-
1
-
-
77953303583
-
An integrative systems biology approach to understanding pulmonary diseases
-
10.1378/chest.09-1850, 20525651
-
Auffray C, Adcock IM, Chung KF, Djukanovic R, Pison C, Sterk PJ. An integrative systems biology approach to understanding pulmonary diseases. Chest 2010, 137:1410-1416. 10.1378/chest.09-1850, 20525651.
-
(2010)
Chest
, vol.137
, pp. 1410-1416
-
-
Auffray, C.1
Adcock, I.M.2
Chung, K.F.3
Djukanovic, R.4
Pison, C.5
Sterk, P.J.6
-
2
-
-
35448941232
-
Molecular epidemiology and biomarkers in etiologic cancer research: the new in light of the old
-
10.1158/1055-9965.EPI-07-0457, 17932342
-
Vineis P, Perera F. Molecular epidemiology and biomarkers in etiologic cancer research: the new in light of the old. Cancer Epidemiol Biomarkers Prev 2007, 16:1954-1965. 10.1158/1055-9965.EPI-07-0457, 17932342.
-
(2007)
Cancer Epidemiol Biomarkers Prev
, vol.16
, pp. 1954-1965
-
-
Vineis, P.1
Perera, F.2
-
3
-
-
55249109737
-
Genetics and genomics: gene expression microarrays
-
10.1161/CIRCULATIONAHA.107.714600, 18838575
-
Ballman KV. Genetics and genomics: gene expression microarrays. Circulation 2008, 118:1593-1597. 10.1161/CIRCULATIONAHA.107.714600, 18838575.
-
(2008)
Circulation
, vol.118
, pp. 1593-1597
-
-
Ballman, K.V.1
-
4
-
-
36249024700
-
Transcriptional responses to complex mixtures: a review
-
10.1016/j.mrrev.2007.08.002, 17888717
-
Sen B, Mahadevan B, DeMarini DM. Transcriptional responses to complex mixtures: a review. Mutation research 2007, 636:144-177. 10.1016/j.mrrev.2007.08.002, 17888717.
-
(2007)
Mutation research
, vol.636
, pp. 144-177
-
-
Sen, B.1
Mahadevan, B.2
DeMarini, D.M.3
-
5
-
-
37349020973
-
Activation of inflammation/NF-kappaB signaling in infants born to arsenic-exposed mothers
-
10.1371/journal.pgen.0030207, 2082467, 18039032
-
Fry RC, Navasumrit P, Valiathan C, Svensson JP, Hogan BJ, Luo M, Bhattacharya S, Kandjanapa K, Soontararuks S, Nookabkaew S, Mahidol C, Ruchirawat M, Samson LD. Activation of inflammation/NF-kappaB signaling in infants born to arsenic-exposed mothers. PLoS Genet 2007, 3:e207. 10.1371/journal.pgen.0030207, 2082467, 18039032.
-
(2007)
PLoS Genet
, vol.3
-
-
Fry, R.C.1
Navasumrit, P.2
Valiathan, C.3
Svensson, J.P.4
Hogan, B.J.5
Luo, M.6
Bhattacharya, S.7
Kandjanapa, K.8
Soontararuks, S.9
Nookabkaew, S.10
Mahidol, C.11
Ruchirawat, M.12
Samson, L.D.13
-
6
-
-
31544483914
-
Gene expression by human monocytes from peripheral blood in response to exposure to metals
-
Jost-Albrecht K, Hofstetter W. Gene expression by human monocytes from peripheral blood in response to exposure to metals. J Biomed Mater Res B Appl Biomater 2006, 76:449-455.
-
(2006)
J Biomed Mater Res B Appl Biomater
, vol.76
, pp. 449-455
-
-
Jost-Albrecht, K.1
Hofstetter, W.2
-
7
-
-
33747342095
-
Genome-wide differential gene expression in children exposed to air pollution in the Czech Republic
-
10.1016/j.mrfmmm.2006.05.032, 16814814
-
van Leeuwen DM, van Herwijnen MH, Pedersen M, Knudsen LE, Kirsch-Volders M, Sram RJ, Staal YC, Bajak E, van Delft JH, Kleinjans JC. Genome-wide differential gene expression in children exposed to air pollution in the Czech Republic. Mutat Res 2006, 600:12-22. 10.1016/j.mrfmmm.2006.05.032, 16814814.
-
(2006)
Mutat Res
, vol.600
, pp. 12-22
-
-
van Leeuwen, D.M.1
van Herwijnen, M.H.2
Pedersen, M.3
Knudsen, L.E.4
Kirsch-Volders, M.5
Sram, R.J.6
Staal, Y.C.7
Bajak, E.8
van Delft, J.H.9
Kleinjans, J.C.10
-
8
-
-
47249149840
-
Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype
-
10.1186/gb-2008-9-6-r100, 2481421, 18570634
-
Lobenhofer EK, Auman JT, Blackshear PE, Boorman GA, Bushel PR, Cunningham ML, Fostel JM, Gerrish K, Heinloth AN, Irwin RD, Malarkey DE, Merrick BA, Sieber SO, Tucker CJ, Ward SM, Wilson RE, Hurban P, Tennant RW, Paules RS. Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype. Genome Biol 2008, 9:R100. 10.1186/gb-2008-9-6-r100, 2481421, 18570634.
-
(2008)
Genome Biol
, vol.9
-
-
Lobenhofer, E.K.1
Auman, J.T.2
Blackshear, P.E.3
Boorman, G.A.4
Bushel, P.R.5
Cunningham, M.L.6
Fostel, J.M.7
Gerrish, K.8
Heinloth, A.N.9
Irwin, R.D.10
Malarkey, D.E.11
Merrick, B.A.12
Sieber, S.O.13
Tucker, C.J.14
Ward, S.M.15
Wilson, R.E.16
Hurban, P.17
Tennant, R.W.18
Paules, R.S.19
-
9
-
-
44449132712
-
Gene expression in human peripheral blood mononuclear cells upon acute ischemic stroke
-
10.1007/s00415-008-0784-z, 18465111
-
Grond-Ginsbach C, Hummel M, Wiest T, Horstmann S, Pfleger K, Hergenhahn M, Hollstein M, Mansmann U, Grau AJ, Wagner S. Gene expression in human peripheral blood mononuclear cells upon acute ischemic stroke. J Neurol 2008, 255:723-731. 10.1007/s00415-008-0784-z, 18465111.
