GCUA: General codon usage analysis

Bioinformatics

Volumn 14, Issue 4, 1998, Pages 372-373

  McInerney, James O ^a  

^a DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

AMINO ACID SEQUENCE; ARTICLE; CODON USAGE; COMPUTER PROGRAM; MOLECULAR GENETICS; MULTIVARIATE ANALYSIS; PRIORITY JOURNAL;

EID: 0031851853     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/14.4.372     Document Type: Article

References (12)

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3. Grantham, R., Gautier, C., Gouy, M., Jacobzone, M. and Mercier, R. (1981) Codon catalog usage is a genome strategy modulated for gene expressivity. Nucleic Acids Res., 9, r43-r74.
4. Greenacre, M.J. (1984) Theory and Applications of Correspondence Analysis. Academic Press, London.
5. Lloyd, A.T. and Sharp, P.M. (1993) Synonymous codon usage in Kluyveromyces lactis. Yeast, 9, 1219-1228.
6. Lobry, J.R. and Gautier, C. (1994) Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes. Nucleic Acids Res., 22, 3174-3180.
7. Médigue, C., Rouxel, T., Vigier, R. Hénaut, A. and Danchin, A. (1991) Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol. Biol., 222, 851-856.
8. Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
9. Sharp, P.M., Stenico, M., Peden, J.F. and Lloyd, A.T. (1993) Codon usage: mutational bias, translational selection or both? Biochem. Soc. Trans., 21, 835-841.
10. Swofford, D.L. (1993) PAUP: Phylogenetic Analysis Using Parsimony. Smithsonian Institute.
11. Thioulouse, J., Chessel, D. and Dolédec, S. (1997) ADE-4: a multivariate analysis and graphical display software. Stat. Comput., 7, 75-83.
12. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.