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Volumn 9783527410088, Issue , 2013, Pages 1-449

Molecular Excitation Dynamics and Relaxation: Quantum Theory and Spectroscopy

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CHARACTER RECOGNITION;

EID: 84886719716     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527653652     Document Type: Book
Times cited : (205)

References (190)
  • 18
    • 0000733386 scopus 로고
    • Coherent states: Theory and some applications
    • Fengt, D.H., Zhang, W.-M., and Gilmore, R. (1990) Coherent states: Theory and some applications. Rev. Mod. Phys., 62, 867-927.
    • (1990) Rev. Mod. Phys. , vol.62 , pp. 867-927
    • Fengt, D.H.1    Zhang, W.-M.2    Gilmore, R.3
  • 28
    • 4243610210 scopus 로고
    • Excitons in anisotropic solids: The model of fractionaldimensional space
    • He, X.F. (1991) Excitons in anisotropic solids: The model of fractionaldimensional space. Phys. Rev. B, 43, 2063.
    • (1991) Phys. Rev. B , vol.43 , pp. 2063
    • He, X.F.1
  • 31
    • 78449307030 scopus 로고    scopus 로고
    • Energy-transfer and chargeseparation pathways in the reaction center of photosystem II revealed by coherent two-dimensional optical spectroscopy
    • Abramavicius, D. and Mukamel, S. (2010) Energy-transfer and chargeseparation pathways in the reaction center of photosystem II revealed by coherent two-dimensional optical spectroscopy. J. Chem Phys, 133, 184501.
    • (2010) J. Chem Phys , vol.133 , pp. 184501
    • Abramavicius, D.1    Mukamel, S.2
  • 36
    • 36149025875 scopus 로고
    • "Relative state" formulation of quantum mechanics
    • Everett,H. (1957) "Relative state" formulation of quantum mechanics. Rev. Mod. Phys., 29, 454-462.
    • (1957) Rev. Mod. Phys. , vol.29 , pp. 454-462
    • Everett, H.1
  • 43
    • 77952706015 scopus 로고    scopus 로고
    • Vibrational wave packet induced oscillations in two-dimensional electronic spectra. II. Theory
    • Mančal, T. Nemeth, A., Milota, F., Lukeš, V., Kauffmann, H.F., and Sperling, J. (2010) Vibrational wave packet induced oscillations in two-dimensional electronic spectra. II. Theory. J. Chem. Phys., 132, 184515.
    • (2010) J. Chem. Phys. , vol.132 , pp. 184515
    • Mančal, T.1    Nemeth, A.2    Milota, F.3    Lukeš, V.4    Kauffmann, H.F.5    Sperling, J.6
  • 44
    • 43049171655 scopus 로고    scopus 로고
    • Detection of electronic and vibrational coherences in molecular systems by 2D electronic photon echo spectroscopy
    • Egorova, D. (2008) Detection of electronic and vibrational coherences in molecular systems by 2D electronic photon echo spectroscopy. Chem. Phys., 347, 166-176.
    • (2008) Chem. Phys. , vol.347 , pp. 166-176
    • Egorova, D.1
  • 45
    • 84883337660 scopus 로고    scopus 로고
    • Irreversibilities in quantum mechanics
    • Kluwer Academic, Dordrecht, London
    • Fain, B. (2000) Irreversibilities in quantum mechanics, in Fundamental Theories of Physics, Kluwer Academic, Dordrecht, London.
    • (2000) Fundamental Theories of Physics
    • Fain, B.1
  • 46
    • 43049157685 scopus 로고    scopus 로고
    • On the conundrum of deriving exact solutions from approximate master equations
    • Doll,R., Zueco, D.,Wubs, M.,Kohler, S., and Hanggi, P. (2008) On the conundrum of deriving exact solutions from approximate master equations. Chem. Phys., 347, 243-249.
    • (2008) Chem. Phys. , vol.347 , pp. 243-249
    • Doll, R.1    Zueco, D.2    Wubs, M.3    Kohler, S.4    Hanggi, P.5
  • 47
    • 4243419753 scopus 로고    scopus 로고
    • IoP - Institute of Physics Publishing, Bristol and Philadelphia
    • Chaichian, M. and Demichev, A. (2001) Path Integrals in Physics, vol. I and II, IoP - Institute of Physics Publishing, Bristol and Philadelphia.
    • (2001) Path Integrals in Physics , vol.1-2
    • Chaichian, M.1    Demichev, A.2
  • 48
    • 4444269588 scopus 로고
    • The theory of a general quantum system interacting with a linear dissipative system
    • Feynman, R.P. and Vernon, F.L. (1963) The theory of a general quantum system interacting with a linear dissipative system. Ann. Phys. (NY), 24, 118.
    • (1963) Ann. Phys. (NY) , vol.24 , pp. 118
    • Feynman, R.P.1    Vernon, F.L.2
  • 49
    • 33646972456 scopus 로고
    • Quantum Brownian motion: The functional integral approach
    • Grabert, H., Schramm, P., and Ingold, G.-L. (1988) Quantum Brownian motion: The functional integral approach. Phys. Rep., 168, 115-207.
    • (1988) Phys. Rep. , vol.168 , pp. 115-207
    • Grabert, H.1    Schramm, P.2    Ingold, G.-L.3
  • 50
    • 0041154589 scopus 로고    scopus 로고
    • The non-Markovian stochastic Schrödinger equation for open systems
    • Diosi, L. and Strunz, W.T. (1997) The non-Markovian stochastic Schrödinger equation for open systems. Phys. Lett. A, 235, 569-573.
    • (1997) Phys. Lett. A , vol.235 , pp. 569-573
    • Diosi, L.1    Strunz, W.T.2
  • 51
    • 0043016511 scopus 로고    scopus 로고
    • Linear quantum state diffusion for non-Markovian open quantum systems
    • Strunz, W.T. (1996) Linear quantum state diffusion for non-Markovian open quantum systems. Phys. Lett. A, 224, 25-30.
    • (1996) Phys. Lett. A , vol.224 , pp. 25-30
    • Strunz, W.T.1
  • 52
    • 5344261136 scopus 로고
    • Path integral methods in statistical mechanics
    • Wiegel, F.W. (1975) Path integral methods in statistical mechanics. Phys. Rep., 16(2), 57-114.
    • (1975) Phys. Rep. , vol.16 , Issue.2 , pp. 57-114
    • Wiegel, F.W.1
  • 53
    • 33847273841 scopus 로고    scopus 로고
    • Stochastic Liouville, Langevin, Fokker-Planck, and master equation approaches to quantum dissipative systems
    • Tanimura, Y. (2006) Stochastic Liouville, Langevin, Fokker-Planck, and master equation approaches to quantum dissipative systems. J. Phys. Soc. Jpn., 75, 082001.
    • (2006) J. Phys. Soc. Jpn. , vol.75 , pp. 082001
    • Tanimura, Y.1
  • 54
    • 67649132804 scopus 로고    scopus 로고
    • Unified treatment of quantum coherent and incoherent hopping dynamics in electronic energy transfer: Reduced hierarchy equation approach
    • Ishizaki, A. and Fleming, G.R. (2009) Unified treatment of quantum coherent and incoherent hopping dynamics in electronic energy transfer: Reduced hierarchy equation approach. J. Chem. Phys., 130(23), 234111.
    • (2009) J. Chem. Phys. , vol.130 , Issue.23 , pp. 234111
    • Ishizaki, A.1    Fleming, G.R.2
  • 55
    • 84855449717 scopus 로고    scopus 로고
    • Non-Markovian effects in time-resolved fluorescence spectrum of molecular aggregates: Tracing polaron formation
    • Gelzinis, A., Abramavicius, D., and Valkunas, L. (2011) Non-Markovian effects in time-resolved fluorescence spectrum of molecular aggregates: Tracing polaron formation. Phys. Rev. B, 84, 245430.
    • (2011) Phys. Rev. B , vol.84 , pp. 245430
    • Gelzinis, A.1    Abramavicius, D.2    Valkunas, L.3
  • 57
    • 47849124340 scopus 로고    scopus 로고
    • Electronic coherence transfer in photosynthetic complexes and its signatures in optical spectroscopy
    • Mančal, T., Valkunas, L., Read, E.L., Engel, G.S., Calhoun, T.R., and Fleming, G.R. (2008) Electronic coherence transfer in photosynthetic complexes and its signatures in optical spectroscopy. Spectroscopy, 22, 199-211.