-
(2008)
J Neurol
, vol.255
, pp. 723-731
-
-
Grond-Ginsbach, C.1
Hummel, M.2
Wiest, T.3
Horstmann, S.4
Pfleger, K.5
Hergenhahn, M.6
Hollstein, M.7
Mansmann, U.8
Grau, A.J.9
Wagner, S.10
-
10
-
-
65549141230
-
Gene expression as peripheral biomarkers for sporadic Alzheimer's disease
-
Grunblatt E, Bartl J, Zehetmayer S, Ringel TM, Bauer P, Riederer P, Jacob CP. Gene expression as peripheral biomarkers for sporadic Alzheimer's disease. J Alzheimers Dis 2009, 16:627-634.
-
(2009)
J Alzheimers Dis
, vol.16
, pp. 627-634
-
-
Grunblatt, E.1
Bartl, J.2
Zehetmayer, S.3
Ringel, T.M.4
Bauer, P.5
Riederer, P.6
Jacob, C.P.7
-
11
-
-
38949117304
-
Novel blood-based, five-gene biomarker set for the detection of colorectal cancer
-
10.1158/1078-0432.CCR-07-1801, 18203981
-
Han M, Liew CT, Zhang HW, Chao S, Zheng R, Yip KT, Song ZY, Li HM, Geng XP, Zhu LX, Lin JJ, Marshall KW, Liew CC. Novel blood-based, five-gene biomarker set for the detection of colorectal cancer. Clin Cancer Res 2008, 14:455-460. 10.1158/1078-0432.CCR-07-1801, 18203981.
-
(2008)
Clin Cancer Res
, vol.14
, pp. 455-460
-
-
Han, M.1
Liew, C.T.2
Zhang, H.W.3
Chao, S.4
Zheng, R.5
Yip, K.T.6
Song, Z.Y.7
Li, H.M.8
Geng, X.P.9
Zhu, L.X.10
Lin, J.J.11
Marshall, K.W.12
Liew, C.C.13
-
12
-
-
38149114028
-
Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes
-
10.1186/1752-0509-1-15, 1839893, 17408499
-
Bushel PR, Wolfinger RD, Gibson G. Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes. BMC Syst Biol 2007, 1:15. 10.1186/1752-0509-1-15, 1839893, 17408499.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 15
-
-
Bushel, P.R.1
Wolfinger, R.D.2
Gibson, G.3
-
13
-
-
33746260458
-
Phenotypic anchoring of arsenic and cadmium toxicity in three hepatic-related cell systems reveals compound- and cell-specific selective up-regulation of stress protein expression: implications for fingerprint profiling of cytotoxicity
-
10.1016/j.cbi.2006.04.003, 16729991
-
Gottschalg E, Moore NE, Ryan AK, Travis LC, Waller RC, Pratt S, Atmaca M, Kind CN, Fry JR. Phenotypic anchoring of arsenic and cadmium toxicity in three hepatic-related cell systems reveals compound- and cell-specific selective up-regulation of stress protein expression: implications for fingerprint profiling of cytotoxicity. Chem Biol Interact 2006, 161:251-261. 10.1016/j.cbi.2006.04.003, 16729991.
-
(2006)
Chem Biol Interact
, vol.161
, pp. 251-261
-
-
Gottschalg, E.1
Moore, N.E.2
Ryan, A.K.3
Travis, L.C.4
Waller, R.C.5
Pratt, S.6
Atmaca, M.7
Kind, C.N.8
Fry, J.R.9
-
14
-
-
0038176487
-
Phenotypic anchoring: linking cause and effect
-
10.1289/ehp.111-a338, 1241511, 12760838
-
Paules R. Phenotypic anchoring: linking cause and effect. Environ Health Perspect 2003, 111:A338-A339. 10.1289/ehp.111-a338, 1241511, 12760838.
-
(2003)
Environ Health Perspect
, vol.111
-
-
Paules, R.1
-
15
-
-
47649132170
-
The environmental contribution to gene expression profiles
-
Gibson G. The environmental contribution to gene expression profiles. Nat Rev Genet 2008, 9:575-581.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 575-581
-
-
Gibson, G.1
-
16
-
-
33845336152
-
The balance between heritable and environmental aetiology of human disease
-
Hemminki K, Lorenzo Bermejo J, Forsti A
-
Hemminki K, Lorenzo Bermejo J, Forsti A. The balance between heritable and environmental aetiology of human disease. Nat Rev Genet 2006, 7(Hemminki K, Lorenzo Bermejo J, Forsti A):958-965.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 958-965
-
-
Hemminki, K.1
Lorenzo Bermejo, J.2
Forsti, A.3
-
17
-
-
35948987588
-
Host defense genes in asthma and sepsis and the role of the environment
-
10.1097/ACI.0b013e3282f1fb9a, 17989521
-
Gao L, Tsai YJ, Grigoryev DN, Barnes KC. Host defense genes in asthma and sepsis and the role of the environment. Curr Opin Allergy Clin Immunol 2007, 7:459-467. 10.1097/ACI.0b013e3282f1fb9a, 17989521.
-
(2007)
Curr Opin Allergy Clin Immunol
, vol.7
, pp. 459-467
-
-
Gao, L.1
Tsai, Y.J.2
Grigoryev, D.N.3
Barnes, K.C.4
-
18
-
-
0037184816
-
Influences on the development of allergy and asthma
-
Peden DB. Influences on the development of allergy and asthma. Toxicology 2002, 181-182:323-328.
-
(2002)
Toxicology
, vol.181-182
, pp. 323-328
-
-
Peden, D.B.1
-
19
-
-
2642585738
-
The case for a US prospective cohort study of genes and environment
-
10.1038/nature02628, 15164074
-
Collins FS. The case for a US prospective cohort study of genes and environment. Nature 2004, 429:475-477. 10.1038/nature02628, 15164074.
-
(2004)
Nature
, vol.429
, pp. 475-477
-
-
Collins, F.S.1
-
20
-
-
33847022185
-
Genes, environment, health, and disease: facing up to complexity
-
10.1159/000099178, 17283435
-
Manolio TA, Collins FS. Genes, environment, health, and disease: facing up to complexity. Hum Hered 2007, 63:63-66. 10.1159/000099178, 17283435.
-
(2007)
Hum Hered
, vol.63
, pp. 63-66
-
-
Manolio, T.A.1
Collins, F.S.2
-
21
-
-
48249085691
-
Cluster analysis and clinical asthma phenotypes
-
10.1164/rccm.200711-1754OC, 18480428
-
Haldar P, Pavord ID, Shaw DE, Berry MA, Thomas M, Brightling CE, Wardlaw AJ, Green RH. Cluster analysis and clinical asthma phenotypes. Am J Respir Crit Care Med 2008, 178:218-224. 10.1164/rccm.200711-1754OC, 18480428.
