메뉴 건너뛰기




Volumn 20, Issue 5, 2010, Pages 664-674

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; POLYADENYLATED RNA;

EID: 77951857386     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.102582.109     Document Type: Article
Times cited : (118)

References (32)
  • 1
    • 35949003882 scopus 로고    scopus 로고
    • Virus-encoded aminoacyl-tRNA synthetases: Structural and functional characterization of mimivirus TyrRS and MetRS
    • DOI 10.1128/JVI.01107-07
    • Abergel C, Rudinger-Thirion J, Giegé R, Claverie J-M. 2007. Virus-encoded aminoacyl-tRNA synthetases: Structural and functional characterization of Mimivirus TyrRS and MetRS. J Virol 81: 12406-12417. (Pubitemid 350085854)
    • (2007) Journal of Virology , vol.81 , Issue.22 , pp. 12406-12417
    • Abergel, C.1    Rudinger-Thirion, J.2    Giege, R.3    Claverie, J.-M.4
  • 3
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey TL, Elkan C. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36.
    • (1994) Proc Int Conf Intell Syst Mol Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 4
    • 67651064675 scopus 로고    scopus 로고
    • The not so universal tree of life or the place of viruses in the living world
    • Brüssow H. 2009. The not so universal tree of life or the place of viruses in the living world. Philos Trans R Soc Lond B Biol Sci 364: 2263-2274.
    • (2009) Philos Trans R Soc Lond B Biol Sci , vol.364 , pp. 2263-2274
    • Brüssow, H.1
  • 6
    • 33750105294 scopus 로고    scopus 로고
    • Viruses take center stage in cellular evolution
    • doi: 10.1186/gb-2006-7-6-110
    • Claverie J-M. 2006. Viruses take center stage in cellular evolution. Genome Biol 7: 110. doi: 10.1186/gb-2006-7-6-110.
    • (2006) Genome Biol , vol.7 , pp. 110
    • Claverie, J.-M.1
  • 8
    • 67651229210 scopus 로고    scopus 로고
    • Ten good reasons not to exclude giruses from the evolutionary picture
    • doi: 10.1038/nrmicro2108-c3
    • Claverie J-M, Ogata H. 2009. Ten good reasons not to exclude giruses from the evolutionary picture. Nat Rev Microbiol 7: 615. doi: 10.1038/nrmicro2108- c3.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 615
    • Claverie, J.-M.1    Ogata, H.2
  • 13
    • 33644859575 scopus 로고    scopus 로고
    • Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain
    • DOI 10.1073/pnas.0510333103
    • Forterre P. 2006. Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain. Proc Natl Acad Sci 103: 3669-3674. (Pubitemid 43376613)
    • (2006) Proceedings of the National Academy of Sciences of the United States of America , vol.103 , Issue.10 , pp. 3669-3674
    • Forterre, P.1
  • 14
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    • Iyer LM, Balaji S, Koonin EV, Aravind L. 2006. Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res 117: 156-184.
    • (2006) Virus Res , vol.117 , pp. 156-184
    • Iyer, L.M.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 15
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-The BLAST-like alignment tool
    • Kent WJ. 2002. BLAT-The BLAST-like alignment tool. Genome Res 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 17
    • 84934438960 scopus 로고    scopus 로고
    • UNAFold: Software for nucleic acid folding and hybriziation
    • Markham NR, Zuker M. 2008. UNAFold: Software for nucleic acid folding and hybriziation. Methods Mol Biol 453: 3-31.
    • (2008) Methods Mol Biol , vol.453 , pp. 3-31
    • Markham, N.R.1    Zuker, M.2
  • 18
    • 33947396752 scopus 로고    scopus 로고
    • The mimivirus genome encodes a mitochondrial carrier that transports dATP and dTTP
    • DOI 10.1128/JVI.02386-06