    • (2008) Spectroscopy , vol.22 , pp. 199-211
    • Mančal, T.1    Valkunas, L.2    Read, E.L.3    Engel, G.S.4    Calhoun, T.R.5    Fleming, G.R.6
  • 59
    • 80051475095 scopus 로고    scopus 로고
    • Two-dimensional electronic spectroscopy and photosynthesis: Fundamentals and applications to photosynthetic light-harvesting
    • Schlau-Cohen, G.S., Ishizaki, A., and Fleming, R.G. (2011) Two-dimensional electronic spectroscopy and photosynthesis: Fundamentals and applications to photosynthetic light-harvesting. Chem. Phys., 386(1-3), 1-22.
    • (2011) Chem. Phys. , vol.386 , pp. 1-22
    • Schlau-Cohen, G.S.1    Ishizaki, A.2    Fleming, R.G.3
  • 60
    • 84856400347 scopus 로고    scopus 로고
    • Quantum coherence spectroscopy reveals complex dynamics in bacterial light-harvesting complex 2 (LH2)
    • Harel, E., and Gregory Engel, S. (2012) Quantum coherence spectroscopy reveals complex dynamics in bacterial light-harvesting complex 2 (LH2). Proc. Natl. Acad. Sci. USA, 109(3), 706-711.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , Issue.3 , pp. 706-711
    • Harel, E.1    Gregory Engel, S.2
  • 64
    • 34250185415 scopus 로고    scopus 로고
    • Coherence dynamics in photosynthesis: Protein protection of excitonic coherence
    • Lee, H., Cheng, Y.-C., and Fleming, G.R. (2007) Coherence dynamics in photosynthesis: Protein protection of excitonic coherence. Science, 316, 1462-1465.
    • (2007) Science , vol.316 , pp. 1462-1465
    • Lee, H.1    Cheng, Y.-C.2    Fleming, G.R.3
  • 66
    • 58449086151 scopus 로고    scopus 로고
    • Coherent intrachain energy migration in a conjugated polymer at room temperature
    • Collini, E. and Scholes, G.D. (2009) Coherent intrachain energy migration in a conjugated polymer at room temperature. Science, 323(5912), 369-373.
    • (2009) Science , vol.323 , Issue.5912 , pp. 369-373
    • Collini, E.1    Scholes, G.D.2
  • 67
    • 59649116876 scopus 로고    scopus 로고
    • Twodimensional electronic photon echoes of a double band J -aggregate: Quantum oscillatory motion versus exciton relaxation
    • Milota, F., Sperling, J., Nemeth, A., and Kauffmann, H.F. (2009) Twodimensional electronic photon echoes of a double band J -aggregate: Quantum oscillatory motion versus exciton relaxation. Chem. Phys., 357(1-3), 45-53.
    • (2009) Chem. Phys. , vol.357 , Issue.1-3 , pp. 45-53
    • Milota, F.1    Sperling, J.2    Nemeth, A.3    Kauffmann, H.F.4
  • 68
    • 70349287841 scopus 로고    scopus 로고
    • Highly efficient energy excitation transfer in light harvesting complexes: The fundamental role of noise-assisted transport
    • Caruso, F., Chin, A.W., Datta, A., Huelga, S.F., and Plenio, M.B. (2009) Highly efficient energy excitation transfer in light harvesting complexes: The fundamental role of noise-assisted transport. J. Chem. Phys., 131, 105106.
    • (2009) J. Chem. Phys. , vol.131 , pp. 105106
    • Caruso, F.1    Chin, A.W.2    Datta, A.3    Huelga, S.F.4    Plenio, M.B.5
  • 69
    • 67650838756 scopus 로고    scopus 로고
    • Role of quantum coherence and environmental fluctuations in chromophoric energy transport
    • Rebentrost, P., Mohseni, M., and Aspuru-Guzik, A. (2009) Role of quantum coherence and environmental fluctuations in chromophoric energy transport. J. Phys. Chem. B, 113, 9942-9947.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 9942-9947
    • Rebentrost, P.1    Mohseni, M.2    Aspuru-Guzik, A.3
  • 70
    • 77954698835 scopus 로고    scopus 로고
    • Quantum state tuning of energy transfer in a correlated environment
    • Fassioli, F., Nazir, A., and Olaya-Castro, A. (2010) Quantum state tuning of energy transfer in a correlated environment. J. Phys. Chem. Lett., 1, 2139-2143.
    • (2010) J. Phys. Chem. Lett. , vol.1 , pp. 2139-2143
    • Fassioli, F.1    Nazir, A.2    Olaya-Castro, A.3
  • 71
    • 77955079075 scopus 로고    scopus 로고
    • Quantum coherent biomolecular energy transfer with spatially correlated fluctuations
    • Nalbach, P., Eckel, J., and Thorwart, M. (2010) Quantum coherent biomolecular energy transfer with spatially correlated fluctuations. New. J. Phys., 12, 065043.
    • (2010) New. J. Phys. , vol.12 , pp. 065043
    • Nalbach, P.1    Eckel, J.2    Thorwart, M.3
  • 72
    • 79952087794 scopus 로고    scopus 로고
    • Focus of quantum effects and noise in biomolecules
    • Fleming, G.R., Huelga, S.F., and Plenio, M.B. (2010) Focus of quantum effects and noise in biomolecules. New. J. Phys., 12, 065002.
    • (2010) New. J. Phys. , vol.12 , pp. 065002
    • Fleming, G.R.1    Huelga, S.F.2    Plenio, M.B.3
  • 73
    • 77953134115 scopus 로고    scopus 로고
    • Quantum entanglement in photosynthetic light-harvesting complexes
    • Sarovar, M., Ishizaki, A., and Fleming, G.R. (2010) Quantum entanglement in photosynthetic light-harvesting complexes. Nat. Phys., 6, 462-467.
    • (2010) Nat. Phys. , vol.6 , pp. 462-467
    • Sarovar, M.1    Ishizaki, A.2    Fleming, G.R.3
  • 74
    • 0001913395 scopus 로고
    • On the theory of relaxation processes
    • Redfield, A.G. (1957) On the theory of relaxation processes. IBM J. Res. Dev., 1, 19-31.
    • (1957) IBM J. Res. Dev. , vol.1 , pp. 19-31
    • Redfield, A.G.1
  • 75
    • 0032495969 scopus 로고    scopus 로고
    • Excitonmigration and three-pulse femtosecond optical spectroscopies of photosynthetic antenna complexes
    • Zhang, W.M., Meier, T., Chernyak, V., and Mukamel, S. (1998) Excitonmigration and three-pulse femtosecond optical spectroscopies of photosynthetic antenna complexes. J. Chem. Phys., 108, 7763-7774.
    • (1998) J. Chem. Phys. , vol.108 , pp. 7763-7774
    • Zhang, W.M.1    Meier, T.2    Chernyak, V.3    Mukamel, S.4
  • 76
    • 0038216640 scopus 로고    scopus 로고
    • Influence of phonons on exciton transfer dynamics: comparison of the Redfield, Förster, and modified Redfield equations
    • Yang, M. and Fleming, G.R. (2002) Influence of phonons on exciton transfer dynamics: comparison of the Redfield, Förster, and modified Redfield equations. Chem. Phys., 282, 163-180.
    • (2002) Chem. Phys. , vol.282 , pp. 163-180
    • Yang, M.1    Fleming, G.R.2
  • 77
    • 0002993452 scopus 로고
    • Energy transfer, spectral diffusion and fluorescence of molecular aggregates: Brownian oscillator analysis
    • Mukamel, S. and Rupasov, V. (1995) Energy transfer, spectral diffusion and fluorescence of molecular aggregates: Brownian oscillator analysis. Chem. Phys. Lett., 242, 17-26.
    • (1995) Chem. Phys. Lett. , vol.242 , pp. 17-26
    • Mukamel, S.1    Rupasov, V.2
  • 78
    • 3543009193 scopus 로고
    • On the generators of quantum dynamical semigroups
    • Lindblad, G. (1976) On the generators of quantum dynamical semigroups. Commun. Math. Phys., 48, 119.
    • (1976) Commun. Math. Phys. , vol.48 , pp. 119
    • Lindblad, G.1
  • 79
    • 77955755934 scopus 로고    scopus 로고
    • Quantum oscillatory exciton migration in photosynthetic reaction centers
    • Abramavicius, D. and Mukamel, S. (2010) Quantum oscillatory exciton migration in photosynthetic reaction centers. J. Chem. Phys., 133, 064510.