-
(2008)
Am J Respir Crit Care Med
, vol.178
, pp. 218-224
-
-
Haldar, P.1
Pavord, I.D.2
Shaw, D.E.3
Berry, M.A.4
Thomas, M.5
Brightling, C.E.6
Wardlaw, A.J.7
Green, R.H.8
-
22
-
-
84862888802
-
Novel severe wheezy young children phenotypes: Boys atopic multiple-trigger and girls nonatopic uncontrolled wheeze
-
Just J, Gouvis-Echraghi R, Couderc R, Guillemot-Lambert N, Saint-Pierre P. Novel severe wheezy young children phenotypes: Boys atopic multiple-trigger and girls nonatopic uncontrolled wheeze. J Allergy Clin Immunol 2012, 130(103-110):e108.
-
(2012)
J Allergy Clin Immunol
, vol.130
, Issue.103-110
-
-
Just, J.1
Gouvis-Echraghi, R.2
Couderc, R.3
Guillemot-Lambert, N.4
Saint-Pierre, P.5
-
23
-
-
79551505136
-
Asthma endotypes: a new approach to classification of disease entities within the asthma syndrome
-
10.1016/j.jaci.2010.11.037, 21281866
-
Lotvall J, Akdis CA, Bacharier LB, Bjermer L, Casale TB, Custovic A, Lemanske RF, Wardlaw AJ, Wenzel SE, Greenberger PA. Asthma endotypes: a new approach to classification of disease entities within the asthma syndrome. J Allergy Clin Immunol 2011, 127:355-360. 10.1016/j.jaci.2010.11.037, 21281866.
-
(2011)
J Allergy Clin Immunol
, vol.127
, pp. 355-360
-
-
Lotvall, J.1
Akdis, C.A.2
Bacharier, L.B.3
Bjermer, L.4
Casale, T.B.5
Custovic, A.6
Lemanske, R.F.7
Wardlaw, A.J.8
Wenzel, S.E.9
Greenberger, P.A.10
-
24
-
-
33747756534
-
Asthma: defining of the persistent adult phenotypes
-
10.1016/S0140-6736(06)69290-8, 16935691
-
Wenzel SE. Asthma: defining of the persistent adult phenotypes. Lancet 2006, 368:804-813. 10.1016/S0140-6736(06)69290-8, 16935691.
-
(2006)
Lancet
, vol.368
, pp. 804-813
-
-
Wenzel, S.E.1
-
25
-
-
33845987340
-
National Heart LBIsSARP: Characterization of the severe asthma phenotype by the National Heart, Lung, and Blood Institute's Severe Asthma Research Program
-
10.1016/j.jaci.2006.11.639, 2837934, 17291857
-
Moore WC, Bleecker ER, Curran-Everett D, Erzurum SC, Ameredes BT, Bacharier L, Calhoun WJ, Castro M, Chung KF, Clark MP, Dweik RA, Fitzpatrick AM, Gaston B, Hew M, Hussain I, Jarjour NN, Israel E, Levy BD, Murphy JR, Peters SP, Teague WG, Meyers DA, Busse WW, Wenzel SE. National Heart LBIsSARP: Characterization of the severe asthma phenotype by the National Heart, Lung, and Blood Institute's Severe Asthma Research Program. J Allergy Clin Immunol 2007, 119:405-413. 10.1016/j.jaci.2006.11.639, 2837934, 17291857.
-
(2007)
J Allergy Clin Immunol
, vol.119
, pp. 405-413
-
-
Moore, W.C.1
Bleecker, E.R.2
Curran-Everett, D.3
Erzurum, S.C.4
Ameredes, B.T.5
Bacharier, L.6
Calhoun, W.J.7
Castro, M.8
Chung, K.F.9
Clark, M.P.10
Dweik, R.A.11
Fitzpatrick, A.M.12
Gaston, B.13
Hew, M.14
Hussain, I.15
Jarjour, N.N.16
Israel, E.17
Levy, B.D.18
Murphy, J.R.19
Peters, S.P.20
Teague, W.G.21
Meyers, D.A.22
Busse, W.W.23
Wenzel, S.E.24
more..
-
26
-
-
77952537973
-
Cluster analysis in severe emphysema subjects using phenotype and genotype data: an exploratory investigation
-
10.1186/1465-9921-11-30, 2850331, 20233420
-
Cho MH, Washko GR, Hoffmann TJ, Criner GJ, Hoffman EA, Martinez FJ, Laird N, Reilly JJ, Silverman EK. Cluster analysis in severe emphysema subjects using phenotype and genotype data: an exploratory investigation. Respir Res 2010, 11:30. 10.1186/1465-9921-11-30, 2850331, 20233420.
-
(2010)
Respir Res
, vol.11
, pp. 30
-
-
Cho, M.H.1
Washko, G.R.2
Hoffmann, T.J.3
Criner, G.J.4
Hoffman, E.A.5
Martinez, F.J.6
Laird, N.7
Reilly, J.J.8
Silverman, E.K.9
-
27
-
-
74849094691
-
Phenotypic differences between pediatric and adult asthma
-
10.1513/pats.200906-046DP, 20008882
-
Bush A, Menzies-Gow A. Phenotypic differences between pediatric and adult asthma. Proc Am Thorac Soc 2009, 6:712-719. 10.1513/pats.200906-046DP, 20008882.
-
(2009)
Proc Am Thorac Soc
, vol.6
, pp. 712-719
-
-
Bush, A.1
Menzies-Gow, A.2
-
28
-
-
79551500941
-
Heterogeneity of severe asthma in childhood: confirmation by cluster analysis of children in the National Institutes of Health/National Heart, Lung, and Blood Institute Severe Asthma Research Program
-
e381-313, 10.1016/j.jaci.2010.11.015, 3060668, 21195471, National Institutes of Health/National Heart L
-
Fitzpatrick AM, Teague WG, Meyers DA, Peters SP, Li X, Li H, Wenzel SE, Aujla S, Castro M, Bacharier LB, Gaston BM, Bleecker ER, Moore WC, National Institutes of Health/National Heart L Heterogeneity of severe asthma in childhood: confirmation by cluster analysis of children in the National Institutes of Health/National Heart, Lung, and Blood Institute Severe Asthma Research Program. J Allergy Clin Immunol 2011, 127:382-389. e381-313, 10.1016/j.jaci.2010.11.015, 3060668, 21195471, National Institutes of Health/National Heart L.
