Light harvesting complex II B850 excitation dynamics

Journal of Chemical Physics

Volumn 131, Issue 22, 2009, Pages

  Strümpfer, Johan ^a   Schulten, Klaus ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BOLTZMANN; DISSIPATIVE QUANTUM MECHANICS; DONOR STATE; EXCITATION DYNAMICS; EXCITATION TRANSFER; EXCITON RELAXATION; EXCITON STATE; EXCITON TRANSFER; LIGHT HARVESTING COMPLEXES; LIGHT-HARVESTING COMPLEX II; PICOSECONDS; RHODOBACTER SPHAEROIDES; TOTAL TRANSFER;

ENERGY TRANSFER; HARVESTING; QUANTUM THEORY;

EXCITONS;

ARTICLE; BIOLOGICAL MODEL; CHEMISTRY; PHOTOSYNTHESIS; RHODOBACTER SPHAEROIDES;

MODELS, BIOLOGICAL; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; RHODOBACTER SPHAEROIDES;

EID: 72449190567     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3271348     Document Type: Article

References (64)

1. D. Xu and K. Schulten, in The Photosynthetic Bacterial Reaction Center: II. Structure, Spectroscopy and Dynamics, NATO Sci. Ser. A, edited by, J. Breton, and, A. Vermeglio, (Plenum, New York, 1992), pp. 301-312.
2. Probing Photosynthesis: Mechanisms, Regulation, and Adaptation, edited by, M. Yunus, U. Pathre, and, P. Mohanty, (Taylor and Francis, New York, 2000), pp. 9-39.
3. R. S. Knox, in Primary Processes of Photosynthesis, edited by, J. Barber, (Elsevier, Amsterdam, 1977), pp. 55-97.
4. K. Sauer, Bioenergetics of Photosynthesis, edited by, Govindjee, (Academic, New York, 1975), pp. 115-181.
5. M. K. Sener, J. D. Olsen, C. N. Hunter, and K. Schulten, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 104, 15723 (2007). 10.1073/pnas.0706861104 (Pubitemid 350035367)
6. R. Cogdell, N. Isaacs, A. Freer, J. Arrelano, T. Howard, M. Papiz, A. Hawthornthwaite-Lawless, and S. Prince, Prog. Biophys. Mol. Biol. 0079-6107 68, 1 (1997). 10.1016/S0079-6107(97)00010-2 (Pubitemid 28066407)
7. T. Pullerits and V. Sundström, Acc. Chem. Res. 0001-4842 29, 381 (1996). 10.1021/ar950110o
8. Anoxygenic Photosynthetic Bacteria, edited by, R. E. Blankenship, M. T. Madigan, and, C. E. Bauer, (Kluwer, Dordrecht, 1995).
9. G. R. Fleming and R. van Grondelle, Curr. Opin. Struct. Biol. 0959-440X 7, 738 (1997). 10.1016/S0959-440X(97)80086-3 (Pubitemid 27472596)
10. M. K. ener and K. Schulten, in The Purple Phototrophic Bacteria, of Advances in Photosynthesis and Respiration, edited by, C. N. Hunter, F. Daldal, M. C. Thurnauer, and, J. T. Beatty, (Springer, New York, 2008), Vol. 28, pp. 275-294. 10.1007/978-1-4020-8815-5-15
11. X. Hu, T. Ritz, A. Damjanović, and K. Schulten, J. Phys. Chem. B 1089-5647 101, 3854 (1997). 10.1021/jp963777g
12. J. Koepke, X. Hu, C. Muenke, K. Schulten, and H. Michel, Structure 4, 581 (1996). 10.1016/S0969-2126(96)00063-9 0969-2126
13. O. Kühn, V. Chernyak, and S. Mukamel, J. Chem. Phys. 0021-9606 105, 8586 (1996). 10.1063/1.472642
14. X. Hu, T. Ritz, A. Damjanović, F. Autenrieth, and K. Schulten, Q. Rev. Biophys. 0033-5835 35, 1 (2002). 10.1017/S0033583501003754 (Pubitemid 34408145)
15. V. Sundström, T. Pullerits, and R. van Grondelle, J. Phys. Chem. B 1089-5647 103, 2327 (1999). 10.1021/jp983722+