    • (2010) J. Chem. Phys. , vol.133 , pp. 064510
    • Abramavicius, D.1    Mukamel, S.2
  • 80
    • 72049127002 scopus 로고    scopus 로고
    • Hierarchical quantum master equation with semiclassical drude dissipation
    • Xu, R.X., Tian, B.L., Xu, J., Shi, Q., and Yan, Y.J. (2009) Hierarchical quantum master equation with semiclassical drude dissipation. J. Chem. Phys., 131(21), 214111.
    • (2009) J. Chem. Phys. , vol.131 , Issue.21 , pp. 214111
    • Xu, R.X.1    Tian, B.L.2    Xu, J.3    Shi, Q.4    Yan, Y.J.5
  • 81
    • 79960188726 scopus 로고    scopus 로고
    • Padé spectrum decompositions of quantum distribution functions and optimal hierarchical equations of motion construction for quantum open systems
    • Hu, J., Luo,M., Jiang, F., Xu, R.-X., and Yan, Y.J. (2011) Padé spectrum decompositions of quantum distribution functions and optimal hierarchical equations of motion construction for quantum open systems. J. Chem. Phys., 134(24), 244106.
    • (2011) J. Chem. Phys. , vol.134 , Issue.24 , pp. 244106
    • Hu, J.1    Luo, M.2    Jiang, F.3    Xu, R.-X.4    Yan, Y.J.5
  • 82
    • 22944466393 scopus 로고    scopus 로고
    • Exact quantum master equation via the calculus on path integrals
    • Xu, R.-X., Cui, P., Li, X.-Q., Mo, Y., and Yan, Y.-J. (2005) Exact quantum master equation via the calculus on path integrals. J. Chem. Phys., 122, 041103.
    • (2005) J. Chem. Phys. , vol.122 , pp. 041103
    • Xu, R.-X.1    Cui, P.2    Li, X.-Q.3    Mo, Y.4    Yan, Y.-J.5
  • 83
    • 79955392476 scopus 로고    scopus 로고
    • Decoherence in weakly coupled excitonic complexes
    • Mančal, T., Balevičius, V., and Valkunas, L. (2011) Decoherence in weakly coupled excitonic complexes. J. Phys. Chem. A, 115(16), 3845-3858.
    • (2011) J. Phys. Chem. A , vol.115 , Issue.16 , pp. 3845-3858
    • Mančal, T.1    Balevičius, V.2    Valkunas, L.3
  • 84
    • 72449190567 scopus 로고    scopus 로고
    • Light harvesting complex II B850 excitation dynamics
    • Strumpfer, J. and Schulten, K. (2009) Light harvesting complex II B850 excitation dynamics. J. Chem. Phys., 131, 225101.
    • (2009) J. Chem. Phys. , vol.131 , pp. 225101
    • Strumpfer, J.1    Schulten, K.2
  • 85
    • 33947255952 scopus 로고    scopus 로고
    • Dynamics of quantum dissipation systems interacting with bosonic canonical bath: Hierarchical equations of motion approach
    • Xu, R.-X. and Yan, Y.-J. (2007) Dynamics of quantum dissipation systems interacting with bosonic canonical bath: Hierarchical equations of motion approach. Phys. Rev. E, 75, 031107.
    • (2007) Phys. Rev. E , vol.75 , pp. 031107
    • Xu, R.-X.1    Yan, Y.-J.2
  • 86
    • 77950100923 scopus 로고    scopus 로고
    • Semiclassical description of electronic excitation population transfer in a model photosynthetic system
    • Guohua, T. and Miller, W.H. (2010) Semiclassical description of electronic excitation population transfer in a model photosynthetic system. J. Phys. Chem. Lett., 1, 891-894.
    • (2010) J. Phys. Chem. Lett. , vol.1 , pp. 891-894
    • Guohua, T.1    Miller, W.H.2
  • 87
    • 84868008896 scopus 로고    scopus 로고
    • An efficient method to calculate excitation energy transfer in light-harvesting systems: Application to the Fenna-Matthews-Olson complex
    • Ritschel, G., Roden, J., Strunz, W.T., and Eisfeld, A. (2011) An efficient method to calculate excitation energy transfer in light-harvesting systems: Application to the Fenna-Matthews-Olson complex. New J. Phys., 13, 113034.
    • (2011) New J. Phys. , vol.13 , pp. 113034
    • Ritschel, G.1    Roden, J.2    Strunz, W.T.3    Eisfeld, A.4
  • 88
    • 79960208645 scopus 로고    scopus 로고
    • High-performance solution of hierarchical equations of motion for studying energy transfer in light-harvesting complexes
    • Kreisbeck, C., Kramer, T., Rodriguez,M., and Hein, B. (2011) High-performance solution of hierarchical equations of motion for studying energy transfer in light-harvesting complexes. J. Chem. Theory Comput., 7, 2166.
    • (2011) J. Chem. Theory Comput. , vol.7 , pp. 2166
    • Kreisbeck, C.1    Kramer, T.2    Rodriguez, M.3    Hein, B.4
  • 89
    • 77955157624 scopus 로고    scopus 로고
    • Efficient simulation of strong system-environment interactions
    • Prior, J., Chin, A.W., Huelga, S.F., and Plenio, M.B. (2010) Efficient simulation of strong system-environment interactions. Phys. Rev. Lett., 105, 050404.
    • (2010) Phys. Rev. Lett. , vol.105 , pp. 050404
    • Prior, J.1    Chin, A.W.2    Huelga, S.F.3    Plenio, M.B.4
  • 91
    • 67649261996 scopus 로고    scopus 로고
    • Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle, vs. supermolecule perspectives
    • Abramavicius, D., Palmieri, B., Voronine, D.V., Šanda, F., and Mukamel, S. (2009) Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle, vs. supermolecule perspectives. Chem. Rev., 109, 2350-2408.
    • (2009) Chem. Rev. , vol.109 , pp. 2350-2408
    • Abramavicius, D.1    Palmieri, B.2    Voronine, D.V.3    Šanda, F.4    Mukamel, S.5
  • 92
    • 33847185885 scopus 로고    scopus 로고
    • Analysis of cross peaks in two dimensional electronic photon-echo spectroscopy for simple models with vibrations and dissipation
    • Domcke, W. Egorova, D., Gelin, M. (2007) Analysis of cross peaks in two dimensional electronic photon-echo spectroscopy for simple models with vibrations and dissipation. J. Chem. Phys., 126, 074314.
    • (2007) J. Chem. Phys. , vol.126 , pp. 074314
    • Domcke, W.1    Egorova, D.2    Gelin, M.3
  • 93
    • 84863007571 scopus 로고    scopus 로고
    • Origin of long-lived coherences in light-harvesting complexes
    • Christensson, N., Kauffmann, H.F., Pullerits, T., and Mančal, T. (2012) Origin of long-lived coherences in light-harvesting complexes. J. Phys. Chem. B, 116(25), 7449-7454.
    • (2012) J. Phys. Chem. B , vol.116 , Issue.25 , pp. 7449-7454
    • Christensson, N.1    Kauffmann, H.F.2    Pullerits, T.3    Mančal, T.4
  • 94
    • 84865559563 scopus 로고    scopus 로고
    • Vibrational vs. electronic coherences in 2D spectrum of molecular systems
    • Butkus, V., Zigmantas, D., Valkunas, L., and Abramavicius, D. (2012) Vibrational vs. electronic coherences in 2D spectrum of molecular systems. Chem. Phys. Lett., 545, 40-43.
    • (2012) Chem. Phys. Lett. , vol.545 , pp. 40-43
    • Butkus, V.1    Zigmantas, D.2    Valkunas, L.3    Abramavicius, D.4
  • 95
    • 80055021923 scopus 로고    scopus 로고
    • Exciton transfer dynamics and quantumness of energy transfer in the Fenna-Matthews-Olson complex
    • Nalbach, P., Braun, D., and Thorwart,M. (2011) Exciton transfer dynamics and quantumness of energy transfer in the Fenna-Matthews-Olson complex. Phys. Rev. E, 84, 041926.
    • (2011) Phys. Rev. E , vol.84 , pp. 041926
    • Nalbach, P.1    Braun, D.2    Thorwart, M.3
  • 96
    • 42149112490 scopus 로고
    • Molecular, nematic and crystal states of 1,1-diethylcyaninechloride
    • Jelley, E.E. (1937) Molecular, nematic and crystal states of 1,1-diethylcyaninechloride. Nature, 139, 631.