-
(2011)
J Allergy Clin Immunol
, vol.127
, pp. 382-389
-
-
Fitzpatrick, A.M.1
Teague, W.G.2
Meyers, D.A.3
Peters, S.P.4
Li, X.5
Li, H.6
Wenzel, S.E.7
Aujla, S.8
Castro, M.9
Bacharier, L.B.10
Gaston, B.M.11
Bleecker, E.R.12
Moore, W.C.13
-
29
-
-
76149146032
-
National Heart L, Blood Institute's Severe Asthma Research P: Identification of asthma phenotypes using cluster analysis in the Severe Asthma Research Program
-
10.1164/rccm.200906-0896OC, 2822971, 19892860
-
Moore WC, Meyers DA, Wenzel SE, Teague WG, Li H, Li X, D'Agostino R, Castro M, Curran-Everett D, Fitzpatrick AM, Gaston B, Jarjour NN, Sorkness R, Calhoun WJ, Chung KF, Comhair SA, Dweik RA, Israel E, Peters SP, Busse WW, Erzurum SC, Bleecker ER. National Heart L, Blood Institute's Severe Asthma Research P: Identification of asthma phenotypes using cluster analysis in the Severe Asthma Research Program. Am J Respir Crit Care Med 2010, 181:315-323. 10.1164/rccm.200906-0896OC, 2822971, 19892860.
-
(2010)
Am J Respir Crit Care Med
, vol.181
, pp. 315-323
-
-
Moore, W.C.1
Meyers, D.A.2
Wenzel, S.E.3
Teague, W.G.4
Li, H.5
Li, X.6
D'Agostino, R.7
Castro, M.8
Curran-Everett, D.9
Fitzpatrick, A.M.10
Gaston, B.11
Jarjour, N.N.12
Sorkness, R.13
Calhoun, W.J.14
Chung, K.F.15
Comhair, S.A.16
Dweik, R.A.17
Israel, E.18
Peters, S.P.19
Busse, W.W.20
Erzurum, S.C.21
Bleecker, E.R.22
more..
-
30
-
-
69249098135
-
Distinct clinical phenotypes of airways disease defined by cluster analysis
-
10.1183/09031936.00174408, 19357143
-
Weatherall M, Travers J, Shirtcliffe PM, Marsh SE, Williams MV, Nowitz MR, Aldington S, Beasley R. Distinct clinical phenotypes of airways disease defined by cluster analysis. Eur Respir J 2009, 34:812-818. 10.1183/09031936.00174408, 19357143.
-
(2009)
Eur Respir J
, vol.34
, pp. 812-818
-
-
Weatherall, M.1
Travers, J.2
Shirtcliffe, P.M.3
Marsh, S.E.4
Williams, M.V.5
Nowitz, M.R.6
Aldington, S.7
Beasley, R.8
-
31
-
-
20344372908
-
Asthma phenotypes, risk factors, and measures of severity in a national sample of US children
-
10.1542/peds.2004-0529, 15741378
-
Kelley CF, Mannino DM, Homa DM, Savage-Brown A, Holguin F. Asthma phenotypes, risk factors, and measures of severity in a national sample of US children. Pediatrics 2005, 115:726-731. 10.1542/peds.2004-0529, 15741378.
-
(2005)
Pediatrics
, vol.115
, pp. 726-731
-
-
Kelley, C.F.1
Mannino, D.M.2
Homa, D.M.3
Savage-Brown, A.4
Holguin, F.5
-
32
-
-
79959363586
-
Human asthma phenotypes: from the clinic, to cytokines, and back again
-
10.1111/j.1600-065X.2011.01032.x, 3391010, 21682748
-
Bhakta NR, Woodruff PG. Human asthma phenotypes: from the clinic, to cytokines, and back again. Immunol Rev 2011, 242:220-232. 10.1111/j.1600-065X.2011.01032.x, 3391010, 21682748.
-
(2011)
Immunol Rev
, vol.242
, pp. 220-232
-
-
Bhakta, N.R.1
Woodruff, P.G.2
-
33
-
-
69249150516
-
T-helper type 2-driven inflammation defines major subphenotypes of asthma
-
10.1164/rccm.200903-0392OC, 2742757, 19483109
-
Woodruff PG, Modrek B, Choy DF, Jia G, Abbas AR, Ellwanger A, Koth LL, Arron JR, Fahy JV. T-helper type 2-driven inflammation defines major subphenotypes of asthma. Am J Respir Crit Care Med 2009, 180:388-395. 10.1164/rccm.200903-0392OC, 2742757, 19483109.
-
(2009)
Am J Respir Crit Care Med
, vol.180
, pp. 388-395
-
-
Woodruff, P.G.1
Modrek, B.2
Choy, D.F.3
Jia, G.4
Abbas, A.R.5
Ellwanger, A.6
Koth, L.L.7
Arron, J.R.8
Fahy, J.V.9
-
34
-
-
35649028488
-
Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids
-
10.1073/pnas.0707413104, 2000427, 17898169
-
Woodruff PG, Boushey HA, Dolganov GM, Barker CS, Yang YH, Donnelly S, Ellwanger A, Sidhu SS, Dao-Pick TP, Pantoja C, Erle DJ, Yamamoto KR, Fahy JV. Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids. Proc Natl Acad Sci USA 2007, 104:15858-15863. 10.1073/pnas.0707413104, 2000427, 17898169.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 15858-15863
-
-
Woodruff, P.G.1
Boushey, H.A.2
Dolganov, G.M.3
Barker, C.S.4
Yang, Y.H.5
Donnelly, S.6
Ellwanger, A.7
Sidhu, S.S.8
Dao-Pick, T.P.9
Pantoja, C.10
Erle, D.J.11
Yamamoto, K.R.12
Fahy, J.V.13
-
35
-
-
79251582522
-
Gene expression patterns of Th2 inflammation and intercellular communication in asthmatic airways
-
10.4049/jimmunol.1002568, 21187436
-
Choy DF, Modrek B, Abbas AR, Kummerfeld S, Clark HF, Wu LC, Fedorowicz G, Modrusan Z, Fahy JV, Woodruff PG, Arron JR. Gene expression patterns of Th2 inflammation and intercellular communication in asthmatic airways. J Immunol 2011, 186:1861-1869. 10.4049/jimmunol.1002568, 21187436.