16. V. I. Novoderezhkin and A. P. Razjivin, Chem. Phys. 0301-0104 211, 203 (1996). 10.1016/0301-0104(96)00130-9 (Pubitemid 126141459)
17. V. I. Novoderezhkin and R. van Grondelle, J. Phys. Chem. B 1089-5647 106, 6025 (2002). 10.1021/jp012048k (Pubitemid 35281850)
18. V. I. Novoderezhkin, D. Rutkauskas, and R. van Grondelle, Biophys. J. 0006-3495 90, 2890 (2006). 10.1529/biophysj.105.072652
19. L. Valkunas, J. Janusonis, D. Rutkauskas, and R. van Grondelle, J. Lumin. 0022-2313 127, 269 (2007). 10.1016/j.jlumin.2007.02.032 (Pubitemid 46754055)
20. M. Yang and G. R. Fleming, Chem. Phys. 0301-0104 282, 163 (2002). 10.1016/S0301-0104(02)00604-3
21. V. May, Int. J. Quantum Chem. 0020-7608 106, 3056, (2006). 10.1002/qua.21181 (Pubitemid 44726685)
22. O. Kühn and V. Sundström, J. Chem. Phys. 0021-9606 107, 4154 (1997). 10.1063/1.474803
23. T. Renger, V. May, and O. Kühn, Phys. Rep. 0370-1573 343, 137 (2001). 10.1016/S0370-1573(00)00078-8
24. W. M. Zhang, T. Meier, V. Chernyak, and S. Mukamel, J. Chem. Phys. 0021-9606 108, 7763 (1998). 10.1063/1.476212
25. A. Ishizaki and G. R. Fleming, J. Chem. Phys. 0021-9606 130, 234110 (2009). 10.1063/1.3155214
26. A. Damjanović, T. Ritz, and K. Schulten, Int. J. Quantum Chem. 0020-7608 77, 139 (2000). 10.1002/(SICI)1097-461X(2000)77:1<139::AID-QUA133. 0.CO;2-S
27. Y. Tanimura and R. Kubo, J. Phys. Soc. Jpn. 0031-9015 58, 1199 (1989). 10.1143/JPSJ.58.1199
28. A. Ishizaki and G. R. Fleming, J. Chem. Phys. 0021-9606 130, 234111 (2009). 10.1063/1.3155372
29. A. Ishizaki and G. R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 106, 17255 (2009). 10.1073/pnas.0908989106
30. A. M. van Oijen, M. Katelaars, J. Köhler, T. J. Aartsma, and J. Schmidt, Science 0036-8075 285, 400 (1999). 10.1126/science.285.5426.400 (Pubitemid 29343960)
31. S. Tretiak, C. Middleton, V. Chernyak, and S. Mukamel, J. Phys. Chem. B 1089-5647 104, 9540 (2000). 10.1021/jp001585m (Pubitemid 30959372)
32. V. May and O. Kühn, Charge and Energy Transfer Dynamics in Molecular Systems (Wiley-VCH, Berlin, 2000).
33. Y. C. Cheng and R. J. Silbey, J. Phys. Chem. B 1089-5647 109, 21399 (2005). 10.1021/jp051303o
34. Y. Tanimura, J. Phys. Soc. Jpn. 0031-9015 75, 082001 (2006). 10.1143/JPSJ.75.082001
35. U. Weiss, Quantum Dissipative Systems (World Scientific, Singapore, 2008).
36. A. Ishizaki and Y. Tanimura, J. Phys. Soc. Jpn. 0031-9015 74, 3131 (2005). 10.1143/JPSJ.74.3131 (Pubitemid 41810936)
37. R. X. Xu, P. Cui, X. Q. Li, Y. Mo, and Y. J. Yan, J. Chem. Phys. 0021-9606 122, 041103 (2005). 10.1063/1.1850899 (Pubitemid 41047576)
38. Y. J. Yan and R. X. Xu, Annu. Rev. Phys. Chem. 0066-426X 56, 187 (2005). 10.1146/annurev.physchem.55.091602.094425 (Pubitemid 41156877)
39. Y. Yan, F. Yang, Y. Liu, and J. Shao, Chem. Phys. Lett. 0009-2614 395, 216 (2004). 10.1016/j.cplett.2004.07.036
40. Y. Tanimura, Phys. Rev. A 1050-2947 41, 6676 (1990). 10.1103/PhysRevA.41. 6676
41. R. X. Xu and Y. J. Yan, Phys. Rev. E 1063-651X 75, 031107 (2007). 10.1103/PhysRevE.75.031107 (Pubitemid 46434460)