    • Monne M, Robinson AJ, Boes C, Harbour ME, Fearnley IM, Kunji ERS. 2007. The Mimivirus genome encodes a mitochondrial carrier that transports dATP and dTTP. J Virol 81: 3181-3186. (Pubitemid 46456627)
    • (2007) Journal of Virology , vol.81 , Issue.7 , pp. 3181-3186
    • Monne, M.1    Robinson, A.J.2    Boes, C.3    Harbour, M.E.4    Fearnley, I.M.5    Kunji, E.R.S.6
  • 19
    • 63249112982 scopus 로고    scopus 로고
    • Ten reasons to exclude viruses from the tree of life
    • Moreira D, Lopez-Garcia P. 2009. Ten reasons to exclude viruses from the tree of life. Nat Rev Microbiol 7: 306-311.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 306-311
    • Moreira, D.1    Lopez-Garcia, P.2
  • 23
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A. 2000. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 24
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview - Extensible visualization of microarray data
    • DOI 10.1093/bioinformatics/bth349
    • Saldanha AJ. 2004. Java Treeview - extensible visualization of microarray data. Bioinformatics 20: 3246-3248. (Pubitemid 39619217)
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3246-3248
    • Saldanha, A.J.1
  • 26
    • 45549083208 scopus 로고    scopus 로고
    • New roles for large and small viral RNAs in evading host defences
    • Sullivan CS. 2008. New roles for large and small viral RNAs in evading host defences. Nat Rev Genet 9: 503-507.
    • (2008) Nat Rev Genet , vol.9 , pp. 503-507
    • Sullivan, C.S.1
  • 27
    • 41249097397 scopus 로고    scopus 로고
    • Ultrastructural characterization of the giant volcano-like virus factory of Acanthamoeba polyphaga Mimivirus
    • doi: 10.1371/journal.pone.0000328
    • Suzan-Monti M, Scola BL, Barrassi L, Espinosa L, Raoult D. 2007. Ultrastructural characterization of the giant volcano-like virus factory of Acanthamoeba polyphaga Mimivirus. PLoS One 2: e328. doi: 10.1371/journal.pone. 0000328.
    • (2007) PLoS One , vol.2
    • Suzan-Monti, M.1    Scola, B.L.2    Barrassi, L.3    Espinosa, L.4    Raoult, D.5
  • 28
    • 0035346350 scopus 로고    scopus 로고
    • Poxviruses and the origin of the eukaryotic nucleus
    • Takemura M. 2001. Poxviruses and the origin of the eukaryotic nucleus. J Mol Evol 52: 419-425.
    • (2001) J Mol Evol , vol.52 , pp. 419-425
    • Takemura, M.1
  • 29
    • 0036137323 scopus 로고    scopus 로고
    • A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
    • Thijs G, Lescot M, Marchal K, Rombauts S, DeMoor B, Rouzé P, Moreau Y. 2001. A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinformatics 17: 1113-1122. (Pubitemid 33735337)
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1113-1122
    • Thijs, G.1    Lescot, M.2    Marchal, K.3    Rombauts, S.4    De Moor, B.5    Rouze, P.6    Moreau, Y.7
  • 30
    • 0033912561 scopus 로고    scopus 로고
    • A hypothesis for DNA viruses as the origin of eukaryotic replication proteins
    • Villarreal LP, DeFilippis VR. 2000. A hypothesis for DNA viruses as the origin of eukaryotic replication proteins. J Virol 74: 7079-7084.
    • (2000) J Virol , vol.74 , pp. 7079-7084
    • Villarreal, L.P.1    Defilippis, V.R.2
  • 32
    • 45149118680 scopus 로고    scopus 로고
    • Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus
    • DOI 10.1371/journal.pbio.0060114, e114
    • Zauberman N, Mutsafi Y, Halevy DB, Shimoni E, Klein E, Xiao C, Sun S, Minsky A. 2008. Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus. PLoS Biol 6: e114. doi: 10.1371/journal.pbio. 0060114. (Pubitemid 351824745)
    • (2008) PLoS Biology , vol.6 , Issue.5 , pp. 1104-1114
    • Zauberman, N.1    Mutsafi, Y.2    Halevy, D.B.3    Shimoni, E.4    Klein, E.5    Xiao, C.6    Sun, S.7    Minsky, A.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.