-
(2011)
J Immunol
, vol.186
, pp. 1861-1869
-
-
Choy, D.F.1
Modrek, B.2
Abbas, A.R.3
Kummerfeld, S.4
Clark, H.F.5
Wu, L.C.6
Fedorowicz, G.7
Modrusan, Z.8
Fahy, J.V.9
Woodruff, P.G.10
Arron, J.R.11
-
36
-
-
78650864775
-
Transcriptional phenotypes of asthma defined by gene expression profiling of induced sputum samples
-
160 e151-159, 10.1016/j.jaci.2010.10.024, 21211650
-
Baines KJ, Simpson JL, Wood LG, Scott RJ, Gibson PG. Transcriptional phenotypes of asthma defined by gene expression profiling of induced sputum samples. J Allergy Clin Immunol 2011, 127:153-160. 160 e151-159, 10.1016/j.jaci.2010.10.024, 21211650.
-
(2011)
J Allergy Clin Immunol
, vol.127
, pp. 153-160
-
-
Baines, K.J.1
Simpson, J.L.2
Wood, L.G.3
Scott, R.J.4
Gibson, P.G.5
-
37
-
-
79960309646
-
Pathways activated during human asthma exacerbation as revealed by gene expression patterns in blood
-
10.1371/journal.pone.0021902, 3136489, 21779351
-
Bjornsdottir US, Holgate ST, Reddy PS, Hill AA, McKee CM, Csimma CI, Weaver AA, Legault HM, Small CG, Ramsey RC, Ellis DK, Burke CM, Thompson PJ, Howarth PH, Wardlaw AJ, Bardin PG, Bernstein DI, Irving LB, Chupp GL, Bensch GW, Stahlman JE, Karetzky M, Baker JW, Miller RL, Goodman BH, Raible DG, Goldman SJ, Miller DK, Ryan JL, Dorner AJ, et al. Pathways activated during human asthma exacerbation as revealed by gene expression patterns in blood. PLoS One 2011, 6:e21902. 10.1371/journal.pone.0021902, 3136489, 21779351.
-
(2011)
PLoS One
, vol.6
-
-
Bjornsdottir, U.S.1
Holgate, S.T.2
Reddy, P.S.3
Hill, A.A.4
McKee, C.M.5
Csimma, C.I.6
Weaver, A.A.7
Legault, H.M.8
Small, C.G.9
Ramsey, R.C.10
Ellis, D.K.11
Burke, C.M.12
Thompson, P.J.13
Howarth, P.H.14
Wardlaw, A.J.15
Bardin, P.G.16
Bernstein, D.I.17
Irving, L.B.18
Chupp, G.L.19
Bensch, G.W.20
Stahlman, J.E.21
Karetzky, M.22
Baker, J.W.23
Miller, R.L.24
Goodman, B.H.25
Raible, D.G.26
Goldman, S.J.27
Miller, D.K.28
Ryan, J.L.29
Dorner, A.J.30
more..
-
38
-
-
79959736794
-
Identification of novel diagnostic biomarkers for asthma and chronic obstructive pulmonary disease
-
10.1164/rccm.201010-1623OC, 21471098
-
Verrills NM, Irwin JA, He XY, Wood LG, Powell H, Simpson JL, McDonald VM, Sim A, Gibson PG. Identification of novel diagnostic biomarkers for asthma and chronic obstructive pulmonary disease. Am J Respir Crit Care Med 2011, 183:1633-1643. 10.1164/rccm.201010-1623OC, 21471098.
-
(2011)
Am J Respir Crit Care Med
, vol.183
, pp. 1633-1643
-
-
Verrills, N.M.1
Irwin, J.A.2
He, X.Y.3
Wood, L.G.4
Powell, H.5
Simpson, J.L.6
McDonald, V.M.7
Sim, A.8
Gibson, P.G.9
-
39
-
-
79956053383
-
Mechanistic indicators of childhood asthma (MICA) study: piloting an integrative design for evaluating environmental health
-
10.1186/1471-2458-11-344, 3112137, 21595901
-
Gallagher J, Hudgens E, Williams A, Inmon J, Rhoney S, Andrews G, Reif D, Heidenfelder B, Neas L, Williams R, Johnson M, Ozkaynak H, Edwards S, Hubal EC. Mechanistic indicators of childhood asthma (MICA) study: piloting an integrative design for evaluating environmental health. BMC Public Health 2011, 11:344. 10.1186/1471-2458-11-344, 3112137, 21595901.
-
(2011)
BMC Public Health
, vol.11
, pp. 344
-
-
Gallagher, J.1
Hudgens, E.2
Williams, A.3
Inmon, J.4
Rhoney, S.5
Andrews, G.6
Reif, D.7
Heidenfelder, B.8
Neas, L.9
Williams, R.10
Johnson, M.11
Ozkaynak, H.12
Edwards, S.13
Hubal, E.C.14
-
40
-
-
0036947892
-
Robust estimators for expression analysis
-
10.1093/bioinformatics/18.12.1585, 12490442
-
Hubbell E, Liu WM, Mei R. Robust estimators for expression analysis. Bioinformatics 2002, 18:1585-1592. 10.1093/bioinformatics/18.12.1585, 12490442.
-
(2002)
Bioinformatics
, vol.18
, pp. 1585-1592
-
-
Hubbell, E.1
Liu, W.M.2
Mei, R.3
-
42
-
-
84950442671
-
Approximate evaluation technique for the single-link and complete-link hierarchical clustering procedures
-
Hubert L. Approximate evaluation technique for the single-link and complete-link hierarchical clustering procedures. J Am Stat Assoc 1974, 69:698-704.
-
(1974)
J Am Stat Assoc
, vol.69
, pp. 698-704
-
-
Hubert, L.1
-
43
-
-
34250115918
-
An examination of procedures of determining the number of cluster in a data set
-
Milligan GW, Cooper MC. An examination of procedures of determining the number of cluster in a data set. Psychometrika 1985, 50:159-179.
-
(1985)
Psychometrika
, vol.50
, pp. 159-179
-
-
Milligan, G.W.1
Cooper, M.C.2
-
44
-
-
65449186592
-
Clustering of gene expression data and end-point measurements by simulated annealing
-
10.1142/S021972000900400X, 2853885, 19226667
-
Bushel PR. Clustering of gene expression data and end-point measurements by simulated annealing. J Bioinform Comput Biol 2009, 7:193-215. 10.1142/S021972000900400X, 2853885, 19226667.