    • (1937) Nature , vol.139 , pp. 631
    • Jelley, E.E.1
  • 97
    • 0002522889 scopus 로고
    • Über die Veränderlichkeit der Absorptionsspektren in Lösungen und die Nebenvalenzen als ihre Ursache
    • Scheibe, G. (1937) Über die Veränderlichkeit der Absorptionsspektren in Lösungen und die Nebenvalenzen als ihre Ursache. Angew. Chem., 50(11), 212-219.
    • (1937) Angew. Chem. , vol.50 , Issue.11 , pp. 212-219
    • Scheibe, G.1
  • 100
    • 2342514194 scopus 로고    scopus 로고
    • Many-body approaches for simulating coherent nonlinear spectroscopies of electronic and vibrational excitons
    • Mukamel, S. and Abramavicius, D. (2004) Many-body approaches for simulating coherent nonlinear spectroscopies of electronic and vibrational excitons. Chem. Rev., 104, 2073.
    • (2004) Chem. Rev. , vol.104 , pp. 2073
    • Mukamel, S.1    Abramavicius, D.2
  • 101
    • 79051471508 scopus 로고    scopus 로고
    • Transport and correlated fluctuations in the nonlinear optical response of excitons
    • Abramavicius, D., Valkunas, L., and Mukamel, S. (2007) Transport and correlated fluctuations in the nonlinear optical response of excitons. Europhys. Lett., 80, 17005.
    • (2007) Europhys. Lett. , vol.80 , pp. 17005
    • Abramavicius, D.1    Valkunas, L.2    Mukamel, S.3
  • 102
  • 104
    • 10844291598 scopus 로고    scopus 로고
    • Probing electronic coupling in excitonically coupled heterodimer complexes by two-color three-pulse photon echoes
    • Mančal, T. and Fleming, G.R. (2004) Probing electronic coupling in excitonically coupled heterodimer complexes by two-color three-pulse photon echoes. J. Chem. Phys., 121(21), 10556-10565.
    • (2004) J. Chem. Phys. , vol.121 , Issue.21 , pp. 10556-10565
    • Mančal, T.1    Fleming, G.R.2
  • 105
    • 47249090859 scopus 로고    scopus 로고
    • Double-quantum resonances and exciton-scattering in coherent 2D spectroscopy of photosynthetic complexes
    • Abramavicius, D., Voronine, D.V., and Mukamel, S. (2008) Double-quantum resonances and exciton-scattering in coherent 2D spectroscopy of photosynthetic complexes. Proc. Natl. Acad. Sci. USA, 105, 8525.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 8525
    • Abramavicius, D.1    Voronine, D.V.2    Mukamel, S.3
  • 106
    • 84939837968 scopus 로고    scopus 로고
    • Molecular vibrationsinduced quantum beats in twodimensional electronic spectroscopy
    • Butkus, V., Valkunas, L., and Abramavicius, D. (2012) Molecular vibrationsinduced quantum beats in twodimensional electronic spectroscopy. J. Chem. Phys., 137(4), 044513.
    • (2012) J. Chem. Phys. , vol.137 , Issue.4 , pp. 044513
    • Butkus, V.1    Valkunas, L.2    Abramavicius, D.3
  • 107
    • 77954213752 scopus 로고    scopus 로고
    • Manipulation of two-dimensional spectra of excitonically coupled molecules by narrow-bandwidth laser pulses
    • Abramavicius, D., Butkus, V., Bujokas, J., and Valkunas, L. (2010) Manipulation of two-dimensional spectra of excitonically coupled molecules by narrow-bandwidth laser pulses. Chem. Phys., 372, 22-32.
    • (2010) Chem. Phys. , vol.372 , pp. 22-32
    • Abramavicius, D.1    Butkus, V.2    Bujokas, J.3    Valkunas, L.4
  • 108
    • 33746439778 scopus 로고    scopus 로고
    • Two-dimensional electronic spectroscopy of an excitonically coupled dimer
    • Kjellberg, P., Brüggemann, B. and Pullerits, T. (2006) Two-dimensional electronic spectroscopy of an excitonically coupled dimer. Phys. Rev. B, 74(2), 024303.
    • (2006) Phys. Rev. B , vol.74 , Issue.2 , pp. 024303
    • Kjellberg, P.1    Brüggemann, B.2    Pullerits, T.3
  • 109
    • 77952706015 scopus 로고    scopus 로고
    • Vibrational wave packet induced oscillations in twodimensional electronic spectra. Experiments, I
    • Nemeth, A., Milota, F., Mancal, T., Lukes, V., Hauer, J., Kauffmann, H.F., and Sperling, J. (2010) Vibrational wave packet induced oscillations in twodimensional electronic spectra. Experiments, I. J. Chem. Phys., 132, 184514.
    • (2010) J. Chem. Phys. , vol.132 , pp. 184514
    • Nemeth, A.1    Milota, F.2    Mancal, T.3    Lukes, V.4    Hauer, J.5    Kauffmann, H.F.6    Sperling, J.7
  • 110
    • 79958222630 scopus 로고    scopus 로고
    • High frequency vibrational modulations in twodimensional electronic spectra and their resemblance to electronic coherence signatures
    • Christensson, N., Milota, F., Hauer, J., Sperling, J., Bixner, O., Nemeth, A., and Kauffmann, H.F. (2011) High frequency vibrational modulations in twodimensional electronic spectra and their resemblance to electronic coherence signatures. J. Phys. Chem. B, 115(18), 5383-5391.
    • (2011) J. Phys. Chem. B , vol.115 , Issue.18 , pp. 5383-5391
    • Christensson, N.1    Milota, F.2    Hauer, J.3    Sperling, J.4    Bixner, O.5    Nemeth, A.6    Kauffmann, H.F.7
  • 111
    • 0016766522 scopus 로고
    • Chlorophyll arrangement in a bacteriochlorophyll protein from Chlorobium limicola
    • Fenna, R.E. and Matthews, B.W. (1975) Chlorophyll arrangement in a bacteriochlorophyll protein from Chlorobium limicola. Nature, 258, 573-577.
    • (1975) Nature , vol.258 , pp. 573-577
    • Fenna, R.E.1    Matthews, B.W.2
  • 112
    • 0031583476 scopus 로고    scopus 로고
    • Crystal structure of the bacteriochlorophyll a protein from Chlorobium tepidum
    • Li, Y.-F., Zhou, W., Blankenship, R.E., and Allen, J.P. (1997) Crystal structure of the bacteriochlorophyll a protein from Chlorobium tepidum. J. Mol. Biol., 271, 456-471.
    • (1997) J. Mol. Biol. , vol.271 , pp. 456-471
    • Li, Y.-F.1    Zhou, W.2    Blankenship, R.E.3    Allen, J.P.4
  • 114
    • 0037235076 scopus 로고    scopus 로고
    • The structure of the FMO protein from chlorobium tepidum at 2.2Å resolution
    • Camara-Artigas, A., Blankenship, R., and Allen, J.P. (2003) The structure of the FMO protein from chlorobium tepidum at 2.2Å resolution. Photosynth. Res., 75, 49.
    • (2003) Photosynth. Res. , vol.75 , pp. 49
    • Camara-Artigas, A.1    Blankenship, R.2    Allen, J.P.3
  • 115
    • 0023042001 scopus 로고
    • Structure and X-ray amino acid sequence of a bacteriochlorophyll a protein from prosthecochloris aestuarii refined at 1.9 Å resolution
    • Tronrud, D.E., Schmid, M.F., and Matthews, B.W. (1986) Structure and X-ray amino acid sequence of a bacteriochlorophyll a protein from prosthecochloris aestuarii refined at 1.9 Å resolution. J. Mol. Biol., 188(3), 443-454.
    • (1986) J. Mol. Biol. , vol.188 , Issue.3 , pp. 443-454
    • Tronrud, D.E.1    Schmid, M.F.2    Matthews, B.W.3
  • 116
    • 33749521844 scopus 로고    scopus 로고
    • How proteins trigger excitation energy transfer in the FMO complex of green sulfur bacteria
    • Adolphs, J. and Renger, T. (2006) How proteins trigger excitation energy transfer in the FMO complex of green sulfur bacteria. Biophys. J., 91, 2778-2797.
