From structure to dynamics: Modeling exciton dynamics in the photosynthetic antenna PS1

Journal of Physical Chemistry B

Volumn 108, Issue 35, 2004, Pages 13536-13546

  Bruggemann B ^a   Sznee, K ^b   Novoderezhkin, V ^c   Van Grondelle, R ^b   May, V ^a  

^a HUMBOLDT UNIVERSITY   (Germany)

^b VU UNIVERSITY AMSTERDAM   (Netherlands)

^c MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR DICHROISM; EXCITON DYNAMICS; LINEAR DICHROISM; TIME DOMAIN SPECTRA;

ALGAE; CHLOROPHYLL; CHROMOPHORES; DATA ACQUISITION; FLUORESCENCE; KINETIC ENERGY; LASER PULSES; TIME DOMAIN ANALYSIS;

PHOTOSYNTHESIS;

EID: 4444249605     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp0401473     Document Type: Article

References (44)

1. Gobets, B.; van Grondelle, R. Biochim. Biophys. Acta 2001, 80, 1507.
2. Jordan, P.; Fromme, P.; Witt, H. T.; Klukas, O.; Saenger, W.; Krauß, N. Nature 2001, 411, 909.
3. Pålsson, L.-O.; Dekker, J. P.; Schlodder, E.; Monshouwer, R.; van Grondelle, R. Photosynth. Res. 1996, 48, 239.
4. Gobets, B.; van Stokkum, I. H. M.; Rögner, M.; Kruip, J.; Schlodder, E.; Karapetyan, N. V.; Dekker, J. P.; van Grondelle, R. Biophys. J. 2001, 81, 407.
5. Gobets, B.; van Amerongen, H.; Monshouwer, R.; Kruip, J.; Rögner, M.; van Grondelle, R.; Dekker, J. P. Biochim. Biophys. Acta 1994, 75, 1188.
6. Melkozernov, A. N.; Lin, S.; Blankenship, R. E. Biochemistry 2000, 39, 1489.
7. Melkozernov, A. N.; Lin, S.; Blankenship, R. E. J. Phys. Chem. B 2000, 104, 1651.
8. Gobets, B.; van Stokkum, I. H. M.; van Mourik, F.; Rögner, M.; Kruip, J.; Schlodder, E.; Dekker: J. P.; van Grondelle, R. Biophys. J. 2003, 85, 3883.
9. Pâlsson, L.-O.; Tjus, S. E.; Andersson, B.; Gillbro, T. Chem. Phys, 1995, 194, 291.
10. Kennis, J. T. M.; Gobets, B.; van Stokkum, I. H. M.; Dekker, J. P.; van Grondelle, R.; Fleming, G. R. J. Phys. Chem. B 2001, 105, 4485.
11. Byrdin, M.; Jordan, P.; Krauss, N.; Fromme, P.; Stehlik, D.; Schlodder, E. Biophys. J. 2002, 83, 433.
12. Sener, M. K.; Lu, D.; Ritz, T.; Fromme, P.; Schulten, K. J. Phys. Chem. B 2002, 106, 7948.
13. Yang, M.; Damjanovic, A.; Vaswani, H. M.; Fleming, G. R. Biophys. J. 2003, 85, 140.
14. Damjanovic, A.; Vaswani, H. M.; Fromme, P.; Fleming, G. R. J. Phys. Chem. B 2002, 106, 10251.
15. van Amerongen, H.; Valkunas, L.; van Grondelle, R. Photosynthetic Excitons; World Scientific Publishers: Singapore, 2000.
16. Fragata, M.; Nordén, B.; Kurucsev, T. Photochem. Photobiol. 1988, 47, 133.
17. van Zandvoort, M. A. M. J.; Wróbel, D.; Lettinga, P.; van Ginkel, G.; Levine, Y. K. Photochem. Photobiol. 1995, 62, 299.
18. Kleima, F. J.; Hofmann, E.; Gobets, B.; van Stokkum, I. H. M.; van Grondelle, R.; Diederichs, K.; van Amerongen, H. Biophys. J. 2000, 78, 344.
19. Parusel, A. B. J.; Grimme, S. J. Phys. Chem. B 2000, 104, 5395.
20. Beddard, G. S. J. Phys. Chem. B 1998, 102, 10966.
21. Beddard, G. S. Philos. Trans. R. Soc. London, Ser. A 1998, 356, 421.
22. Renger, Th.; May, V.; Kühn, O. Phys. Rep. 2001, 137, 343.
23. May, V.; Kühn, O. Charge and Energy Transfer Dynamics in Molecular Systems, 2nd ed.; Wiley-VCH: Berlin, 2004.
24. Brüggemann, B.; May, V. J. Chem. Phys. 2004, 120, 2325.
25. Houssier, C.; Sauer, K. J, Am. Chem. Soc. 1970, 92, 779.
26. den Hartog, F. T. H.; van Papendrecht, C.; Störkel, U.; Völker, S. J. Phys. Chem. B 1999, 103, 1375.
27. Peterman, E. J. G.; Pullerits, T.; van Grondelle, R.; van Amerongen, H. J. Phys. Chem. B 1997, 101, 4448.
28. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: Oxford, 1999.
29. Gelin, M. F.; Egorova, D.; Domcke, W. Chem. Phys. 2004, 129, 301.
30. Bäck, T.; Schwefel, H.-P. Evolutionary Computation 1993, 1, 1.
31. Simonetto, R.; Crime, M.; Sandonà, D.; Croce, R.; Cinque, G.; Breton, J.; Bassi, R. Biochemistry 1999, 38, 12974.
32. Zazubovich, V.; Matsuzaki, S.; Johnsson, T. W.; Hayes, J. M.; Chitnis, P. R.; Small, G. J. Chem. Phys. 2002, 275, 47.
33. Jelezko, F.; Tietz, C.; Gerken, U.; Wrachtrup, J.; Bittl, R. J. Phys. Chem. B 2000, 104, 8093.
34. m,m0 which immediately results in N(α) = 1.
35. Holzwarth, A. R.; Schatz, G.; Brock, H.; Bittersmann, E. Biophys. J. 1993, 64, 1813.
36. Byrdin, M.; Rimke, I.; Schlodder, E.; Stehlik, D.; Roelofs, T. A. Biophys. J. 2000, 79, 992.
37. Novoderezhkin, V.; van Grondelle, R. J. Phys. Chem. B 2002, 106, 6025.
38. Novoderezhkin, V.; Wendling, M.; van Grondelle, R. J. Phys. Chem. B 2003, 107, 11534.
39. Brüggemann, B.; Herek, J. L.; Sundström, V.; Pullerits, T.; May, V. J. Phys. Chem. B 2001, 105, 11391.
40. Novoderezhkin, V.; Salverda, J. M.; van Amerongen, H.; van Grondelle, R. J. Phys. Chem. B 2003, 107, 1893.
41. Press, W. D.; Teukolsky, S. A.; Vetterling, W. T.; Flannery, B. P. Numerical Recipies in Fortran; Cambridge University Press: New York, 1992.
42. Note that the fastest component splits up into two, one with a time constant of 414 fs and one with a time constant of 438 fs. Because they have a relatively large DAS, only the sum of both has been plotted. However, we did not comment on this effect in the running text because experimental data are not available for this short-time contribution.
43. Brüggemann, B.; May, V. Chem. Phys. Lett. To be published.
44. Brüggemann, B.; May, V. J. Phys. Chem. B (special issue honoring the work of Gerald J. Small) 2004, 108, 10529.