42. Q. Shi, L. Chen, G. Nan, R. Xu, and Y. Yan, J. Chem. Phys. 0021-9606 130, 084105 (2009). 10.1063/1.3077918
43. M. Schröder, M. Schreiber, and U. Kleinekathöfer, J. Chem. Phys. 0021-9606 126, 114102 (2007). 10.1063/1.2538754 (Pubitemid 46516336)
44. I. Kosztin and K. Schulten, in Biophysical Techniques in Photosynthesis II, of Advances in Photosynthesis and Respiration, edited by, T. Aartsma, and, J. Matysik, (Springer, Dordrecht, 2008), Vol. 26, pp. 445-464. 10.1007/978-1-4020-8250-4-22
45. A. Damjanović, I. Kosztin, U. Kleinekathoefer, and K. Schulten, Phys. Rev. E 1063-651X 65, 031919 (2002). 10.1103/PhysRevE.65.031919
46. L. Janosi, I. Kosztin, and A. Damjanovic, J. Chem. Phys. 0021-9606 125, 014903 (2006). 10.1063/1.2210481 (Pubitemid 44025517)
47. U. Kleinekathöfer, J. Chem. Phys. 0021-9606 121, 2505 (2004). 10.1063/1.1770619
48. O. Zerlauskiene, G. Trinkunas, A. Gall, B. Robert, V. Urboniene, and L. Valkunas, J. Phys. Chem. B 1089-5647 112, 15883 (2008). 10.1021/jp803439w
49. A. Freiberg, M. Ratsep, K. Timpmann, and G. Trinkunas, Chem. Phys. 0301-0104 357, 102 (2009). 10.1016/j.chemphys.2008.10.043
50. W. Liu, Y. Yan, K. Liu, C. Xu, and S. Qian, Fron. Phys. China 1673-3487 1, 283 (2006). 10.1007/s11467-006-0022-z (Pubitemid 44221556)
51. S. Vulto, J. Kennis, A. Streltsov, J. Amesz, and T. Aartsma, J. Phys. Chem. B 1089-5647 103, 878 (1999). 10.1021/jp9825415
52. H. M. Visser, O. J. G. Somsen, F. van Mourik, and R. van Grondelle, J. Phys. Chem. 0022-3654 100, 18859 (1996). 10.1021/jp960883+
53. S. E. Bradforth, R. Jimenez, F. van Mourik, R. van Grondelle, and G. R. Fleming, J. Phys. Chem. 0022-3654 99, 16179 (1995). 10.1021/j100043a071
54. A. Freiberg, V. I. Godik, T. Pullerits, and K. Timpmann, Biochim. Biophys. Acta 0006-3002 973, 93 (1989). 10.1016/S0005-2728(89)80407-4
55. P. Herman, U. Kleinekathöfer, I. Barvík, and M. Schreiber, J. Lumin. 0022-2313 94-95, 447 (2001). 10.1016/S0022-2313(01)00334-9 (Pubitemid 34086106)
56. G. Trinkunas and A. Freiberg, J. Lumin. 0022-2313 119-120, 105 (2006). 10.1016/j.jlumin.2005.12.060
57. J. Linnanto and J. Korppi-Tommola, Chem. Phys. 0301-0104 357, 171 (2009). 10.1016/j.chemphys.2009.01.001
58. T. Ritz, S. Park, and K. Schulten, J. Phys. Chem. B 1089-5647 105, 8259 (2001). 10.1021/jp011032r (Pubitemid 35338851)
59. M. ener and K. Schulten, Phys. Rev. E 1063-651X 65, 031916 (2002). 10.1103/PhysRevE.65.031916
60. S. Jang, M. D. Newton, and R. J. Silbey, Phys. Rev. Lett. 0031-9007 92, 218301 (2004). 10.1103/PhysRevLett.92.218301
61. G. D. Scholes, Annu. Rev. Phys. Chem. 0066-426X 54, 57 (2003). 10.1146/annurev.physchem.54.011002.103746
62. R. van Grondelle and V. I. Novoderezhkin, Phys. Chem. Chem. Phys. 1463-9076 8, 793 (2006). 10.1039/b514032c
63. R. Monshouwer, M. Abrahamsson, F. van Mourik, and R. van Grondelle, J. Phys. Chem. B 1089-5647 101, 7241 (1997). 10.1021/jp963377t
64. R. P. Feynman and F. L. Vernon, Jr., Ann. Phys. 0003-3804 24, 118 (1963). 10.1016/0003-4916(63)90068-X