-
(2009)
J Bioinform Comput Biol
, vol.7
, pp. 193-215
-
-
Bushel, P.R.1
-
45
-
-
0003500248
-
C4.5: programs for machine learning
-
San Mateo, CA: Morgan Kaufmann Publishers, Inc
-
Quinlan JR. C4.5: programs for machine learning. Morgan Kaufmann Series in Machine Learning 1993, San Mateo, CA: Morgan Kaufmann Publishers, Inc.
-
(1993)
Morgan Kaufmann Series in Machine Learning
-
-
Quinlan, J.R.1
-
46
-
-
0041382385
-
-
The Netherlands: Kluwer Academic Publishers, Breiman L
-
Random Forests 2001, The Netherlands: Kluwer Academic Publishers, Breiman L.
-
(2001)
Random Forests
-
-
-
47
-
-
52049087356
-
Endotyping asthma: new insights into key pathogenic mechanisms in a complex, heterogeneous disease
-
10.1016/S0140-6736(08)61452-X, 18805339
-
Anderson GP. Endotyping asthma: new insights into key pathogenic mechanisms in a complex, heterogeneous disease. Lancet 2008, 372:1107-1119. 10.1016/S0140-6736(08)61452-X, 18805339.
-
(2008)
Lancet
, vol.372
, pp. 1107-1119
-
-
Anderson, G.P.1
-
48
-
-
84856845581
-
Severe asthma: from characteristics to phenotypes to endotypes
-
10.1111/j.1365-2222.2011.03929.x, 22251060
-
Wenzel S. Severe asthma: from characteristics to phenotypes to endotypes. Clin Exp Allergy 2012, 42:650-658. 10.1111/j.1365-2222.2011.03929.x, 22251060.
-
(2012)
Clin Exp Allergy
, vol.42
, pp. 650-658
-
-
Wenzel, S.1
-
49
-
-
77649293496
-
The effect of food intake on gene expression in human peripheral blood
-
10.1093/hmg/ddp476, 2792154, 19837700
-
Leonardson AS, Zhu J, Chen Y, Wang K, Lamb JR, Reitman M, Emilsson V, Schadt EE. The effect of food intake on gene expression in human peripheral blood. Hum Mol Genet 2010, 19:159-169. 10.1093/hmg/ddp476, 2792154, 19837700.
-
(2010)
Hum Mol Genet
, vol.19
, pp. 159-169
-
-
Leonardson, A.S.1
Zhu, J.2
Chen, Y.3
Wang, K.4
Lamb, J.R.5
Reitman, M.6
Emilsson, V.7
Schadt, E.E.8
-
50
-
-
38049025722
-
Multivariate analysis of complex gene expression and clinical phenotypes with genetic marker data
-
Beyene J, Tritchler D, Bull SB, Cartier KC, Jonasdottir G, Kraja AT, Li N, Nock NL, Parkhomenko E, Rao JS, Stein CM, Sutradhar R, Waaijenborg S, Wang KS, Wang Y, Wolkow P. Multivariate analysis of complex gene expression and clinical phenotypes with genetic marker data. Genet Epidemiol 2007, 31(Suppl 1):S103-S109.
-
(2007)
Genet Epidemiol
, vol.31
, Issue.SUPPL 1
-
-
Beyene, J.1
Tritchler, D.2
Bull, S.B.3
Cartier, K.C.4
Jonasdottir, G.5
Kraja, A.T.6
Li, N.7
Nock, N.L.8
Parkhomenko, E.9
Rao, J.S.10
Stein, C.M.11
Sutradhar, R.12
Waaijenborg, S.13
Wang, K.S.14
Wang, Y.15
Wolkow, P.16
-
51
-
-
84969213492
-
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
-
10.1038/nature05911, 2719288, 17554300
-
Consortium WTCC. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 2007, 447:661-678. 10.1038/nature05911, 2719288, 17554300.
-
(2007)
Nature
, vol.447
, pp. 661-678
-
-
Consortium, W.T.C.C.1
-
52
-
-
56749149825
-
Replication of the Wellcome Trust genome-wide association study of essential hypertension: the Family Blood Pressure Program
-
10.1038/ejhg.2008.102, 2585612, 18523456
-
Ehret GB, Morrison AC, O'Connor AA, Grove ML, Baird L, Schwander K, Weder A, Cooper RS, Rao DC, Hunt SC, Boerwinkle E, Chakravarti A. Replication of the Wellcome Trust genome-wide association study of essential hypertension: the Family Blood Pressure Program. Eur J Hum Genet 2008, 16:1507-1511. 10.1038/ejhg.2008.102, 2585612, 18523456.
-
(2008)
Eur J Hum Genet
, vol.16
, pp. 1507-1511
-
-
Ehret, G.B.1
Morrison, A.C.2
O'Connor, A.A.3
Grove, M.L.4
Baird, L.5
Schwander, K.6
Weder, A.7
Cooper, R.S.8
Rao, D.C.9
Hunt, S.C.10
Boerwinkle, E.11
Chakravarti, A.12
-
53
-
-
77952557918
-
Missing heritability and strategies for finding the underlying causes of complex disease
-
10.1038/nrg2809, 2942068, 20479774
-
Eichler EE, Flint J, Gibson G, Kong A, Leal SM, Moore JH, Nadeau JH. Missing heritability and strategies for finding the underlying causes of complex disease. Nat Rev Genet 2010, 11:446-450. 10.1038/nrg2809, 2942068, 20479774.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 446-450
-
-
Eichler, E.E.1
Flint, J.2
Gibson, G.3
Kong, A.4
Leal, S.M.5
Moore, J.H.6
Nadeau, J.H.7
-
54
-
-
79952262430
-
Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project
-
10.1371/journal.pgen.1001300, 3037413, 21347282
-
Lettre G, Palmer CD, Young T, Ejebe KG, Allayee H, Benjamin EJ, Bennett F, Bowden DW, Chakravarti A, Dreisbach A, Farlow DN, Folsom AR, Fornage M, Forrester T, Fox E, Haiman CA, Hartiala J, Harris TB, Hazen SL, Heckbert SR, Henderson BE, Hirschhorn JN, Keating BJ, Kritchevsky SB, Larkin E, Li M, Rudock ME, McKenzie CA, Meigs JB, Meng YA, et al. Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. PLoS Genet 2011, 7:e1001300. 10.1371/journal.pgen.1001300, 3037413, 21347282.
