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Volumn 7, Issue 1, 2009, Pages 193-215

Clustering of gene expression data and end-point measurements by simulated annealing

Author keywords

Clustering; Gene expression; Microarray; Phenotype; Simulated annealing

Indexed keywords

LINOLEIC ACID; MITOGEN ACTIVATED PROTEIN KINASE; PARACETAMOL;

EID: 65449186592     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S021972000900400X     Document Type: Article
Times cited : (5)

References (27)
  • 2
    • 38149114028 scopus 로고    scopus 로고
    • Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes
    • Bushel PR, Wolfinger RD, Gibson G, Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes, BMC Syst Biol 1:15, 2007.
    • (2007) BMC Syst Biol , vol.1 , pp. 15
    • Bushel, P.R.1    Wolfinger, R.D.2    Gibson, G.3
  • 4
    • 13844255692 scopus 로고    scopus 로고
    • Genetic algorithms applied to multi-class clustering for gene expression data
    • Pan H, Zhu J, Han D, Genetic algorithms applied to multi-class clustering for gene expression data, Genomics Proteomics Bioinformatics 1:279-287, 2003.
    • (2003) Genomics Proteomics Bioinformatics , vol.1 , pp. 279-287
    • Pan, H.1    Zhu, J.2    Han, D.3
  • 9
    • 25844523365 scopus 로고    scopus 로고
    • Determination of cluster number in clustering microarray data
    • Shen J, Chang SI, Lee ES, Deng Y, Brown SJ, Determination of cluster number in clustering microarray data, Appl Math Comput 169 1172-1185, 2005.
    • (2005) Appl Math Comput , vol.169 , pp. 1172-1185
    • Shen, J.1    Chang, S.I.2    Lee, E.S.3    Deng, Y.4    Brown, S.J.5
  • 10
    • 0002410338 scopus 로고
    • Information, uncertainty, and the utility of categories
    • Gluck M, Corter J, Information, uncertainty, and the utility of categories, Proc 7th Ann Conf Cog Soc, pp. 283-287, 1985.
    • (1985) Proc 7th Ann Conf Cog Soc , pp. 283-287
    • Gluck, M.1    Corter, J.2
  • 11
    • 65449180851 scopus 로고    scopus 로고
    • Bushel PR, Clustering of mixed data types with application to toxicogenomics, Ph.D. Dissertation, North Carolina State University, Raleigh, 2005. http://www.lib.ncsu.edu/theses/available/ etd-03172005-091928/unrestricted/etd.pdf.
    • Bushel PR, Clustering of mixed data types with application to toxicogenomics, Ph.D. Dissertation, North Carolina State University, Raleigh, 2005. http://www.lib.ncsu.edu/theses/available/ etd-03172005-091928/unrestricted/etd.pdf.
  • 12
    • 0035024021 scopus 로고    scopus 로고
    • Validating clustering for gene expression data
    • Yeung KY, Haynor DR, Ruzzo WL, Validating clustering for gene expression data, Bioinformatics 17:309-318, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 309-318
    • Yeung, K.Y.1    Haynor, D.R.2    Ruzzo, W.L.3
  • 13
    • 3543054548 scopus 로고    scopus 로고
    • Evaluation and optimization of clustering in gene expression data analysis
    • Famili AF, Liu G, Liu Z, Evaluation and optimization of clustering in gene expression data analysis, Bioinformatics 20:1535-1545, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 1535-1545
    • Famili, A.F.1    Liu, G.2    Liu, Z.3
  • 15
    • 33847097211 scopus 로고    scopus 로고
    • Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data
    • Wang Z, Yan P, Potter D, Eng C, Huang TH, Lin S, Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data, BMC Bioinformatics 8:38, 2007.
    • (2007) BMC Bioinformatics , vol.8 , pp. 38
    • Wang, Z.1    Yan, P.2    Potter, D.3    Eng, C.4    Huang, T.H.5    Lin, S.6
  • 17
    • 31744434873 scopus 로고    scopus 로고
    • Clustering expressed genes on the basis of their association with a quantitative phenotype
    • Jia Z, Xu S, Clustering expressed genes on the basis of their association with a quantitative phenotype, Genet Res 86 193-207, 2005.
    • (2005) Genet Res , vol.86 , pp. 193-207
    • Jia, Z.1    Xu, S.2
  • 18
    • 33747891871 scopus 로고    scopus 로고
    • Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks
    • Gevaert O, De Smet F, Timmerman D, Moreau Y, De Moor B, Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks, Bioinformatics 22:e184-190, 2006.
    • (2006) Bioinformatics , vol.22
    • Gevaert, O.1    De Smet, F.2    Timmerman, D.3    Moreau, Y.4    De Moor, B.5
  • 19
    • 0018763569 scopus 로고
    • Acute paracetamol intoxication of starved mice leads to lipid peroxidation in vivo
    • Wendel A, Feuerstein S, Konz KH, Acute paracetamol intoxication of starved mice leads to lipid peroxidation in vivo, Biochem Pharmacol 28:2051-2055, 1979.
    • (1979) Biochem Pharmacol , vol.28 , pp. 2051-2055
    • Wendel, A.1    Feuerstein, S.2    Konz, K.H.3
  • 20
    • 0242363202 scopus 로고    scopus 로고
    • Role of lipid peroxidation as a mechanism of liver injury after acetaminophen overdose in mice
    • Knight TR, Fariss MW, Farhood A, Jaeschke H, Role of lipid peroxidation as a mechanism of liver injury after acetaminophen overdose in mice, Toxicol Sci 76:229-236, 2003.
    • (2003) Toxicol Sci , vol.76 , pp. 229-236
    • Knight, T.R.1    Fariss, M.W.2    Farhood, A.3    Jaeschke, H.4
  • 21
    • 0036330839 scopus 로고    scopus 로고
    • Effect of inhibitors of nitric oxide synthase on acetaminophen-induced hepatotoxicity in mice
    • Hinson JA, Bucci TJ, Irwin LK, Michael SL, Mayeux PR, Effect of inhibitors of nitric oxide synthase on acetaminophen-induced hepatotoxicity in mice, Nitric Oxide 6:160-167, 2002.
    • (2002) Nitric Oxide , vol.6 , pp. 160-167
    • Hinson, J.A.1    Bucci, T.J.2    Irwin, L.K.3    Michael, S.L.4    Mayeux, P.R.5
  • 22
    • 0038176487 scopus 로고    scopus 로고
    • Phenotypic anchoring: Linking cause and effect
    • Paules R, Phenotypic anchoring: Linking cause and effect, Environ Health Perspect 111:A338-339, 2003.
    • (2003) Environ Health Perspect , vol.111
    • Paules, R.1
  • 26
    • 2342423128 scopus 로고    scopus 로고
    • mdclust-exploratory microarray analysis by multidimensional clustering
    • Dugas M, Merk S, Breit S, Dirschedl P, mdclust-exploratory microarray analysis by multidimensional clustering, Bioinformatics 20 931-936, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 931-936
    • Dugas, M.1    Merk, S.2    Breit, S.3    Dirschedl, P.4
  • 27
    • 18144444239 scopus 로고    scopus 로고
    • Cluster-Rasch models for microarray gene expression data
    • RESEARCH0031
    • Li H, Hong F, Cluster-Rasch models for microarray gene expression data, Genome Biol 2:RESEARCH0031, 2001.
    • (2001) Genome Biol , vol.2
    • Li, H.1    Hong, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.