    • (2006) Biophys. J. , vol.91 , pp. 2778-2797
    • Adolphs, J.1    Renger, T.2
  • 120
    • 79957449406 scopus 로고    scopus 로고
    • Exciton dynamics in chromophore aggregates with correlated environment fluctuations
    • Abramavicius, D. and Mukamel, S. (2011) Exciton dynamics in chromophore aggregates with correlated environment fluctuations. J. Chem. Phys, 134(17), 174504.
    • (2011) J. Chem. Phys , vol.134 , Issue.17 , pp. 174504
    • Abramavicius, D.1    Mukamel, S.2
  • 122
    • 33845698300 scopus 로고    scopus 로고
    • The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes
    • Cogdell, R.J., Gall, A., and Köhler, J. (2006) The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes. Q. Rev. Biophys., 39, 227-324.
    • (2006) Q. Rev. Biophys. , vol.39 , pp. 227-324
    • Cogdell, R.J.1    Gall, A.2    Köhler, J.3
  • 124
    • 0000121402 scopus 로고
    • Structure and function of antenna polypeptides and chlorophyll-protein complexes: Principles and variability
    • CRC, Boca Raton
    • Zuber, H. and Brunisholz, R.A. (1991) Structure and function of antenna polypeptides and chlorophyll-protein complexes: Principles and variability, in The Chlorophylls, CRC, Boca Raton.
    • (1991) The Chlorophylls
    • Zuber, H.1    Brunisholz, R.A.2
  • 126
    • 0037424652 scopus 로고    scopus 로고
    • The structure and thermal motion of the b800-850 LH2 complex from rps.acidophila at 2.0Å resolution and 100 K: New structural features and functionally relevant motions
    • Papiz, M.Z., Prince, S.M., Howard, T., Cogdell, R.J., and Isaacs, N.W. (2003) The structure and thermal motion of the b800-850 LH2 complex from rps.acidophila at 2.0Å resolution and 100 K: New structural features and functionally relevant motions. J. Mol. Biol., 326, 1523.
    • (2003) J. Mol. Biol. , vol.326 , pp. 1523
    • Papiz, M.Z.1    Prince, S.M.2    Howard, T.3    Cogdell, R.J.4    Isaacs, N.W.5
  • 128
    • 33845698300 scopus 로고    scopus 로고
    • The architecture and function of the light-harvesting apparatus of purple bacteria: From single molecules to in vivo membranes
    • Cogdell, R.J., Gall, A., and Köhler, J. (2006) The architecture and function of the light-harvesting apparatus of purple bacteria: From single molecules to in vivo membranes. Q. Rev. Biophys., 39, 227.
    • (2006) Q. Rev. Biophys. , vol.39 , pp. 227
    • Cogdell, R.J.1    Gall, A.2    Köhler, J.3
  • 129
    • 84863836582 scopus 로고    scopus 로고
    • Insight into the structure of photosynthetic LH2 aggregate from spectroscopy simulations
    • Rancova, O., Sulskus, J., and Abramavicius, D. (2012) Insight into the structure of photosynthetic LH2 aggregate from spectroscopy simulations. J. Phys. Chem. B, 116(27), 7803-7814.
    • (2012) J. Phys. Chem. B , vol.116 , Issue.27 , pp. 7803-7814
    • Rancova, O.1    Sulskus, J.2    Abramavicius, D.3
  • 130
    • 0035976020 scopus 로고    scopus 로고
    • Energy transfer and trapping in photosystem I
    • Gobets, B. and van Grondelle, R. (2001) Energy transfer and trapping in photosystem I. Biochim. Biophys. Acta, 1507, 80-99.
    • (2001) Biochim. Biophys. Acta , vol.1507 , pp. 80-99
    • Gobets, B.1    van Grondelle, R.2
  • 131
    • 0030473144 scopus 로고    scopus 로고
    • A comparative fluorescence kinetics study of photosystem I monomers and trimers from Synechocystis PCC 6803
    • Turconi, S., Kruip, J., Schweitzer, G., Rögner, M., and Holzwarth, A.R. (1996) A comparative fluorescence kinetics study of photosystem I monomers and trimers from Synechocystis PCC 6803. Photosynth. Res., 49, 263-268.
    • (1996) Photosynth. Res. , vol.49 , pp. 263-268
    • Turconi, S.1    Kruip, J.2    Schweitzer, G.3    Rögner, M.4    Holzwarth, A.R.5
  • 132
    • 0035927420 scopus 로고    scopus 로고
    • Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution
    • Jordan, P., Fromme, P., Witt, H.T., Klukas, O., Saenger, W., and Kraus, N. (2001) Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution. Nature, 411, 909-917.
    • (2001) Nature , vol.411 , pp. 909-917
    • Jordan, P.1    Fromme, P.2    Witt, H.T.3    Klukas, O.4    Saenger, W.5    Kraus, N.6
  • 133
    • 0037104747 scopus 로고    scopus 로고
    • Robustness and optimality of light harvesting in cyanobacterial photosystem I
    • Sener, M.K., Lu, D., Ritz, T., Park, S., Fromme, P., and Schulten, K. (2002) Robustness and optimality of light harvesting in cyanobacterial photosystem I. J. Phys. Chem. B, 106, 7948-7960.
    • (2002) J. Phys. Chem. B , vol.106 , pp. 7948-7960
    • Sener, M.K.1    Lu, D.2    Ritz, T.3    Park, S.4    Fromme, P.5    Schulten, K.6
  • 134
    • 3042801997 scopus 로고    scopus 로고
    • Unraveling the photosystem I reaction center: A history, or the sum of many efforts
    • Fromme, P. and Mathis, P. (2004) Unraveling the photosystem I reaction center: A history, or the sum of many efforts. Photosynth. Res., 80, 109-124.
    • (2004) Photosynth. Res. , vol.80 , pp. 109-124
    • Fromme, P.1    Mathis, P.2
  • 135
    • 25444505320 scopus 로고    scopus 로고
    • Red chlorophylls in the exciton model of photosystem I
    • Vaitekonis, S., Trinkunas, G., and Valkunas, L. (2005) Red chlorophylls in the exciton model of photosystem I. Photosynth. Res., 86, 185-201.
    • (2005) Photosynth. Res. , vol.86 , pp. 185-201
    • Vaitekonis, S.1    Trinkunas, G.2    Valkunas, L.3
  • 136
    • 0036286172 scopus 로고    scopus 로고
    • Light harvesting in photosystem I: Model based on the 2.5 Å structure of photosystem I from Synechococcus elongatus
    • Byrdin, M., Jordan, P., Krauss, N., Fromme, P., Stehlik, D., and Schlodder, E. (2002) Light harvesting in photosystem I: Model based on the 2.5 Å structure of photosystem I from Synechococcus elongatus. Biophys. J., 83, 433-457.
    • (2002) Biophys. J. , vol.83 , pp. 433-457
    • Byrdin, M.1    Jordan, P.2    Krauss, N.3    Fromme, P.4    Stehlik, D.5    Schlodder, E.6
  • 137
    • 33846337814 scopus 로고    scopus 로고
    • One- and twocolor photon echo peak shift studies of photosystem I
    • Vaswani,H.M., Stenger, J., Fromme, P., and Fleming, G.R. (2006) One- and twocolor photon echo peak shift studies of photosystem I. J. Phys. Chem. B, 110, 26303-26312.
    • (2006) J. Phys. Chem. B , vol.110 , pp. 26303-26312
    • Vaswani, H.M.1    Stenger, J.2    Fromme, P.3    Fleming, G.R.4
  • 138
    • 0000451371 scopus 로고    scopus 로고
    • Ultrafast excitation energy transfer dynamics in photosynthetic pigment-protein complexes
    • Renger, T., May, V., and Kühn, O. (2001) Ultrafast excitation energy transfer dynamics in photosynthetic pigment-protein complexes. Phys. Rep., 343, 137-254.
    • (2001) Phys. Rep. , vol.343 , pp. 137-254
    • Renger, T.1    May, V.2    Kühn, O.3
  • 139
    • 0037015749 scopus 로고    scopus 로고
    • Chlorophyll excitations in photosystem I of Synechococus elongatus
    • Damjanovic, A., Vaswani, H.M., Fromme, P., and Fleming, G.R. (2002) Chlorophyll excitations in photosystem I of Synechococus elongatus. J. Phys. Chem. B, 106, 10251-10262.
