba-associated giant viruses
    • Gene repertoire of amoeba-associated giant viruses. Colson P, Raoult D, Intervirology 2010 53 5 330 343
    • (2010) Intervirology , vol.53 , Issue.5 , pp. 330-343
    • Colson, P.1    Raoult, D.2
  • 15
    • 80054809678 scopus 로고    scopus 로고
    • Viruses with more than 1,000 genes: Mamavirus, a new Acanthamoeba polyphaga mimivirus strain, and reannotation of Mimivirus genes
    • Viruses with more than 1,000 genes: Mamavirus, a new Acanthamoeba polyphaga mimivirus strain, and reannotation of Mimivirus genes. Colson P, Yutin N, Shabalina SA, Robert C, Fournous G, La Scola B, Raoult D, Koonin EV, Genome Biol Evol 2011 3 737 742
    • (2011) Genome Biol Evol , vol.3 , pp. 737-742
    • Colson, P.1    Yutin, N.2    Shabalina, S.A.3    Robert, C.4    Fournous, G.5    La Scola, B.6    Raoult, D.7    Koonin, E.V.8
  • 16
    • 80054814749 scopus 로고    scopus 로고
    • Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
    • Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM, Proc Natl Acad Sci U S A 2011 108 42 17486 17491
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.42 , pp. 17486-17491
    • Arslan, D.1    Legendre, M.2    Seltzer, V.3    Abergel, C.4    Claverie, J.M.5
  • 17
    • 0346599192 scopus 로고    scopus 로고
    • Unusual life style of giant chlorella viruses
    • Unusual life style of giant chlorella viruses. Van Etten JL, Annu Rev Genet 2003 37 153 195
    • (2003) Annu Rev Genet , vol.37 , pp. 153-195
    • Van Etten, J.L.1
  • 18
    • 74549213613 scopus 로고    scopus 로고
    • Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: A case of hidden complexity
    • Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity. Yutin N, Koonin EV, Biol Direct 2009 4 51
    • (2009) Biol Direct , vol.4 , pp. 51
    • Yutin, N.1    Koonin, E.V.2
  • 19
    • 58149148232 scopus 로고    scopus 로고
    • Phylogenetic evidence for extensive lateral acquisition of cellular genes by Nucleocytoplasmic large DNA viruses
    • Phylogenetic evidence for extensive lateral acquisition of cellular genes by Nucleocytoplasmic large DNA viruses. Filee J, Pouget N, Chandler M, BMC Evol Biol 2008 8 320
    • (2008) BMC Evol Biol , vol.8 , pp. 320
    • Filee, J.1    Pouget, N.2    Chandler, M.3
  • 20
    • 70350439602 scopus 로고    scopus 로고
    • From small hosts come big viruses: The complete genome of a second Ostreococcus tauri virus, OtV-1
    • From small hosts come big viruses: the complete genome of a second Ostreococcus tauri virus, OtV-1. Weynberg KD, Allen MJ, Ashelford K, Scanlan DJ, Wilson WH, Environ Microbiol 2009 11 11 2821 2839
    • (2009) Environ Microbiol , vol.11 , Issue.11 , pp. 2821-2839
    • Weynberg, K.D.1    Allen, M.J.2    Ashelford, K.3    Scanlan, D.J.4    Wilson, W.H.5
  • 21
    • 0038054297 scopus 로고    scopus 로고
    • The role played by viruses in the evolution of their hosts: A view based on informational protein phylogenies
    • The role played by viruses in the evolution of their hosts: a view based on informational protein phylogenies. Filee J, Forterre P, Laurent J, Res Microbiol 2003 154 4 237 243
    • (2003) Res Microbiol , vol.154 , Issue.4 , pp. 237-243
    • Filee, J.1    Forterre, P.2    Laurent, J.3
  • 22
    • 48249105419 scopus 로고    scopus 로고
    • Taxonomic distribution of large DNA viruses in the sea
    • Taxonomic distribution of large DNA viruses in the sea. Monier A, Claverie JM, Ogata H, Genome Biol 2008 9 7 106
    • (2008) Genome Biol , vol.9 , Issue.7 , pp. 18106
    • Monier, A.1    Claverie, J.M.2    Ogata, H.3
  • 23
    • 72849111886 scopus 로고    scopus 로고
    • Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus
    • Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus. Ogata H, Toyoda K, Tomaru Y, Nakayama N, Shirai Y, Claverie JM, Nagasaki K, Virol J 2009 6 178
    • (2009) Virol J , vol.6 , pp. 178
    • Ogata, H.1    Toyoda, K.2    Tomaru, Y.3    Nakayama, N.4    Shirai, Y.5    Claverie, J.M.6    Nagasaki, K.7
  • 25
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes: Quantification and classification
    • Horizontal gene transfer in prokaryotes: quantification and classification. Koonin EV, Makarova KS, Aravind L, Annu Rev Microbiol 2001 55 709 742
    • (2001) Annu Rev Microbiol , vol.55 , pp. 709-742
    • Koonin, E.V.1    Makarova, K.S.2    Aravind, L.3
  • 26
    • 70449562099 scopus 로고    scopus 로고