-
(2011)
PLoS Genet
, vol.7
-
-
Lettre, G.1
Palmer, C.D.2
Young, T.3
Ejebe, K.G.4
Allayee, H.5
Benjamin, E.J.6
Bennett, F.7
Bowden, D.W.8
Chakravarti, A.9
Dreisbach, A.10
Farlow, D.N.11
Folsom, A.R.12
Fornage, M.13
Forrester, T.14
Fox, E.15
Haiman, C.A.16
Hartiala, J.17
Harris, T.B.18
Hazen, S.L.19
Heckbert, S.R.20
Henderson, B.E.21
Hirschhorn, J.N.22
Keating, B.J.23
Kritchevsky, S.B.24
Larkin, E.25
Li, M.26
Rudock, M.E.27
McKenzie, C.A.28
Meigs, J.B.29
Meng, Y.A.30
more..
-
55
-
-
76249106437
-
Asthma: time to confront some inconvenient truths
-
10.1111/j.1440-1843.2009.01700.x, 20199640
-
Hancox RJ, Le Souef PN, Anderson GP, Reddel HK, Chang AB, Beasley R. Asthma: time to confront some inconvenient truths. Respirology 2010, 15:194-201. 10.1111/j.1440-1843.2009.01700.x, 20199640.
-
(2010)
Respirology
, vol.15
, pp. 194-201
-
-
Hancox, R.J.1
Le Souef, P.N.2
Anderson, G.P.3
Reddel, H.K.4
Chang, A.B.5
Beasley, R.6
-
56
-
-
70249134919
-
Molecular networks as sensors and drivers of common human diseases
-
10.1038/nature08454, 19741703
-
Schadt EE. Molecular networks as sensors and drivers of common human diseases. Nature 2009, 461:218-223. 10.1038/nature08454, 19741703.
-
(2009)
Nature
, vol.461
, pp. 218-223
-
-
Schadt, E.E.1
-
57
-
-
78650623080
-
Implications of the exposome for exposure science
-
10.1038/jes.2010.50, 21081972
-
Rappaport SM. Implications of the exposome for exposure science. J Expo Sci Environ Epidemiol 2011, 21:5-9. 10.1038/jes.2010.50, 21081972.
-
(2011)
J Expo Sci Environ Epidemiol
, vol.21
, pp. 5-9
-
-
Rappaport, S.M.1
-
58
-
-
23844523425
-
Complementing the genome with an "exposome": the outstanding challenge of environmental exposure measurement in molecular epidemiology
-
10.1158/1055-9965.EPI-05-0456, 16103423
-
Wild CP. Complementing the genome with an "exposome": the outstanding challenge of environmental exposure measurement in molecular epidemiology. Cancer Epidemiol Biomarkers Prev 2005, 14:1847-1850. 10.1158/1055-9965.EPI-05-0456, 16103423.
-
(2005)
Cancer Epidemiol Biomarkers Prev
, vol.14
, pp. 1847-1850
-
-
Wild, C.P.1
-
59
-
-
61649092274
-
Environmental exposure measurement in cancer epidemiology
-
2720689, 19033256
-
Wild CP. Environmental exposure measurement in cancer epidemiology. Mutagenesis 2009, 24:117-125. 2720689, 19033256.
-
(2009)
Mutagenesis
, vol.24
, pp. 117-125
-
-
Wild, C.P.1
-
60
-
-
77958192172
-
Epidemiology Environment and disease risks
-
10.1126/science.1192603, 20966241
-
Rappaport SM, Smith MT. Epidemiology Environment and disease risks. Science 2010, 330:460-461. 10.1126/science.1192603, 20966241.
-
(2010)
Science
, vol.330
, pp. 460-461
-
-
Rappaport, S.M.1
Smith, M.T.2
-
61
-
-
79953733693
-
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
-
10.1038/nature09922, 3086762, 21475195
-
Wang Z, Klipfell E, Bennett BJ, Koeth R, Levison BS, Dugar B, Feldstein AE, Britt EB, Fu X, Chung YM, Wu Y, Schauer P, Smith JD, Allayee H, Tang WH, DiDonato JA, Lusis AJ, Hazen SL. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 2011, 472:57-63. 10.1038/nature09922, 3086762, 21475195.
-
(2011)
Nature
, vol.472
, pp. 57-63
-
-
Wang, Z.1
Klipfell, E.2
Bennett, B.J.3
Koeth, R.4
Levison, B.S.5
Dugar, B.6
Feldstein, A.E.7
Britt, E.B.8
Fu, X.9
Chung, Y.M.10
Wu, Y.11
Schauer, P.12
Smith, J.D.13
Allayee, H.14
Tang, W.H.15
DiDonato, J.A.16
Lusis, A.J.17
Hazen, S.L.18
-
62
-
-
77953886372
-
An Environment-Wide Association Study (EWAS) on type 2 diabetes mellitus
-
10.1371/journal.pone.0010746, 2873978, 20505766
-
Patel CJ, Bhattacharya J, Butte AJ. An Environment-Wide Association Study (EWAS) on type 2 diabetes mellitus. PLoS One 2010, 5:e10746. 10.1371/journal.pone.0010746, 2873978, 20505766.
-
(2010)
PLoS One
, vol.5
-
-
Patel, C.J.1
Bhattacharya, J.2
Butte, A.J.3
-
64
-
-
84888022733
-
-
Workshop on Emerging Technologies for Measuring Individual Expsomes
-
Workshop on Emerging Technologies for Measuring Individual Expsomes Emerging Science for Environmental Health Decisions. December 8-9, Washington, DC http://nas-sites.org/emergingscience/workshops/individual-exposomes/, Workshop on Emerging Technologies for Measuring Individual Expsomes.
-
Emerging Science for Environmental Health Decisions. December 8-9, Washington, DC
-
-
-
65
-
-
70349241725
-
Inflammatory phenotypes in adult asthma: clinical applications
-
10.1111/j.1752-699X.2009.00162.x, 20298405
-
Gibson PG. Inflammatory phenotypes in adult asthma: clinical applications. Clin Respir J 2009, 3:198-206. 10.1111/j.1752-699X.2009.00162.x, 20298405.