    • (2002) J. Phys. Chem. B , vol.106 , pp. 10251-10262
    • Damjanovic, A.1    Vaswani, H.M.2    Fromme, P.3    Fleming, G.R.4
  • 140
    • 0038538307 scopus 로고    scopus 로고
    • Energy transfer in photosystem I of cyanobacteria Synechococcus elongatus: Model study with structure-based semiempirical hamiltonian and experimental spectral density
    • Yang, M., Damjanovic, A., Vaswani, H.M., and Fleming, G.R. (2003) Energy transfer in photosystem I of cyanobacteria Synechococcus elongatus: Model study with structure-based semiempirical hamiltonian and experimental spectral density. Biophys. J., 85, 140-158.
    • (2003) Biophys. J. , vol.85 , pp. 140-158
    • Yang, M.1    Damjanovic, A.2    Vaswani, H.M.3    Fleming, G.R.4
  • 141
    • 4444249605 scopus 로고    scopus 로고
    • From structure to dynamics: Modeling exciton dynamics in the photosynthetic antenna PS1888
    • Brüggemann, B., Sznee, K., Novoderezhkin, V., van Grondelle, R., and May, V. (2004) From structure to dynamics: Modeling exciton dynamics in the photosynthetic antenna PS1888. J. Phys. Chem. B, 108, 13536-13546.
    • (2004) J. Phys. Chem. B , vol.108 , pp. 13536-13546
    • Brüggemann, B.1    Sznee, K.2    Novoderezhkin, V.3    van Grondelle, R.4    May, V.5
  • 142
    • 57849146011 scopus 로고    scopus 로고
    • Photosystem II: The machinery of photosynthetic water splitting
    • Renger, G. and Renger, T. (2008) Photosystem II: The machinery of photosynthetic water splitting. Photosynth. Res., 98, 53-80.
    • (2008) Photosynth. Res. , vol.98 , pp. 53-80
    • Renger, G.1    Renger, T.2
  • 143
    • 62049085169 scopus 로고    scopus 로고
    • Cyanobacterial photosystem II at 2.9Å resolution and the role of quinones, lipids, channels and chloride
    • Guskov, A., Kern, J., Gabdulkhakov, A., Broser. M., Zouni, A., and Saenger,W. (2009) Cyanobacterial photosystem II at 2.9Å resolution and the role of quinones, lipids, channels and chloride. Nat. Struct. Molec. Biol., 16, 334-342.
    • (2009) Nat. Struct. Molec. Biol. , vol.16 , pp. 334-342
    • Guskov, A.1    Kern, J.2    Gabdulkhakov, A.3    Broser, M.4    Zouni, A.5    Saenger, W.6
  • 144
    • 21244494763 scopus 로고    scopus 로고
    • Theory of optical spectra of photosystem II reaction centers: Location of the triplet state and the identity of the primary electron donor
    • Raszewski, G., Saenger, W., and Renger, T. (2005) Theory of optical spectra of photosystem II reaction centers: Location of the triplet state and the identity of the primary electron donor. Biophys. J., 88(2), 986-998.
    • (2005) Biophys. J. , vol.88 , Issue.2 , pp. 986-998
    • Raszewski, G.1    Saenger, W.2    Renger, T.3
  • 145
    • 40549136513 scopus 로고    scopus 로고
    • Spectroscopic properties of reaction center pigments in photosystem II core complexes: Revision of the multimer model
    • Raszewski, G., Diner, B.A., Schlodder, E., and Renger, T. (2008) Spectroscopic properties of reaction center pigments in photosystem II core complexes: Revision of the multimer model. Biophys. J., 95, 105-119.
    • (2008) Biophys. J. , vol.95 , pp. 105-119
    • Raszewski, G.1    Diner, B.A.2    Schlodder, E.3    Renger, T.4
  • 146
    • 34548210433 scopus 로고    scopus 로고
    • Mixing of exciton and chargetransfer states in photosystem II reaction centers: Modeling of stark spectra with modified redfield theory
    • Novoderezhkin, V., Dekker, J.P., van Amerongen, H., and van Grondelle, R. (2007) Mixing of exciton and chargetransfer states in photosystem II reaction centers: Modeling of stark spectra with modified redfield theory. Biophys. J., 93, 1293-1311.
    • (2007) Biophys. J. , vol.93 , pp. 1293-1311
    • Novoderezhkin, V.1    Dekker, J.P.2    van Amerongen, H.3    van Grondelle, R.4
  • 147
    • 24144455262 scopus 로고    scopus 로고
    • Pathways and timescales of primary charge separation in the photosystem II reaction center as revealed by a simultaneous fit of time-resolved fluorescence and transient absorption
    • Novoderezhkin, V., Andrizhiyevskaya, E., Dekker, J.P., and van Grondelle, R. (2005) Pathways and timescales of primary charge separation in the photosystem II reaction center as revealed by a simultaneous fit of time-resolved fluorescence and transient absorption. Biophys. J., 89, 1464-1481.
    • (2005) Biophys. J. , vol.89 , pp. 1464-1481
    • Novoderezhkin, V.1    Andrizhiyevskaya, E.2    Dekker, J.P.3    van Grondelle, R.4
  • 148
    • 77957916749 scopus 로고    scopus 로고
    • Two-dimensional electronic spectroscopy of the D1-D2-cyt b559 photosystem II reaction center complex
    • Myers, J.A., Lewis, K.L.M., Fuller, F.D., Tekavec, P.F., Yocum, C.F., and Ogilvie, J.P. (2010) Two-dimensional electronic spectroscopy of the D1-D2-cyt b559 photosystem II reaction center complex. J. Phys. Chem. Lett., 1(19), 2774-2780.
    • (2010) J. Phys. Chem. Lett. , vol.1 , Issue.19 , pp. 2774-2780
    • Myers, J.A.1    Lewis, K.L.M.2    Fuller, F.D.3    Tekavec, P.F.4    Yocum, C.F.5    Ogilvie, J.P.6
  • 150
    • 43649102737 scopus 로고    scopus 로고
    • Unraveling coher ent dynamics and energy dissipation in photosynthetic complexes by 2D spectroscopy
    • Abramavicius, D., Voronine, D.V., and Mukamel, S. (2008) Unraveling coher ent dynamics and energy dissipation in photosynthetic complexes by 2D spectroscopy. Biophys. J., 94, 3613-3619.
    • (2008) Biophys. J. , vol.94 , pp. 3613-3619
    • Abramavicius, D.1    Voronine, D.V.2    Mukamel, S.3
  • 152
    • 76249103854 scopus 로고    scopus 로고
    • Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature
    • Collini, E., Wong, C.Y., Wilk, K.E., Curmi, P.M.G., Brumer, P., and Scholes, G.D. (2010) Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature. Nature, 463, 644-647.
    • (2010) Nature , vol.463 , pp. 644-647
    • Collini, E.1    Wong, C.Y.2    Wilk, K.E.3    Curmi, P.M.G.4    Brumer, P.5    Scholes, G.D.6
  • 153
    • 77952706015 scopus 로고    scopus 로고
    • Vibrational wave packet induced oscillations in twodimensional electronic spectra. I. Experiments
    • Nemeth, A., Milota, F., Mančal, T., Luke, V., Hauer, J., Kauffmann, H.F., and Sperling, J. (2010) Vibrational wave packet induced oscillations in twodimensional electronic spectra. I. Experiments. J. Chem. Phys., 132, 184514.
    • (2010) J. Chem. Phys. , vol.132 , pp. 184514
    • Nemeth, A.1    Milota, F.2    Mančal, T.3    Luke, V.4    Hauer, J.5    Kauffmann, H.F.6    Sperling, J.7
  • 154
    • 58149314259 scopus 로고    scopus 로고
    • Chirality-based signatures of local protein environments of photosynthetic complexes of green sulfur bacteria. simulation study
    • Voronine, D.V., Abramavicius, D., and Mukamel, S. (2008) Chirality-based signatures of local protein environments of photosynthetic complexes of green sulfur bacteria. simulation study. Biophys. J., 95, 4896-4907.