    • Predicted poxvirus FEN1-like nuclease required for homologous recombination, double-strand break repair and full-size genome formation
    • Predicted poxvirus FEN1-like nuclease required for homologous recombination, double-strand break repair and full-size genome formation. Senkevich TG, Koonin EV, Moss B, Proc Natl Acad Sci U S A 2009 106 42 17921 17926
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.42 , pp. 17921-17926
    • Senkevich, T.G.1    Koonin, E.V.2    Moss, B.3
  • 27
    • 0036333951 scopus 로고    scopus 로고
    • MRNA degradation by the virion host shutoff (Vhs) protein of herpes simplex virus: Genetic and biochemical evidence that Vhs is a nuclease
    • mRNA degradation by the virion host shutoff (Vhs) protein of herpes simplex virus: genetic and biochemical evidence that Vhs is a nuclease. Everly DN Jr, Feng P, Mian IS, Read GS, J Virol 2002 76 17 8560 8571
    • (2002) J Virol , vol.76 , Issue.17 , pp. 8560-8571
    • Everly Jr., D.N.1    Feng, P.2    Mian, I.S.3    Read, G.S.4
  • 28
    • 0029553501 scopus 로고
    • Evolution of viral DNA-dependent RNA polymerases
    • Evolution of viral DNA-dependent RNA polymerases. Sonntag KC, Darai G, Virus Genes 1995 11 2-3 271 284
    • (1995) Virus Genes , vol.11 , Issue.2-3 , pp. 271-284
    • Sonntag, K.C.1    Darai, G.2
  • 29
    • 73649138940 scopus 로고    scopus 로고
    • Molecular evolution of multisubunit RNA polymerases: Sequence analysis
    • Molecular evolution of multisubunit RNA polymerases: sequence analysis. Lane WJ, Darst SA, J Mol Biol 2010 395 4 671 685
    • (2010) J Mol Biol , vol.395 , Issue.4 , pp. 671-685
    • Lane, W.J.1    Darst, S.A.2
  • 30
    • 0033957173 scopus 로고    scopus 로고
    • Vaccinia virus gene A18R DNA helicase is a transcript release factor
    • Vaccinia virus gene A18R DNA helicase is a transcript release factor. Lackner CA, Condit RC, J Biol Chem 2000 275 2 1485 1494
    • (2000) J Biol Chem , vol.275 , Issue.2 , pp. 1485-1494
    • Lackner, C.A.1    Condit, R.C.2
  • 31
    • 39149142191 scopus 로고    scopus 로고
    • DNA and RNA ligases: Structural variations and shared mechanisms
    • DNA and RNA ligases: structural variations and shared mechanisms. Pascal JM, Curr Opin Struct Biol 2008 18 1 96 105
    • (2008) Curr Opin Struct Biol , vol.18 , Issue.1 , pp. 96-105
    • Pascal, J.M.1
  • 32
    • 77950421915 scopus 로고    scopus 로고
    • Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution
    • Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution. Moliner C, Fournier PE, Raoult D, FEMS Microbiol Rev 2010 34 281 294
    • (2010) FEMS Microbiol Rev , vol.34 , pp. 281-294
    • Moliner, C.1    Fournier, P.E.2    Raoult, D.3
  • 33
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Horizontal gene transfer among genomes: the complexity hypothesis. Jain R, Rivera MC, Lake JA, Proc Natl Acad Sci U S A 1999 96 7 3801 3806
    • (1999) Proc Natl Acad Sci U S A , vol.96 , Issue.7 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 35
    • 78650627880 scopus 로고    scopus 로고
    • Giant virus with a remarkable complement of genes infects marine zooplankton
    • Giant virus with a remarkable complement of genes infects marine zooplankton. Fischer MG, Allen MJ, Wilson WH, Suttle CA, Proc Natl Acad Sci U S A 2010 107 45 19508 19513
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.45 , pp. 19508-19513
    • Fischer, M.G.1    Allen, M.J.2    Wilson, W.H.3    Suttle, C.A.4
  • 36
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput. Edgar RC, Nucleic Acids Res 2004 32 5 1792 1797
    • (2004) Nucleic Acids Res , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 38
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Guindon S, Gascuel O, Syst Biol 2003 52 5 696 704
    • (2003) Syst Biol , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 39
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
    • TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. Jobb G, von Haeseler A, Strimmer K, BMC Evol Biol 2004 4 18
    • (2004) BMC Evol Biol , vol.4 , pp. 18
    • Jobb, G.1    Von Haeseler, A.2    Strimmer, K.3
  • 40
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • An approximately unbiased test of phylogenetic tree selection. Shimodaira H, Syst Biol 2002 51 3 492 508
    • (2002) Syst Biol , vol.51 , Issue.3 , pp. 492-508
    • Shimodaira, H.1


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