-
(2009)
Clin Respir J
, vol.3
, pp. 198-206
-
-
Gibson, P.G.1
-
66
-
-
33847055114
-
How to infer gene networks from expression profiles
-
1828749, 17299415
-
Bansal M, Belcastro V, Ambesi-Impiombato A, di Bernardo D. How to infer gene networks from expression profiles. Mol Syst Biol 2007, 3:78. 1828749, 17299415.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 78
-
-
Bansal, M.1
Belcastro, V.2
Ambesi-Impiombato, A.3
di Bernardo, D.4
-
67
-
-
77950910419
-
Revealing strengths and weaknesses of methods for gene network inference
-
10.1073/pnas.0913357107, 2851985, 20308593
-
Marbach D, Prill RJ, Schaffter T, Mattiussi C, Floreano D, Stolovitzky G. Revealing strengths and weaknesses of methods for gene network inference. Proc Natl Acad Sci USA 2010, 107:6286-6291. 10.1073/pnas.0913357107, 2851985, 20308593.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 6286-6291
-
-
Marbach, D.1
Prill, R.J.2
Schaffter, T.3
Mattiussi, C.4
Floreano, D.5
Stolovitzky, G.6
-
68
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
10.1089/106652700750050961, 11108481
-
Friedman N, Linial M, Nachman I, Pe'er D. Using Bayesian networks to analyze expression data. J Comput Biol 2000, 7:601-620. 10.1089/106652700750050961, 11108481.
-
(2000)
J Comput Biol
, vol.7
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
69
-
-
79952112313
-
Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks
-
10.1007/978-1-60761-854-6_23, 20827604
-
Luo W, Woolf PJ. Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks. Methods Mol Biol 2010, 674:401-418. 10.1007/978-1-60761-854-6_23, 20827604.
-
(2010)
Methods Mol Biol
, vol.674
, pp. 401-418
-
-
Luo, W.1
Woolf, P.J.2
-
70
-
-
67650258730
-
Disentangling molecular relationships with a causal inference test
-
3224661, 19473544
-
Millstein J, Zhang B, Zhu J, Schadt EE. Disentangling molecular relationships with a causal inference test. BMC Genet 2009, 10:23. 3224661, 19473544.
-
(2009)
BMC Genet
, vol.10
, pp. 23
-
-
Millstein, J.1
Zhang, B.2
Zhu, J.3
Schadt, E.E.4
-
71
-
-
79957872153
-
Inferring Boolean network structure via correlation
-
10.1093/bioinformatics/btr166, 21471013
-
Maucher M, Kracher B, Kuhl M, Kestler HA. Inferring Boolean network structure via correlation. Bioinformatics 2011, 27:1529-1536. 10.1093/bioinformatics/btr166, 21471013.
-
(2011)
Bioinformatics
, vol.27
, pp. 1529-1536
-
-
Maucher, M.1
Kracher, B.2
Kuhl, M.3
Kestler, H.A.4
-
72
-
-
6044247613
-
A Boolean algorithm for reconstructing the structure of regulatory networks
-
10.1016/j.ymben.2004.05.002, 15491862
-
Mehra S, Hu WS, Karypis G. A Boolean algorithm for reconstructing the structure of regulatory networks. Metab Eng 2004, 6:326-339. 10.1016/j.ymben.2004.05.002, 15491862.
-
(2004)
Metab Eng
, vol.6
, pp. 326-339
-
-
Mehra, S.1
Hu, W.S.2
Karypis, G.3
-
73
-
-
79951948526
-
A Boolean-based systems biology approach to predict novel genes associated with cancer: application to colorectal cancer
-
10.1186/1752-0509-5-35, 3051904, 21352556
-
Nagaraj SH, Reverter A. A Boolean-based systems biology approach to predict novel genes associated with cancer: application to colorectal cancer. BMC Syst Biol 2011, 5:35. 10.1186/1752-0509-5-35, 3051904, 21352556.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 35
-
-
Nagaraj, S.H.1
Reverter, A.2
-
74
-
-
78149461178
-
DREAM3: network inference using dynamic context likelihood of relatedness and the inferelator
-
10.1371/journal.pone.0009803, 2842436, 20339551
-
Madar A, Greenfield A, Vanden-Eijnden E, Bonneau R. DREAM3: network inference using dynamic context likelihood of relatedness and the inferelator. PLoS One 2010, 5:e9803. 10.1371/journal.pone.0009803, 2842436, 20339551.
-
(2010)
PLoS One
, vol.5
-
-
Madar, A.1
Greenfield, A.2
Vanden-Eijnden, E.3
Bonneau, R.4
-
75
-
-
33947305781
-
ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A. ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinforma 2006, 7(1):S7.
-
(2006)
BMC Bioinforma
, vol.7
, Issue.1
-
-
Margolin, A.A.1
Nemenman, I.2
Basso, K.3
Wiggins, C.4
Stolovitzky, G.5
Dalla Favera, R.6
Califano, A.7
-
76
-
-
36248999573
-
Information-theoretic inference of large transcriptional regulatory networks
-
Meyer PE, Kontos K, Lafitte F, Bontempi G. Information-theoretic inference of large transcriptional regulatory networks. EURASIP J Bioinform Syst Biol 2007, 2007:79879.
-
(2007)
EURASIP J Bioinform Syst Biol
, vol.2007
, pp. 79879
-
-
Meyer, P.E.1
Kontos, K.2
Lafitte, F.3
Bontempi, G.4
-
77
-
-
80052176477
-
Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data
-
Gao S, Wang X. Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data. BMC Bioinforma 2011, 12:359.
-
(2011)
BMC Bioinforma
, vol.12
, pp. 359
-
-
Gao, S.1
Wang, X.2
-
78
-
-
84864946487
-
Integrating external biological knowledge in the construction of regulatory networks from time-series expression data
-
10.1186/1752-0509-6-101, 3465231, 22898396
-
Lo K, Raftery AE, Dombek KM, Zhu J, Schadt EE, Bumgarner RE, Yeung KY. Integrating external biological knowledge in the construction of regulatory networks from time-series expression data. BMC Syst Biol 2012, 6:101. 10.1186/1752-0509-6-101, 3465231, 22898396.
-
(2012)
BMC Syst Biol
, vol.6
, pp. 101
-
-
Lo, K.1
Raftery, A.E.2
Dombek, K.M.3
Zhu, J.4
Schadt, E.E.5
Bumgarner, R.E.6
Yeung, K.Y.7
-
79
-
-
34247556038
-
Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations
-
10.1371/journal.pcbi.0030069, 1851982, 17432931
-
Zhu J, Wiener MC, Zhang C, Fridman A, Minch E, Lum PY, Sachs JR, Schadt EE. Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations. PLoS Comput Biol 2007, 3:e69. 10.1371/journal.pcbi.0030069, 1851982, 17432931.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Zhu, J.1
Wiener, M.C.2
Zhang, C.3
Fridman, A.4
Minch, E.5
Lum, P.Y.6
Sachs, J.R.7
Schadt, E.E.8
|