    • (2008) Biophys. J. , vol.95 , pp. 4896-4907
    • Voronine, D.V.1    Abramavicius, D.2    Mukamel, S.3
  • 155
    • 66349109658 scopus 로고    scopus 로고
    • Exciton delocalization and transport in photosystem I of cyanobacteria synechococcus elongates: Simulation study of coherent two-dimensional optical signals
    • Abramavicius, D. and Mukamel, S. (2009) Exciton delocalization and transport in photosystem I of cyanobacteria synechococcus elongates: Simulation study of coherent two-dimensional optical signals. J. Phys. Chem. B, 113, 6097-6108.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 6097-6108
    • Abramavicius, D.1    Mukamel, S.2
  • 156
    • 21244494763 scopus 로고    scopus 로고
    • Theory of optical spectra of photosystem II reaction centers: Location of the triplet state and the identity of the primary electron donor
    • Raszweski, G., Saenger, W., and Renger, T. (2005) Theory of optical spectra of photosystem II reaction centers: Location of the triplet state and the identity of the primary electron donor. Biophys. J., 88, 986-998.
    • (2005) Biophys. J. , vol.88 , pp. 986-998
    • Raszweski, G.1    Saenger, W.2    Renger, T.3
  • 157
    • 66749104376 scopus 로고    scopus 로고
    • Lindblad equations for strongly coupled populations and coherences in photosynthetic complexes
    • Palmieri, B., Abramavicius, D., and Mukamel, S. (2009) Lindblad equations for strongly coupled populations and coherences in photosynthetic complexes. J. Chem. Phys., 130, 204512.
    • (2009) J. Chem. Phys. , vol.130 , pp. 204512
    • Palmieri, B.1    Abramavicius, D.2    Mukamel, S.3
  • 158
    • 4244084400 scopus 로고
    • Optical detection and spectroscopy of single molecules in a solid
    • Moerner,W.E. and Kador, L. (1989) Optical detection and spectroscopy of single molecules in a solid. Phys. Rev. Lett., 62(21), 2535-2538.
    • (1989) Phys. Rev. Lett. , vol.62 , Issue.21 , pp. 2535-2538
    • Moerner, W.E.1    Kador, L.2
  • 159
    • 0028762166 scopus 로고
    • Singlemolecule detection and photochemistry on a surface using near-field opticalexcitation
    • Ambrose, W.P., Goodwin, P.M., Martin, J.C., and Keller, R.A. (1994) Singlemolecule detection and photochemistry on a surface using near-field opticalexcitation. Phys. Rev. Lett., 72(1), 160-163.
    • (1994) Phys. Rev. Lett. , vol.72 , Issue.1 , pp. 160-163
    • Ambrose, W.P.1    Goodwin, P.M.2    Martin, J.C.3    Keller, R.A.4
  • 160
    • 0028137085 scopus 로고
    • Probing single-molecule dynamics
    • Xie, X.S. and Dunn, R.C. (1994) Probing single-molecule dynamics. Science, 265(5170), 361-364.
    • (1994) Science , vol.265 , Issue.5170 , pp. 361-364
    • Xie, X.S.1    Dunn, R.C.2
  • 162
    • 0030832226 scopus 로고    scopus 로고
    • On/off blinking and switching behaviour of single molecules of green fluorescent protein
    • Dickson, R.M., Cubitt, A.B., Tsien, R.Y., and Moerner, W.E. (1997) On/off blinking and switching behaviour of single molecules of green fluorescent protein. Nature, 388(6640), 355-358.
    • (1997) Nature , vol.388 , Issue.6640 , pp. 355-358
    • Dickson, R.M.1    Cubitt, A.B.2    Tsien, R.Y.3    Moerner, W.E.4
  • 163
    • 0030886552 scopus 로고    scopus 로고
    • Fluorescence and photobleaching dynamics of single light-harvesting complexes
    • Bopp, M.A., Jia, Y.W., Li, L.Q., Cogdell, R.J., and Hochstrasser, R.M. (1997) Fluorescence and photobleaching dynamics of single light-harvesting complexes. Proc. Natl. Acad. Sci. USA, 94(20), 10630-10635.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , Issue.20 , pp. 10630-10635
    • Bopp, M.A.1    Jia, Y.W.2    Li, L.Q.3    Cogdell, R.J.4    Hochstrasser, R.M.5
  • 164
    • 79958204385 scopus 로고    scopus 로고
    • Fluorescence intermittency from the main plant lightharvesting complex: Resolving shifts between intensity levels
    • Krüger, T.P.J., Ilioaia, C., and van Grondelle, R. (2011) Fluorescence intermittency from the main plant lightharvesting complex: Resolving shifts between intensity levels. J. Phys. Chem. B, 115(18), 5071-5082.
    • (2011) J. Phys. Chem. B , vol.115 , Issue.18 , pp. 5071-5082
    • Krüger, T.P.J.1    Ilioaia, C.2    van Grondelle, R.3
  • 165
    • 79958209729 scopus 로고    scopus 로고
    • Fluorescence intermittency from themain plant light-harvesting complex: Sensitivity to the local environment
    • Krüger, T.P.J., Ilioaia, C., Valkunas, L., and van Grondelle, R. (2011) Fluorescence intermittency from themain plant light-harvesting complex: Sensitivity to the local environment. J. Phys. Chem. B, 115(18), 5083-5095.
    • (2011) J. Phys. Chem. B , vol.115 , Issue.18 , pp. 5083-5095
    • Krüger, T.P.J.1    Ilioaia, C.2    Valkunas, L.3    van Grondelle, R.4
  • 166
    • 0034052967 scopus 로고    scopus 로고
    • Spectroscopy of individual lightharvesting 2 complexes of Rhodopseudomonas acidophila: Diagonal disorder, intercomplex heterogeneity, spectral diffusion and energy transfer in B800 band
    • van Oijen, A.M., Ketelaars, M., Köhler, J., Aartsma, T.J., and Schmidt, J. (2000) Spectroscopy of individual lightharvesting 2 complexes of Rhodopseudomonas acidophila: Diagonal disorder, intercomplex heterogeneity, spectral diffusion and energy transfer in B800 band. Biophys. J., 78, 1570-1577.
    • (2000) Biophys. J. , vol.78 , pp. 1570-1577
    • van Oijen, A.M.1    Ketelaars, M.2    Köhler, J.3    Aartsma, T.J.4    Schmidt, J.5
  • 167
    • 0346103676 scopus 로고    scopus 로고
    • Direct observation of tiers in the energy landscape of a chromoprotein: A single-molecule study
    • Hofmann, C., Aartsma, T.J., Michel, H., and Köhler, J (2003) Direct observation of tiers in the energy landscape of a chromoprotein: A single-molecule study. Proc. Natl. Acad. Sci. USA, 100(26), 15534-15538.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.26 , pp. 15534-15538
    • Hofmann, C.1    Aartsma, T.J.2    Michel, H.3    Köhler, J.4
  • 168
    • 11244296662 scopus 로고    scopus 로고
    • Fluorescence spectral fluctuations of single LH2 complexes from Rhodopseudomonas acidophila strain 10050
    • PMID: 15078088
    • Rutkauskas, D., Novoderezhkin, V., Cogdell, R.J., and van Grondelle, R. (2004) Fluorescence spectral fluctuations of single LH2 complexes from Rhodopseudomonas acidophila strain 10050. Biochemistry, 43(15), 4431-4438, PMID: 15078088.
    • (2004) Biochemistry , vol.43 , Issue.15 , pp. 4431-4438
    • Rutkauskas, D.1    Novoderezhkin, V.2    Cogdell, R.J.3    van Grondelle, R.4
  • 169
    • 34248590878 scopus 로고    scopus 로고
    • Protein dynamics revealed in the excitonic spectra of single LH2 complexes
    • Valkunas, L., Janusonis, J., Rutkauskas, D., and van Grondelle, R. (2007) Protein dynamics revealed in the excitonic spectra of single LH2 complexes. J. Lumin., 127(1), 269-275.
    • (2007) J. Lumin. , vol.127 , Issue.1 , pp. 269-275
    • Valkunas, L.1    Janusonis, J.2    Rutkauskas, D.3    van Grondelle, R.4
  • 170
    • 38949212729 scopus 로고    scopus 로고
    • Spectral dynamics of individual bacterial light-harvesting complexes: alternative disorder model
    • Janusonis, J., Valkunas, R.L., Rutkauskas, D., and van Grondelle, R. (2008) Spectral dynamics of individual bacterial light-harvesting complexes: alternative disorder model. Biophys. J., 94, 1348-1358.
    • (2008) Biophys. J. , vol.94 , pp. 1348-1358
    • Janusonis, J.1    Valkunas, R.L.2    Rutkauskas, D.3    van Grondelle, R.4
  • 171
    • 0033548686 scopus 로고    scopus 로고
    • Fluorescence spectroscopy of single biomolecules
    • Weiss, S. (1999) Fluorescence spectroscopy of single biomolecules. Science, 283(5408), 1676-1683.
    • (1999) Science , vol.283 , Issue.5408 , pp. 1676-1683
    • Weiss, S.1
  • 172
    • 50649121477 scopus 로고    scopus 로고
    • Advances in single-molecule fluorescence methods for molecular biology
    • Joo, C., Balci, H., Ishitsuka, Y., Buranachai, C., and Ha, T. (2008) Advances in single-molecule fluorescence methods for molecular biology. Ann. Rev. Biochem., 77(1), 51-76.
    • (2008) Ann. Rev. Biochem. , vol.77 , Issue.1 , pp. 51-76
    • Joo, C.1    Balci, H.2    Ishitsuka, Y.3    Buranachai, C.4    Ha, T.5
  • 173
    • 0038558207 scopus 로고    scopus 로고
    • Modeling distributed kinetics in isolated semiconductor quantum dots
    • Kuno, M., Fromm, D.P., Johnson, S.T., Gallagher, A., and Nesbitt, D.J. (2003) Modeling distributed kinetics in isolated semiconductor quantum dots. Phys. Rev. B, 67(12), 125304.
    • (2003) Phys. Rev. B , vol.67 , Issue.12 , pp. 125304
    • Kuno, M.1    Fromm, D.P.2    Johnson, S.T.3    Gallagher, A.4    Nesbitt, D.J.5
  • 175
    • 0028797617 scopus 로고
    • Direct spectroscopic observation of quantum jumps of a single-molecule
    • Basche, T., Kummer, S., and Brauchle, C. (1995) Direct spectroscopic observation of quantum jumps of a single-molecule. Nature, 373(6510), 132-134.
    • (1995) Nature , vol.373 , Issue.6510 , pp. 132-134
    • Basche, T.1    Kummer, S.2    Brauchle, C.3
  • 176
    • 59749105954 scopus 로고    scopus 로고
    • Beyond quantum jumps: Blinking nanoscale light emitters
    • Stefani, F.D., Hoogenboom, J.P., and Barkai, E. (2009) Beyond quantum jumps: Blinking nanoscale light emitters. Phys. Today, 62(2), 34-39.
    • (2009) Phys. Today , vol.62 , Issue.2 , pp. 34-39
    • Stefani, F.D.1    Hoogenboom, J.P.2    Barkai, E.3
  • 177
    • 11244333200 scopus 로고    scopus 로고
    • Relationship between single quantum-dot intermittency and fluorescence intensity decays from collections of dots
    • Chung, I. and Moungi Bawendi, G. (2004) Relationship between single quantum-dot intermittency and fluorescence intensity decays from collections of dots. Phys. Rev. B, 70, 165304.
    • (2004) Phys. Rev. B , vol.70 , pp. 165304
    • Chung, I.1    Moungi Bawendi, G.2
  • 178
    • 0001618724 scopus 로고    scopus 로고
    • Nonexponential "blinking" kinetics of single cdse quantum dots: A universal power law behavior
    • Kuno, M., Fromm, D.P., Hamann, H.F., Gallagher, A., and Nesbitt, D.J. (2000) Nonexponential "blinking" kinetics of single cdse quantum dots: A universal power law behavior. J. Chem. Phys., 112(7), 3117-3120.
    • (2000) J. Chem. Phys. , vol.112 , Issue.7 , pp. 3117-3120
    • Kuno, M.1    Fromm, D.P.2    Hamann, H.F.3    Gallagher, A.4    Nesbitt, D.J.5
  • 179
    • 0037116187 scopus 로고    scopus 로고
    • Simple model for the power-law blinking of single semiconductor nanocrystals
    • Verberk, R., van Oijen, A.M., and Orrit, M. (2002) Simple model for the power-law blinking of single semiconductor nanocrystals. Phys. Rev. B, 66(23), 233202.
    • (2002) Phys. Rev. B , vol.66 , Issue.23 , pp. 233202
    • Verberk, R.1    van Oijen, A.M.2    Orrit, M.3
  • 180
    • 27144559157 scopus 로고    scopus 로고
    • Diffusion-controlled electron transfer processes and power-law statistics of fluorescence intermittency of nanoparticles
    • Tang, J. and Marcus, R.A. (2005) Diffusion-controlled electron transfer processes and power-law statistics of fluorescence intermittency of nanoparticles. Phys. Rev. Lett., 95, 107401.
    • (2005) Phys. Rev. Lett. , vol.95 , pp. 107401
    • Tang, J.1    Marcus, R.A.2
  • 181
    • 0026320866 scopus 로고
    • The energy landscapes and motions of proteins
    • Frauenfelder, H., Sligar, S.G., and P.Wolynes, G. (1991) The energy landscapes and motions of proteins. Science, 254, 1598-1603.
    • (1991) Science , vol.254 , pp. 1598-1603
    • Frauenfelder, H.1    Sligar, S.G.2    Wolynes, P.G.3
  • 183
    • 23944498930 scopus 로고    scopus 로고
    • Mechanisms of fluorescence blinking in semiconductor nanocrystal quantum dots
    • Tang, J. and Marcus, R.A. (2005) Mechanisms of fluorescence blinking in semiconductor nanocrystal quantum dots. J. Chem. Phys., 123(5), 054704.
    • (2005) J. Chem. Phys. , vol.123 , Issue.5 , pp. 054704
    • Tang, J.1    Marcus, R.A.2
  • 184
    • 36449002985 scopus 로고
    • Diffusive dynamics on potential-energy surfaces - nonequilibrium co binding to heme-proteins
    • Agmon, N. and Rabinovich, S. (1992) Diffusive dynamics on potential-energy surfaces - nonequilibrium co binding to heme-proteins. J. Chem. Phys., 97(10), 7270-7286.
    • (1992) J. Chem. Phys. , vol.97 , Issue.10 , pp. 7270-7286
    • Agmon, N.1    Rabinovich, S.2
  • 185
    • 0141459754 scopus 로고    scopus 로고
    • Photoblinking of rhodamine 6G in poly(vinyl alcohol): Radical dark state formed through the triplet
    • Zondervan, R., Kulzer, F.,Orlinskii, S.B., and Orrit, M. (2003) Photoblinking of rhodamine 6G in poly(vinyl alcohol): Radical dark state formed through the triplet. J. Phys. Chem. A, 107(35), 6770-6776.
    • (2003) J. Phys. Chem. A , vol.107 , Issue.35 , pp. 6770-6776
    • Zondervan, R.1    Kulzer, F.2    Orlinskii, S.B.3    Orrit, M.4
  • 187
    • 0036536060 scopus 로고    scopus 로고
    • Fluorescence decay time of single semiconductor nanocrystals
    • Schlegel, G., Bohnenberger, J., Potapova, I., and Mews, A. (2002) Fluorescence decay time of single semiconductor nanocrystals. Phys. Rev. Lett., 88(13), 137401.
    • (2002) Phys. Rev. Lett. , vol.88 , Issue.13 , pp. 137401
    • Schlegel, G.1    Bohnenberger, J.2    Potapova, I.3    Mews, A.4
  • 188
    • 33646238700 scopus 로고    scopus 로고
    • Local structure of_-hairpin isotopomers by FTIR, 2D IR, and ab initio theory
    • Wang, J., Chen, J., and Hochstrasser, R.M. (2006) Local structure of_-hairpin isotopomers by FTIR, 2D IR, and ab initio theory. J. Phys. Chem. B, 110(14), 7545-7555.
    • (2006) J. Phys. Chem. B , vol.110 , Issue.14 , pp. 7545-7555
    • Wang, J.1    Chen, J.2    Hochstrasser, R.M.3
  • 189
    • 20344401549 scopus 로고    scopus 로고
    • Exciton dynamics in the LHCII complex of higher plants: Modelling based on the 2.72Å crystal structure
    • Novoderezhkin, V., Palacios M.A., van Amerongen, H., and van Grondelle, R. (2005) Exciton dynamics in the LHCII complex of higher plants: Modelling based on the 2.72Å crystal structure. J. Phys. Chem. B, 109, 10493-10504.
    • (2005) J. Phys. Chem. B , vol.109 , pp. 10493-10504
    • Novoderezhkin, V.1    Palacios, M.A.2    van Ameronge, H.3    van Grondelle, R.4


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